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Merged
KateFriedman-NOAA merged 27 commits into from
Dec 18, 2020
Merged

NCO changes for v16.0.3 #221

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670b97c
updates for checking if RTOFS files exist and
JessicaMeixner-NOAA Nov 2, 2020
b096e29
Merge pull request #173 from JessicaMeixner-NOAA/bugfix/rtofsissues
KateFriedman-NOAA Nov 6, 2020
e9d00e4
update for the wave parm so that the wave model will look for the
JessicaMeixner-NOAA Nov 18, 2020
ce1ae97
Merge pull request #192 from JessicaMeixner-NOAA/bf/waveICfreq
yangfanglin Nov 18, 2020
f39ea0c
create a new branch release/gfsv16.0.0.nco to merge changes made by NCO
yangfanglin Nov 19, 2020
759cf33
Compared local files in NCO implementation directory with release/gfs…
yangfanglin Nov 20, 2020
5a516b4
modified: link_fv3gfs.sh to
yangfanglin Nov 20, 2020
bd5294e
modified: checkout.sh to update UPP to upp_gfsv16_release.v1.1.1, …
yangfanglin Nov 21, 2020
e600377
modified: checkout.sh to use WAFS tag gfs_wafs.v6.0.16
yangfanglin Nov 24, 2020
7283c7e
modified: JGLOBAL_FORECAST
yangfanglin Nov 27, 2020
25a28c8
modified: JGLOBAL_FORECAST to make it work for both emc and nco run…
yangfanglin Nov 30, 2020
d82efa8
modified: JGLOBAL_FORECAST
yangfanglin Nov 30, 2020
194f280
Issue #197: place CDATE specific sections of config.anal and config.…
RussTreadon-NOAA Nov 30, 2020
069f266
Add override for COMIN_WAV_RTOFS in emc mode for waveprep job
KateFriedman-NOAA Dec 2, 2020
6da1a24
Merge pull request #204 from NOAA-EMC/release/gfsv16.0.0.nco
KateFriedman-NOAA Dec 7, 2020
be5f9ec
Script alert updates from NCO for wave downstream
KateFriedman-NOAA Dec 7, 2020
b5d97ab
Merge pull request #205 from NOAA-EMC/release/gfsv16.0.0.nco
KateFriedman-NOAA Dec 7, 2020
0ee264b
Issue #1 - update gempak and dumpjb versions to 7.3.3 and 5.1.0 respe…
KateFriedman-NOAA Dec 9, 2020
dee856c
Issue #1 - update gempak version to 7.3.3 in the ecflow gfs.ver file
KateFriedman-NOAA Dec 9, 2020
7c7482d
Issue #1 - correct permissions on jobs/rocoto/postsnd.sh
KateFriedman-NOAA Dec 10, 2020
b9f7de8
Issue #1 - update Externals.cfg with final tags for GFSv16.0.2
KateFriedman-NOAA Dec 10, 2020
39246c6
Issue #1 - changes from NCO for GFSv16.0.3
KateFriedman-NOAA Dec 11, 2020
ec5e2e5
Issue #1 - correct gridded wave parm files for v16.0.3
KateFriedman-NOAA Dec 14, 2020
425588f
Issue #1 - update WAFS tag to gfs_wafs.v6.0.17 for dbn_alert change
KateFriedman-NOAA Dec 14, 2020
e89045b
Issue #1 - add grib_util module load to several analysis ecflow scripts
KateFriedman-NOAA Dec 16, 2020
65b4d96
Issue #1 - merge v16.0.3 changes from NCO into develop
KateFriedman-NOAA Dec 17, 2020
abb168b
Issue #1 and issue #220 - set C192/C96/C48 npe_eobs back to dev value…
KateFriedman-NOAA Dec 17, 2020
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6 changes: 3 additions & 3 deletions Externals.cfg
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Expand Up @@ -15,14 +15,14 @@ protocol = git
required = True

[GLDAS]
tag = gldas_gfsv16_release.v1.11.0
tag = gldas_gfsv16_release.v1.12.0
local_path = sorc/gldas.fd
repo_url = https://github.com/NOAA-EMC/GLDAS.git
protocol = git
required = True

[EMC_post]
tag = upp_gfsv16_release.v1.1.0
tag = upp_gfsv16_release.v1.1.1
local_path = sorc/gfs_post.fd
repo_url = https://github.com/NOAA-EMC/EMC_post.git
protocol = git
Expand All @@ -43,7 +43,7 @@ protocol = git
required = True

[EMC_gfs_wafs]
tag = gfs_wafs.v6.0.14
tag = gfs_wafs.v6.0.17
local_path = sorc/gfs_wafs.fd
repo_url = https://github.com/NOAA-EMC/EMC_gfs_wafs.git
protocol = git
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2 changes: 1 addition & 1 deletion docs/Release_Notes.gfs_downstream.v16.0.0.txt
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Expand Up @@ -64,7 +64,7 @@ PARM/wmo
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

FV3 GFS DRIVER:
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2 changes: 1 addition & 1 deletion driver/product/run_JGDAS_ATMOS_GEMPAK_META_NCDC_dell.sh_00
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Expand Up @@ -38,7 +38,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGDAS_ATMOS_GEMPAK_META_NCDC_dell.sh_06
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Expand Up @@ -38,7 +38,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGDAS_ATMOS_GEMPAK_META_NCDC_dell.sh_12
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Expand Up @@ -38,7 +38,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGDAS_ATMOS_GEMPAK_META_NCDC_dell.sh_18
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Expand Up @@ -38,7 +38,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGDAS_ATMOS_GEMPAK_dell.sh_00
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Expand Up @@ -38,7 +38,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGDAS_ATMOS_GEMPAK_dell.sh_06
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Expand Up @@ -38,7 +38,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGDAS_ATMOS_GEMPAK_dell.sh_12
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Expand Up @@ -38,7 +38,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGDAS_ATMOS_GEMPAK_dell.sh_18
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Expand Up @@ -38,7 +38,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGFS_ATMOS_GEMPAK_META_dell.sh_00
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Expand Up @@ -39,7 +39,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

##############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGFS_ATMOS_GEMPAK_META_dell.sh_06
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Expand Up @@ -39,7 +39,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

##############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGFS_ATMOS_GEMPAK_META_dell.sh_12
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Expand Up @@ -39,7 +39,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

##############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGFS_ATMOS_GEMPAK_META_dell.sh_18
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Expand Up @@ -39,7 +39,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

##############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGFS_ATMOS_GEMPAK_NCDC_UPAPGIF_dell.sh_00
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Expand Up @@ -38,7 +38,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

##############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGFS_ATMOS_GEMPAK_NCDC_UPAPGIF_dell.sh_06
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Expand Up @@ -38,7 +38,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

##############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGFS_ATMOS_GEMPAK_NCDC_UPAPGIF_dell.sh_12
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Expand Up @@ -38,7 +38,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

##############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGFS_ATMOS_GEMPAK_NCDC_UPAPGIF_dell.sh_18
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Expand Up @@ -38,7 +38,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

##############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGFS_ATMOS_GEMPAK_PGRB2_SPEC_dell.sh_00
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Expand Up @@ -37,7 +37,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGFS_ATMOS_GEMPAK_PGRB2_SPEC_dell.sh_06
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Expand Up @@ -37,7 +37,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGFS_ATMOS_GEMPAK_PGRB2_SPEC_dell.sh_12
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Expand Up @@ -37,7 +37,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGFS_ATMOS_GEMPAK_PGRB2_SPEC_dell.sh_18
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Expand Up @@ -37,7 +37,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGFS_ATMOS_GEMPAK_dell.sh_00
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Expand Up @@ -38,7 +38,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGFS_ATMOS_GEMPAK_dell.sh_06
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Expand Up @@ -38,7 +38,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGFS_ATMOS_GEMPAK_dell.sh_12
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Expand Up @@ -38,7 +38,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

############################################
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2 changes: 1 addition & 1 deletion driver/product/run_JGFS_ATMOS_GEMPAK_dell.sh_18
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Expand Up @@ -38,7 +38,7 @@ module load grib_util/1.1.0
###########################################
# Now set up GEMPAK/NTRANS environment
###########################################
module load gempak/7.3.1
module load gempak/7.3.3
module list

############################################
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2 changes: 1 addition & 1 deletion driver/product/run_postsnd.sh
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Expand Up @@ -29,7 +29,7 @@ module load CFP/2.0.1
module load python/3.6.3

module use -a /gpfs/dell1/nco/ops/nwpara/modulefiles/
module load gempak/7.3.1
module load gempak/7.3.3
module use /usrx/local/nceplibs/dev/NCEPLIBS/modulefiles
module load hdf5_parallel/1.10.6
module load netcdf_parallel/4.7.4
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2 changes: 1 addition & 1 deletion driver/product/run_postsnd.sh.dell
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Expand Up @@ -29,7 +29,7 @@ module load CFP/2.0.1
module load python/3.6.3

module use -a /gpfs/dell1/nco/ops/nwpara/modulefiles/
module load gempak/7.3.1
module load gempak/7.3.3
module use /usrx/local/nceplibs/dev/NCEPLIBS/modulefiles
module load hdf5_parallel/1.10.6
module load netcdf_parallel/4.7.4
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18 changes: 6 additions & 12 deletions ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis.ecf
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@@ -1,15 +1,15 @@
#! /bin/sh
#BSUB -q %QUEUE%
#BSUB -P %PROJ%
#BSUB -L /bin/sh
#BSUB -J %E%gdas_atmos_analysis_%CYC%
#BSUB -o %COM%/output/%ENVIR%/today/gdas_atmos_analysis_%CYC%.o%J
#BSUB -W 0:45
#BSUB -q %QUEUE%
#BSUB -P %PROJ%
##BSUB -W 0:45 # 11/02/2020 temporarily change
#BSUB -W 1:00
#BSUB -n 1000
#BSUB -R affinity[core(7)]
#BSUB -R span[ptile=4]
#BSUB -cwd /tmp

module purge
%include <head.h>
%include <envir-p3.h>

Expand All @@ -32,14 +32,12 @@ export model=gfs
############################################################
module load lsf/${lsf_ver}
module load impi/${impi_ver}
module load prod_util/${prod_util_ver}
module load prod_envir/${prod_envir_ver}
module load CFP/${CFP_ver}
module load python/${python_ver}
module load NetCDF-parallel/${netcdf_parallel_ver}
module load HDF5-parallel/${hdf5_parallel_ver}
module use -a /gpfs/dell1/nco/ops/nwprod/modulefiles/
module load crtm/${crtm_ver}
module load grib_util/${grib_util_ver}

module list

Expand All @@ -52,12 +50,8 @@ export FORT_BUFFERED=true
export OMP_NUM_THREADS_CY=28
export NTHREADS=$OMP_NUM_THREADS_CY
export NTHREADS_GSI=$threads
export COMPONENT=${COMPONENT:-atmos}
export ROTDIR=%COM%/$NET/$envir
export CDUMP=gdas
export cyc=%CYC%
export cycle=t%CYC%z
export CDATE=$PDY$cyc
export USE_CFP=YES
export PREINP=''

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13 changes: 3 additions & 10 deletions ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis_calc.ecf
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@@ -1,15 +1,14 @@
#! /bin/sh
#BSUB -q %QUEUE%
#BSUB -P %PROJ%
#BSUB -L /bin/sh
#BSUB -J %E%gdas_atmos_analysis_calc_%CYC%
#BSUB -o %COM%/output/%ENVIR%/today/gdas_atmos_analysis_calc_%CYC%.o%J
#BSUB -q %QUEUE%
#BSUB -P %PROJ%
#BSUB -W 0:10
#BSUB -n 140
#BSUB -R affinity[core(1)]
#BSUB -R span[ptile=28]
#BSUB -cwd /tmp

module purge
%include <head.h>
%include <envir-p3.h>

Expand All @@ -32,8 +31,6 @@ model=gfs
############################################################
module load lsf/${lsf_ver}
module load impi/${impi_ver}
module load prod_util/${prod_util_ver}
module load prod_envir/${prod_envir_ver}
module load python/${python_ver}
module load NetCDF-parallel/${netcdf_parallel_ver}
module load HDF5-parallel/${hdf5_parallel_ver}
Expand All @@ -43,12 +40,8 @@ module list
#############################################################
# WCOSS environment settings
#############################################################
export COMPONENT=${COMPONENT:-atmos}
export ROTDIR=%COM%/$NET/$envir
export CDUMP=gdas
export cyc=%CYC%
export cycle=t%CYC%z
export CDATE=$PDY$cyc
export USE_CFP=YES

############################################################
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12 changes: 3 additions & 9 deletions ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis_diag.ecf
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@@ -1,15 +1,14 @@
#! /bin/sh
#BSUB -q %QUEUE%
#BSUB -P %PROJ%
#BSUB -L /bin/sh
#BSUB -J %E%gdas_atmos_analysis_diag_%CYC%
#BSUB -o %COM%/output/%ENVIR%/today/gdas_atmos_analysis_diag_%CYC%.o%J
#BSUB -q %QUEUE%
#BSUB -P %PROJ%
#BSUB -W 0:10
#BSUB -n 112
#BSUB -R affinity[core(1)]
#BSUB -R span[ptile=28]
#BSUB -cwd /tmp

module purge
%include <head.h>
%include <envir-p3.h>

Expand All @@ -32,20 +31,15 @@ export model=gfs
############################################################
module load lsf/${lsf_ver}
module load impi/${impi_ver}
module load prod_util/${prod_util_ver}
module load CFP/${CFP_ver}

module list

#############################################################
# WCOSS environment settings
#############################################################
export COMPONENT=${COMPONENT:-atmos}
export ROTDIR=%COM%/$NET/$envir
export CDUMP=gdas
export cyc=%CYC%
export cycle=t%CYC%z
export CDATE=$PDY$cyc
export USE_CFP=YES

############################################################
Expand Down
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