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Merged
KateFriedman-NOAA merged 18 commits into from
May 19, 2021
Merged

Merra2 #254

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3bdc629
merra2 workflow for orion
AnningCheng-NOAA Dec 1, 2020
947bbad
added merra2 input and update diag_table
AnningCheng-NOAA Dec 1, 2020
79f23fa
fixed a bug related to orion
AnningCheng-NOAA Dec 1, 2020
81442ad
high resolution MERRA2 data used
AnningCheng-NOAA Dec 1, 2020
378953d
udate config.base.emc.dyn
AnningCheng-NOAA Dec 2, 2020
29bd69b
update merra2 before a new pull request
AnningCheng-NOAA Feb 2, 2021
1ea07da
testing merra2 workflow in hera
AnningCheng-NOAA Feb 9, 2021
960ca42
updated config.fcst
AnningCheng-NOAA Mar 1, 2021
0f97ccd
Merge branch 'merra2' of https://github.com/AnningCheng-NOAA/global-w…
AnningCheng-NOAA Mar 1, 2021
ac76613
Merge remote-tracking branch 'upstream/develop' into merra2
AnningCheng-NOAA Mar 8, 2021
be564bb
changes on build_fv3.sh and symlinks to optical data files instead of cp
AnningCheng-NOAA Apr 22, 2021
101905c
changed fix dir for link_fv3gfs
AnningCheng-NOAA Apr 27, 2021
587ac0c
changes added in link_fv3gfs for fix_aer
AnningCheng-NOAA Apr 28, 2021
bf5d110
fixed line 43 of link_fv3gfs.sh, build_fv3.sh v15 to v16
AnningCheng-NOAA May 3, 2021
dfc8aa9
Merge remote-tracking branch 'upstream/develop' into merra2
AnningCheng-NOAA May 12, 2021
6b57416
build_fv3.sh with ATM
AnningCheng-NOAA May 14, 2021
283c4a0
fixed a compilation error, NEMs/exe existing, in hera
AnningCheng-NOAA May 17, 2021
fa5d1e2
change fv3gfs checkout head
AnningCheng-NOAA May 18, 2021
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6 changes: 3 additions & 3 deletions parm/config/config.base.emc.dyn
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Expand Up @@ -140,8 +140,8 @@ export CASE="@CASECTL@"
export CASE_ENKF="@CASEENS@"

# Run with CCPP physics
export RUN_CCPP="NO"
export CCPP_SUITE="FV3_GFS_v16beta"
export RUN_CCPP="YES"
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export CCPP_SUITE="FV3_GFS_v16"

# Surface cycle update frequency
if [[ "$CDUMP" == "gdas" ]] ; then
Expand Down Expand Up @@ -222,7 +222,7 @@ export DO_GLDAS="YES"
export gldas_cyc=00

# run wave component
export DO_WAVE="YES"
export DO_WAVE="NO"
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export WAVE_CDUMP="both"

# Microphysics Options: 99-ZhaoCarr, 8-Thompson; 6-WSM6, 10-MG, 11-GFDL
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7 changes: 4 additions & 3 deletions parm/config/config.fcst
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Expand Up @@ -89,7 +89,7 @@ else
fi

# Radiation options
export IAER=5111 ;#spectral band mapping method for aerosol optical properties
export IAER=1011 ;#spectral band mapping method for aerosol optical properties
export iovr_lw=3 ;#de-correlation length cloud overlap method (Barker, 2008)
export iovr_sw=3 ;#de-correlation length cloud overlap method (Barker, 2008)
export iovr=3 ;#de-correlation length cloud overlap method (Barker, 2008)
Expand Down Expand Up @@ -186,7 +186,8 @@ if [[ "$CDUMP" == "gdas" ]] ; then # GDAS cycle specific parameters

# Variables used in DA cycling
if [ $QUILTING = ".true." -a $OUTPUT_GRID = "gaussian_grid" ]; then
export DIAG_TABLE="$HOMEgfs/parm/parm_fv3diag/diag_table_da"
##export DIAG_TABLE="$HOMEgfs/parm/parm_fv3diag/diag_table_da"
export DIAG_TABLE="$HOMEgfs/parm/parm_fv3diag/diag_table_aod"
else
export DIAG_TABLE="$HOMEgfs/parm/parm_fv3diag/diag_table_da_orig"
fi
Expand Down Expand Up @@ -217,7 +218,7 @@ elif [[ "$CDUMP" == "gfs" ]] ; then # GFS cycle specific parameters

# Write more variables to output
if [ $QUILTING = ".true." -a $OUTPUT_GRID = "gaussian_grid" ]; then
export DIAG_TABLE="$HOMEgfs/parm/parm_fv3diag/diag_table"
export DIAG_TABLE="$HOMEgfs/parm/parm_fv3diag/diag_table_aod"
else
export DIAG_TABLE="$HOMEgfs/parm/parm_fv3diag/diag_table_orig"
fi
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213 changes: 213 additions & 0 deletions parm/parm_fv3diag/diag_table_aod
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12 changes: 12 additions & 0 deletions scripts/exglobal_forecast.sh
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Expand Up @@ -67,6 +67,8 @@ NWPROD=${NWPROD:-${NWROOT:-$pwd}}
HOMEgfs=${HOMEgfs:-$NWPROD}
FIX_DIR=${FIX_DIR:-$HOMEgfs/fix}
FIX_AM=${FIX_AM:-$FIX_DIR/fix_am}
export FIX_AER=${FIX_AER:-$FIX_DIR/fix_aer}
export FIX_LUT=${FIX_LUT:-$FIX_DIR/fix_lut}
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FIXfv3=${FIXfv3:-$FIX_DIR/fix_fv3_gmted2010}
DATA=${DATA:-$pwd/fv3tmp$$} # temporary running directory
ROTDIR=${ROTDIR:-$pwd} # rotating archive directory
Expand Down Expand Up @@ -402,6 +404,16 @@ $NLN $FIX_AM/${H2OFORC} $DATA/global_h2oprdlos.f77
$NLN $FIX_AM/global_solarconstant_noaa_an.txt $DATA/solarconstant_noaa_an.txt
$NLN $FIX_AM/global_sfc_emissivity_idx.txt $DATA/sfc_emissivity_idx.txt

## merra2 aerosol climo
for n in 01 02 03 04 05 06 07 08 09 10 11 12; do
$NLN $FIX_AER/merra2.aerclim.2003-2014.m${n}.nc $DATA/aeroclim.m${n}.nc
done
$NLN $FIX_LUT/optics_BC.v1_3.dat $DATA/optics_BC.dat
$NLN $FIX_LUT/optics_OC.v1_3.dat $DATA/optics_OC.dat
$NLN $FIX_LUT/optics_DU.v15_3.dat $DATA/optics_DU.dat
$NLN $FIX_LUT/optics_SS.v3_3.dat $DATA/optics_SS.dat
$NLN $FIX_LUT/optics_SU.v1_3.dat $DATA/optics_SU.dat

$NLN $FIX_AM/global_co2historicaldata_glob.txt $DATA/co2historicaldata_glob.txt
$NLN $FIX_AM/co2monthlycyc.txt $DATA/co2monthlycyc.txt
if [ $ICO2 -gt 0 ]; then
Expand Down
6 changes: 3 additions & 3 deletions sorc/build_fv3.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -22,11 +22,11 @@ if [ $target = orion ]; then target=orion.intel ; fi
cd fv3gfs.fd/
FV3=$( pwd -P )/FV3
cd tests/

if [ ${RUN_CCPP:-${1:-"NO"}} = "NO" ]; then
if [ ! -d ../NEMS/exe ]; then mkdir ../NEMS/exe ; fi
if [ ${RUN_CCPP:-${1:-"YES"}} = "NO" ]; then
./compile.sh "$FV3" "$target" "WW3=Y 32BIT=Y" 1
mv -f fv3_1.exe ../NEMS/exe/global_fv3gfs.x
else
./compile.sh "$target" "CCPP=Y 32BIT=Y SUITES=FV3_GFS_v15,FV3_GFS_v16beta" 2 NO NO
./compile.sh "$target" "APP=ATM CCPP=Y 32BIT=Y SUITES=FV3_GFS_v16,FV3_GFS_v16_RRTMGP" 2 YES NO
mv -f fv3_2.exe ../NEMS/exe/global_fv3gfs.x
fi
2 changes: 1 addition & 1 deletion sorc/checkout.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -34,7 +34,7 @@ if [[ ! -d fv3gfs.fd ]] ; then
if [ ${run_ccpp:-"NO"} = "NO" ]; then
git checkout GFS.v16.0.16
else
git checkout b771e5be7e35eaea5ee7f762d644afccab019ed3
git checkout 9350745855aebe0790813e0ed2ba5ad680e3f75c
fi
git submodule update --init --recursive
cd ${topdir}
Expand Down
10 changes: 5 additions & 5 deletions sorc/link_fv3gfs.sh
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Expand Up @@ -31,16 +31,16 @@ pwd=$(pwd -P)
#--model fix fields
#------------------------------
if [ $machine == "cray" ]; then
FIX_DIR="/gpfs/hps3/emc/global/noscrub/emc.glopara/git/fv3gfs/fix_nco_gfsv16"
FIX_DIR="/gpfs/hps3/emc/global/noscrub/emc.glopara/git/fv3gfs/fix"
elif [ $machine = "dell" ]; then
FIX_DIR="/gpfs/dell2/emc/modeling/noscrub/emc.glopara/git/fv3gfs/fix_nco_gfsv16"
FIX_DIR="/gpfs/dell2/emc/modeling/noscrub/emc.glopara/git/fv3gfs/fix"
elif [ $machine = "hera" ]; then
FIX_DIR="/scratch1/NCEPDEV/global/glopara/fix_nco_gfsv16"
FIX_DIR="/scratch1/NCEPDEV/global/glopara/fix"
elif [ $machine = "orion" ]; then
FIX_DIR="/work/noaa/global/glopara/fix_nco_gfsv16"
FIX_DIR="/work/noaa/global/glopara/fix"
fi
cd ${pwd}/../fix ||exit 8
for dir in fix_am fix_fv3_gmted2010 fix_gldas fix_orog fix_verif fix_wave_gfs ; do
for dir in fix_aer fix_am fix_chem fix_fv3_gmted2010 fix_gldas fix_lut fix_orog fix_sfc_climo fix_verif fix_wave_gfs ; do
if [ -d $dir ]; then
[[ $RUN_ENVIR = nco ]] && chmod -R 755 $dir
rm -rf $dir
Expand Down