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Increase the total number of MPI due to increase number of variables for #2648

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Increase the total number of MPI due to increase number of variables for #2648

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12 changes: 6 additions & 6 deletions ush/calcanl_gfs.py
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Original file line number Diff line number Diff line change
Expand Up @@ -135,7 +135,7 @@ def calcanl_gfs(DoIAU, l4DEnsVar, Write4Danl, ComOut, APrefix,
ExecCMDMPI1 = ExecCMDMPI.replace("$ncmd", str(1))
ExecCMDMPI = ExecCMDMPI.replace("$ncmd", str(nFH))
ExecCMDLevs = ExecCMDMPI.replace("$ncmd", str(levs))
ExecCMDMPI10 = ExecCMDMPI.replace("$ncmd", str(10))
ExecCMDMPI13 = ExecCMDMPI.replace("$ncmd", str(13))

# are we using mpirun with lsf, srun, or aprun with Cray?
launcher = ExecCMDMPI.split(' ')[0]
Expand All @@ -156,7 +156,7 @@ def calcanl_gfs(DoIAU, l4DEnsVar, Write4Danl, ComOut, APrefix,
ExecCMDMPILevs_host = 'mpirun -np ' + str(levs) + ' --hostfile hosts'
ExecCMDMPILevs_nohost = 'mpirun -np ' + str(levs)
ExecCMDMPI1_host = 'mpirun -np 1 --hostfile hosts'
ExecCMDMPI10_host = 'mpirun -np 10 --hostfile hosts'
ExecCMDMPI13_host = 'mpirun -np 13 --hostfile hosts'
elif launcher == 'mpiexec':
hostfile = os.getenv('PBS_NODEFILE', '')
with open(hostfile) as f:
Expand All @@ -175,7 +175,7 @@ def calcanl_gfs(DoIAU, l4DEnsVar, Write4Danl, ComOut, APrefix,
ExecCMDMPILevs_host = 'mpiexec -l -n ' + str(levs)
ExecCMDMPILevs_nohost = 'mpiexec -l -n ' + str(levs)
ExecCMDMPI1_host = 'mpiexec -l -n 1 --cpu-bind depth --depth ' + str(NThreads)
ExecCMDMPI10_host = 'mpiexec -l -n 10 --cpu-bind depth --depth ' + str(NThreads)
ExecCMDMPI13_host = 'mpiexec -l -n 13 --cpu-bind depth --depth ' + str(NThreads)
elif launcher == 'srun':
nodes = os.getenv('SLURM_JOB_NODELIST', '')
hosts_tmp = subprocess.check_output('scontrol show hostnames ' + nodes, shell=True)
Expand All @@ -200,7 +200,7 @@ def calcanl_gfs(DoIAU, l4DEnsVar, Write4Danl, ComOut, APrefix,
ExecCMDMPILevs_host = 'srun -n ' + str(levs) + ' --verbose --export=ALL -c 1 --distribution=arbitrary --cpu-bind=cores'
ExecCMDMPILevs_nohost = 'srun -n ' + str(levs) + ' --verbose --export=ALL'
ExecCMDMPI1_host = 'srun -n 1 --verbose --export=ALL -c 1 --distribution=arbitrary --cpu-bind=cores'
ExecCMDMPI10_host = 'srun -n 10 --verbose --export=ALL -c 1 --distribution=arbitrary --cpu-bind=cores'
ExecCMDMPI13_host = 'srun -n 13 --verbose --export=ALL -c 1 --distribution=arbitrary --cpu-bind=cores'
elif launcher == 'aprun':
hostfile = os.getenv('LSB_DJOB_HOSTFILE', '')
with open(hostfile) as f:
Expand All @@ -213,7 +213,7 @@ def calcanl_gfs(DoIAU, l4DEnsVar, Write4Danl, ComOut, APrefix,
ExecCMDMPILevs_host = 'aprun -l hosts -d ' + str(NThreads) + ' -n ' + str(levs)
ExecCMDMPILevs_nohost = 'aprun -d ' + str(NThreads) + ' -n ' + str(levs)
ExecCMDMPI1_host = 'aprun -l hosts -d ' + str(NThreads) + ' -n 1'
ExecCMDMPI10_host = 'aprun -l hosts -d ' + str(NThreads) + ' -n 10'
ExecCMDMPI13_host = 'aprun -l hosts -d ' + str(NThreads) + ' -n 13'
else:
print('unknown MPI launcher. Failure.')
sys.exit(1)
Expand Down Expand Up @@ -248,7 +248,7 @@ def calcanl_gfs(DoIAU, l4DEnsVar, Write4Danl, ComOut, APrefix,
ihost += 1
for a in range(0, 5):
hostfile.write(hosts[ihost] + '\n')
for a in range(0, 9): # need 9 more of the same host for the 10 tasks for chgres_inc
for a in range(0, 12): # need 9 more of the same host for the 10 tasks for chgres_inc
hostfile.write(hosts[ihost] + '\n')
if launcher == 'srun':
os.environ['SLURM_HOSTFILE'] = CalcAnlDir + '/hosts'
Expand Down