Jenkins Pipeline updates for Canceling Jobs

Jenkinsfile

@@ -9,7 +9,7 @@ pipeline {
 
     options {
         skipDefaultCheckout()
-        buildDiscarder(logRotator(numToKeepStr: '2'))
+        parallelsAlwaysFailFast()
     }
 
     stages { // This initial stage is used to get the Machine name from the GitHub labels on the PR
@@ -45,14 +45,14 @@ pipeline {
                     properties([parameters([[$class: 'NodeParameterDefinition', allowedSlaves: ['built-in', 'Hera-EMC', 'Orion-EMC'], defaultSlaves: ['built-in'], name: '', nodeEligibility: [$class: 'AllNodeEligibility'], triggerIfResult: 'allCases']])])
                     HOME = "${WORKSPACE}/TESTDIR"
                     commonworkspace = "${WORKSPACE}"
-                    sh(script: "mkdir -p ${HOME}/RUNTESTS", returnStatus: true)
+                    sh(script: "mkdir -p ${HOME}/RUNTESTS")
                     pullRequest.addLabel("CI-${Machine}-Building")
                     if (pullRequest.labels.any { value -> value.matches("CI-${Machine}-Ready") }) {
                         pullRequest.removeLabel("CI-${Machine}-Ready")
+                    }
                 }
             }
         }
-    }
 
         stage('Build System') {
             matrix {
@@ -71,35 +71,41 @@ pipeline {
                         steps {
                             script {
                                 def HOMEgfs = "${HOME}/${system}" // local HOMEgfs is used to build the system on per system basis under the common workspace HOME
-                                sh(script: "mkdir -p ${HOMEgfs}", returnStatus: true)
+                                sh(script: "mkdir -p ${HOMEgfs}")
                                 ws(HOMEgfs) {
                                     env.MACHINE_ID = machine // MACHINE_ID is used in the build scripts to determine the machine and is added to the shell environment
                                     if (fileExists("${HOMEgfs}/sorc/BUILT_semaphor")) { // if the system is already built, skip the build in the case of re-runs
                                         sh(script: "cat ${HOMEgfs}/sorc/BUILT_semaphor", returnStdout: true).trim() // TODO: and user configurable control to manage build semphore
-                                        ws(commonworkspace) { pullRequest.comment("Cloned PR already built (or build skipped) on ${machine} in directory ${HOMEgfs}") }
+                                        pullRequest.comment("Cloned PR already built (or build skipped) on ${machine} in directory ${HOMEgfs}<br>Still doing a checkout to get the latest changes")
+                                        sh(script: 'source workflow/gw_setup.sh; git pull --recurse-submodules')
+                                        dir('sorc') {
+                                            sh(script: './link_workflow.sh')
+                                        }
                                     } else {
                                         checkout scm
-                                        sh(script: 'source workflow/gw_setup.sh;which git;git --version;git submodule update --init --recursive', returnStatus: true)
+                                        sh(script: 'source workflow/gw_setup.sh;which git;git --version;git submodule update --init --recursive')
                                         def builds_file = readYaml file: 'ci/cases/yamls/build.yaml'
                                         def build_args_list = builds_file['builds']
                                         def build_args = build_args_list[system].join(' ').trim().replaceAll('null', '')
                                         dir("${HOMEgfs}/sorc") {
-                                            sh(script: "${build_args}", returnStatus: true)
-                                            sh(script: './link_workflow.sh', returnStatus: true)
-                                            sh(script: "echo ${HOMEgfs} > BUILT_semaphor", returnStatus: true)
+                                            sh(script: "${build_args}")
+                                            sh(script: './link_workflow.sh')
+                                            sh(script: "echo ${HOMEgfs} > BUILT_semaphor")
                                         }
                                     }
-                                    if (pullRequest.labels.any { value -> value.matches("CI-${Machine}-Building") }) {
-                                        pullRequest.removeLabel("CI-${Machine}-Building")
-                                }
-                                    pullRequest.addLabel("CI-${Machine}-Running")
-                            }
+                                    if (env.CHANGE_ID && system == 'gfs') {
+                                       if (pullRequest.labels.any { value -> value.matches("CI-${Machine}-Building") }) {
+                                           pullRequest.removeLabel("CI-${Machine}-Building")
+                                       }
+                                       pullRequest.addLabel("CI-${Machine}-Running")
+                                    }
+                               }
+                           }
                         }
                     }
                 }
             }
         }
-}
 
         stage('Run Tests') {
             matrix {
@@ -108,19 +114,19 @@ pipeline {
                     axis {
                         name 'Case'
                         // TODO add dynamic list of cases from env vars (needs addtional plugins)
-                        values 'C48_ATM', 'C48_S2SWA_gefs', 'C48_S2SW', 'C96_atm3DVar', 'C48mx500_3DVarAOWCDA', 'C96C48_hybatmDA', 'C96_atmsnowDA'
+                        values 'C48_ATM', 'C48_S2SWA_gefs', 'C48_S2SW', 'C96_atm3DVar', 'C96C48_hybatmDA', 'C96_atmsnowDA'  // 'C48mx500_3DVarAOWCDA'
                     }
                 }
                 stages {
                     stage('Create Experiment') {
                         steps {
                                 script {
-                                    sh(script: "sed -n '/{.*}/!p' ${HOME}/gfs/ci/cases/pr/${Case}.yaml > ${HOME}/gfs/ci/cases/pr/${Case}.yaml.tmp", returnStatus: true)
+                                    sh(script: "sed -n '/{.*}/!p' ${HOME}/gfs/ci/cases/pr/${Case}.yaml > ${HOME}/gfs/ci/cases/pr/${Case}.yaml.tmp")
                                     def yaml_case = readYaml file: "${HOME}/gfs/ci/cases/pr/${Case}.yaml.tmp"
                                     system = yaml_case.experiment.system
                                     def HOMEgfs = "${HOME}/${system}"   // local HOMEgfs is used to populate the XML on per system basis
                                     env.RUNTESTS = "${HOME}/RUNTESTS"
-                                    sh(script: "${HOMEgfs}/ci/scripts/utils/ci_utils_wrapper.sh create_experiment ${HOMEgfs}/ci/cases/pr/${Case}.yaml", returnStatus: true)
+                                    sh(script: "${HOMEgfs}/ci/scripts/utils/ci_utils_wrapper.sh create_experiment ${HOMEgfs}/ci/cases/pr/${Case}.yaml")
                                 }
                         }
                     }
@@ -130,16 +136,27 @@ pipeline {
                                 HOMEgfs = "${HOME}/gfs"  // common HOMEgfs is used to launch the scripts that run the experiments
                                 ws(HOMEgfs) {
                                     pslot = sh(script: "${HOMEgfs}/ci/scripts/utils/ci_utils_wrapper.sh get_pslot ${HOME}/RUNTESTS ${Case}", returnStdout: true).trim()
-                                    pullRequest.comment("**Running** experiment: ${Case} on ${Machine}<br>With the experiment in directory:<br>`${HOME}/RUNTESTS/${pslot}`")
-                                    try {
-                                        sh(script: "${HOMEgfs}/ci/scripts/run-check_ci.sh ${HOME} ${pslot}", returnStatus: true)
-                                    } catch (Exception e) {
+                                    // pullRequest.comment("**Running** experiment: ${Case} on ${Machine}<br>With the experiment in directory:<br>`${HOME}/RUNTESTS/${pslot}`")
+                                    err =  sh(script: "${HOMEgfs}/ci/scripts/run-check_ci.sh ${HOME} ${pslot}")
+                                    if (err != 0) {
                                         pullRequest.comment("**FAILURE** running experiment: ${Case} on ${Machine}")
+                                        sh(script: "${HOMEgfs}/ci/scripts/utils/ci_utils_wrapper.sh cancel_all_batch_jobs ${HOME}/RUNTESTS")
+                                        ws(HOME) {
+                                            if (fileExists('RUNTESTS/error.logs')) {
+                                                def fileContent = readFile 'RUNTESTS/error.logs'
+                                                def lines = fileContent.readLines()
+                                                for (line in lines) {
+                                                    echo "archiving: ${line}"
+                                                    archiveArtifacts artifacts: "${line}", fingerprint: true
+                                                }   
+                                            }
+                                        }
                                         error("Failed to run experiments ${Case} on ${Machine}")
                                     }
-                                    pullRequest.comment("**SUCCESS** running experiment: ${Case} on ${Machine}")
+                                   // pullRequest.comment("**SUCCESS** running experiment: ${Case} on ${Machine}")
                                 }
                             }
+
                         }
                     }
                 }
@@ -175,14 +192,6 @@ pipeline {
                     def timestamp = new Date().format('MM dd HH:mm:ss', TimeZone.getTimeZone('America/New_York'))
                     pullRequest.comment("**CI FAILED** ${Machine} at ${timestamp}<br>Built and ran in directory `${HOME}`")
                 }
-                if (fileExists('${HOME}/RUNTESTS/ci.log')) {
-                    def fileContent = readFile '${HOME}/RUNTESTS/ci.log'
-                    fileContent.eachLine { line ->
-                        if (line.contains('.log')) {
-                            archiveArtifacts artifacts: "${line}", fingerprint: true
-                        }
-                    }
-                }
             }
         }
     }

ci/cases/pr/C48mx500_3DVarAOWCDA.yaml

@@ -17,6 +17,7 @@ arguments:
   start: warm
   yaml: {{ HOMEgfs }}/ci/cases/yamls/soca_gfs_defaults_ci.yaml
 
-skip_ci_on_hosts:
+skip_ci_on_host:
   - orion
+  - hera
   - hercules

ci/scripts/run-check_ci.sh

@@ -25,6 +25,7 @@ pslot=${2:-${pslot:-?}}        # Name of the experiment being tested by this scr
 # TODO: Make this configurable (for now all scripts run from gfs for CI at runtime)
 HOMEgfs="${TEST_DIR}/gfs"
 RUNTESTS="${TEST_DIR}/RUNTESTS"
+run_check_logfile="${RUNTESTS}/ci-run_check.log"
 
 # Source modules and setup logging
 echo "Source modules."
@@ -77,15 +78,16 @@ while true; do
     {
       echo "Experiment ${pslot} Terminated with ${num_failed} tasks failed at $(date)" || true
       echo "Experiment ${pslot} Terminated: *FAILED*"
-    } >> "${RUNTESTS}/ci.log"
-
+    } | tee -a "${run_check_logfile}"
     error_logs=$(rocotostat -d "${db}" -w "${xml}" | grep -E 'FAIL|DEAD' | awk '{print "-c", $1, "-t", $2}' | xargs rocotocheck -d "${db}" -w "${xml}" | grep join | awk '{print $2}') || true
     {
      echo "Error logs:"
      echo "${error_logs}"
-    } >> "${RUNTESTS}/ci.log"
-    sed -i "s/\`\`\`//2g" "${RUNTESTS}/ci.log"
-    sacct --format=jobid,jobname%35,WorkDir%100,stat | grep "${pslot}" | grep "${pr}\/RUNTESTS" |  awk '{print $1}' | xargs scancel || true
+    } | tee -a  "${run_check_logfile}"
+    # rm -f "${RUNTESTS}/error.logs"
+    for log in ${error_logs}; do
+      echo "RUNTESTS${log#*RUNTESTS}" >> "${RUNTESTS}/error.logs"
+    done
     rc=1
     break
   fi
@@ -95,8 +97,7 @@ while true; do
       echo "Experiment ${pslot} Completed at $(date)" || true
       echo "with ${num_succeeded} successfully completed jobs" || true
       echo "Experiment ${pslot} Completed: *SUCCESS*"
-    } >> "${RUNTESTS}/ci.log"
-    sed -i "s/\`\`\`//2g" "${RUNTESTS}/ci.log"
+    } | tee -a "${run_check_logfile}"
     rc=0
     break
   fi
@@ -107,3 +108,4 @@ while true; do
 done
 
 exit "${rc}"
+

ci/scripts/utils/ci_utils.sh

@@ -102,6 +102,14 @@ function get_pslot () {
 
 }
 
+function cancel_all_batch_jobs () {
+  local RUNTESTS="${1}"
+  pslot_list=$(get_pslot_list "${RUNTESTS}")
+  for pslot in ${pslot_list}; do
+    cancel_batch_jobs "${pslot}"
+  done
+}
+
 function create_experiment () {
 
   local yaml_config="${1}"