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Update UFS for dust fix and remove nitrates by default #1989

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Merged
WalterKolczynski-NOAA merged 18 commits into from
Nov 7, 2023
Merged

Update UFS for dust fix and remove nitrates by default #1989

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cdae89e
Adding updated parameters needed for newest changes in FENGSHA
bbakernoaa Oct 26, 2023
f4c7137
Updating to remove the nitrogen inputs and the Ginoux scheme as they
bbakernoaa Oct 26, 2023
669b914
Remove the nitrogen component by default in support of EPx experiments
bbakernoaa Oct 26, 2023
30e554a
Update ufs-weather-model hash
bbakernoaa Oct 26, 2023
ef68bc8
remove nitrate tracers
bbakernoaa Oct 26, 2023
e76a868
comment out nitrogen, left in so if anyone wants to run with it they …
bbakernoaa Oct 26, 2023
32469c2
update scaling factor
bbakernoaa Oct 26, 2023
6c84764
update fengsha path
bbakernoaa Oct 26, 2023
e88c488
Merge remote-tracking branch 'emc/develop' into feature/gocart_update
bbakernoaa Oct 31, 2023
62d23a7
removing nitrates from the cap
bbakernoaa Oct 31, 2023
0cde37e
Removing nitrates by default from the inst_aod block
bbakernoaa Oct 31, 2023
51cc5e6
correcting uthres variable name
bbakernoaa Oct 31, 2023
08a251d
Add ability to overwrite in AERO_HISTORY
bbakernoaa Oct 31, 2023
652f289
remove whitespace
bbakernoaa Oct 31, 2023
be26458
update to latest hash
bbakernoaa Nov 6, 2023
b3f89c7
Merge remote-tracking branch 'emc/develop' into feature/gocart_update
bbakernoaa Nov 6, 2023
d35f88a
updating to none user path
bbakernoaa Nov 6, 2023
f791ff9
roll back to 63a43d9 when gocart update was merged
bbakernoaa Nov 6, 2023
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4 changes: 3 additions & 1 deletion parm/ufs/chem/DU2G_instance_DU.rc
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Expand Up @@ -41,6 +41,8 @@ pressure_lid_in_hPa: 0.01
emission_scheme: fengsha # choose among: fengsha, ginoux, k14

# FENGSHA settings
alpha: 0.04
alpha: 0.1
gamma: 1.0
soil_moisture_factor: 1
soil_drylimit_factor: 1
vertical_to_horizontal_flux_ratio_limit: 2.e-04
8 changes: 4 additions & 4 deletions parm/ufs/chem/ExtData.gbbepx
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Expand Up @@ -2,7 +2,7 @@

# GBBEPx
#--------------------------------------------------------------------------------------------------------------------------------
SU_BIOMASS NA N Y %y4-%m2-%d2t12:00:00 none none SO2 ExtData/nexus/GBBEPx/GBBEPx_all01GRID.emissions_v003_%y4%m2%d2.nc
OC_BIOMASS NA N Y %y4-%m2-%d2t12:00:00 none none OC ExtData/nexus/GBBEPx/GBBEPx_all01GRID.emissions_v003_%y4%m2%d2.nc
BC_BIOMASS NA N Y %y4-%m2-%d2t12:00:00 none none BC ExtData/nexus/GBBEPx/GBBEPx_all01GRID.emissions_v003_%y4%m2%d2.nc
EMI_NH3_BB NA N Y %y4-%m2-%d2t12:00:00 none none NH3 ExtData/nexus/GBBEPx/GBBEPx_all01GRID.emissions_v003_%y4%m2%d2.nc
SU_BIOMASS NA N Y %y4-%m2-%d2t12:00:00 none 0.7778 SO2 ExtData/nexus/GBBEPx/GBBEPx_all01GRID.emissions_v003_%y4%m2%d2.nc
OC_BIOMASS NA N Y %y4-%m2-%d2t12:00:00 none 0.7778 OC ExtData/nexus/GBBEPx/GBBEPx_all01GRID.emissions_v003_%y4%m2%d2.nc
BC_BIOMASS NA N Y %y4-%m2-%d2t12:00:00 none 0.7778 BC ExtData/nexus/GBBEPx/GBBEPx_all01GRID.emissions_v003_%y4%m2%d2.nc
# EMI_NH3_BB NA N Y %y4-%m2-%d2t12:00:00 none 0.7778 NH3 ExtData/nexus/GBBEPx/GBBEPx_all01GRID.emissions_v003_%y4%m2%d2.nc
39 changes: 18 additions & 21 deletions parm/ufs/chem/ExtData.other
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Expand Up @@ -7,16 +7,13 @@
TROPP 'Pa' Y N - 0.0 1.0 TROPP /dev/null:10000.

#====== Dust Imports =================================================
# Ginoux input files
DU_SRC NA N Y - none none du_src ExtData/Dust/gocart.dust_source.v5a.x1152_y721.nc

# FENGSHA input files. Note: regridding should be N or E - Use files with _FillValue != NaN
DU_CLAY '1' Y E - none none clayfrac ExtData/Dust/FENGSHA_p81_10km_inputs.nc
DU_SAND '1' Y E - none none sandfrac ExtData/Dust/FENGSHA_p81_10km_inputs.nc
DU_CLAY '1' Y E - none none clayfrac ExtData/nexus/FENGSHA/FENGSHA_2022_NESDIS_inputs_10km_v3.2.nc
DU_SAND '1' Y E - none none sandfrac ExtData/nexus/FENGSHA/FENGSHA_2022_NESDIS_inputs_10km_v3.2.nc
DU_SILT '1' Y E - none none siltfrac /dev/null
DU_SSM '1' Y E - none none ssm /dev/null:1.0
DU_RDRAG '1' Y E %y4-%m2-%d2t12:00:00 none none albedo_drag ExtData/Dust/FENGSHA_p81_10km_inputs.nc
DU_UTHRES '1' Y E - none none uthres ExtData/Dust/FENGSHA_p81_10km_inputs.nc
DU_SSM '1' Y E - none none sep ExtData/nexus/FENGSHA/FENGSHA_2022_NESDIS_inputs_10km_v3.2.nc
DU_RDRAG '1' Y E %y4-%m2-%d2t12:00:00 none none albedo_drag ExtData/nexus/FENGSHA/FENGSHA_2022_NESDIS_inputs_10km_v3.2.nc
DU_UTHRES '1' Y E - none none uthres_bnu ExtData/nexus/FENGSHA/FENGSHA_2022_NESDIS_inputs_10km_v3.2.nc

#====== Sulfate Sources =================================================
# Anthropogenic (BF & FF) emissions -- allowed to input as two layers
Expand Down Expand Up @@ -135,16 +132,16 @@ BRC_AVIATION_CRS NA Y Y %y4-%m2-%d2t12:00:00 none none oc_aviation /dev/null
# SOA production
pSOA_BIOB_VOC NA Y Y %y4-%m2-%d2t12:00:00 none none biofuel /dev/null

# ======= Nitrate Sources ========
EMI_NH3_AG 'kg m-2 s-1' N Y %y4-%m2-%d2T12:00:00 none none NH3_ag ExtData/nexus/CEDS/v2019/%y4/CEDS.2019.emis.%y4%m2%d2.nc
EMI_NH3_EN 'kg m-2 s-1' N Y %y4-%m2-%d2T12:00:00 none none NH3_en /dev/null
EMI_NH3_IN 'kg m-2 s-1' N Y %y4-%m2-%d2T12:00:00 none none NH3_in ExtData/nexus/CEDS/v2019/%y4/CEDS.2019.emis.%y4%m2%d2.nc
EMI_NH3_RE 'kg m-2 s-1' N Y %y4-%m2-%d2T12:00:00 none none NH3_re ExtData/nexus/CEDS/v2019/%y4/CEDS.2019.emis.%y4%m2%d2.nc
EMI_NH3_TR 'kg m-2 s-1' N Y %y4-%m2-%d2T12:00:00 none none NH3_tr ExtData/nexus/CEDS/v2019/%y4/CEDS.2019.emis.%y4%m2%d2.nc
EMI_NH3_OC 'kg m-2 s-1' Y Y %y4-%m2-%d2T12:00:00 none none emiss_ocn ExtData/PIESA/sfc/GEIA.emis_NH3.ocean.x576_y361.t12.20080715_12z.nc4

# --------------------------------------------------------------
# If using 64 levels please replace this section with the correct values (ie replace 127 with 64)
NITRATE_HNO3 'mol mol-1' Y N %y4-%m2-%d2T12:00:00 none 0.20 hno3 ExtData/PIESA/L127/GMI.vmr_HNO3.x144_y91.t12.2006.nc4
# --------------------------------------------------------------
NI_regionMask NA Y V - none none REGION_MASK ExtData/PIESA/sfc/ARCTAS.region_mask.x540_y361.2008.nc
# # ======= Nitrate Sources ========
# EMI_NH3_AG 'kg m-2 s-1' N Y %y4-%m2-%d2T12:00:00 none none NH3_ag ExtData/nexus/CEDS/v2019/%y4/CEDS.2019.emis.%y4%m2%d2.nc
# EMI_NH3_EN 'kg m-2 s-1' N Y %y4-%m2-%d2T12:00:00 none none NH3_en /dev/null
# EMI_NH3_IN 'kg m-2 s-1' N Y %y4-%m2-%d2T12:00:00 none none NH3_in ExtData/nexus/CEDS/v2019/%y4/CEDS.2019.emis.%y4%m2%d2.nc
# EMI_NH3_RE 'kg m-2 s-1' N Y %y4-%m2-%d2T12:00:00 none none NH3_re ExtData/nexus/CEDS/v2019/%y4/CEDS.2019.emis.%y4%m2%d2.nc
# EMI_NH3_TR 'kg m-2 s-1' N Y %y4-%m2-%d2T12:00:00 none none NH3_tr ExtData/nexus/CEDS/v2019/%y4/CEDS.2019.emis.%y4%m2%d2.nc
# EMI_NH3_OC 'kg m-2 s-1' Y Y %y4-%m2-%d2T12:00:00 none none emiss_ocn ExtData/PIESA/sfc/GEIA.emis_NH3.ocean.x576_y361.t12.20080715_12z.nc4

# # --------------------------------------------------------------
# # If using 64 levels please replace this section with the correct values (ie replace 127 with 64)
# NITRATE_HNO3 'mol mol-1' Y N %y4-%m2-%d2T12:00:00 none 0.20 hno3 ExtData/PIESA/L127/GMI.vmr_HNO3.x144_y91.t12.2006.nc4
# # --------------------------------------------------------------
# NI_regionMask NA Y V - none none REGION_MASK ExtData/PIESA/sfc/ARCTAS.region_mask.x540_y361.2008.nc
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WalterKolczynski-NOAA marked this conversation as resolved.
8 changes: 4 additions & 4 deletions parm/ufs/chem/ExtData.qfed
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Expand Up @@ -2,7 +2,7 @@

# QFED
#--------------------------------------------------------------------------------------------------------------------------------
SU_BIOMASS NA N Y %y4-%m2-%d2t12:00:00 none none biomass ExtData/nexus/QFED/%y4/%m2/qfed2.emis_so2.006.%y4%m2%d2.nc4
OC_BIOMASS NA N Y %y4-%m2-%d2t12:00:00 none none biomass ExtData/nexus/QFED/%y4/%m2/qfed2.emis_oc.006.%y4%m2%d2.nc4
BC_BIOMASS NA N Y %y4-%m2-%d2t12:00:00 none none biomass ExtData/nexus/QFED/%y4/%m2/qfed2.emis_bc.006.%y4%m2%d2.nc4
EMI_NH3_BB NA N Y %y4-%m2-%d2t12:00:00 none none biomass ExtData/nexus/QFED/%y4/%m2/qfed2.emis_nh3.006.%y4%m2%d2.nc4
SU_BIOMASS NA N Y %y4-%m2-%d2t12:00:00 none 0.7778 biomass ExtData/nexus/QFED/%y4/%m2/qfed2.emis_so2.006.%y4%m2%d2.nc4
OC_BIOMASS NA N Y %y4-%m2-%d2t12:00:00 none 0.7778 biomass ExtData/nexus/QFED/%y4/%m2/qfed2.emis_oc.006.%y4%m2%d2.nc4
BC_BIOMASS NA N Y %y4-%m2-%d2t12:00:00 none 0.7778 biomass ExtData/nexus/QFED/%y4/%m2/qfed2.emis_bc.006.%y4%m2%d2.nc4
# EMI_NH3_BB NA N Y %y4-%m2-%d2t12:00:00 none 0.7778 biomass ExtData/nexus/QFED/%y4/%m2/qfed2.emis_nh3.006.%y4%m2%d2.nc4
2 changes: 1 addition & 1 deletion parm/ufs/chem/GOCART2G_GridComp.rc
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Expand Up @@ -31,7 +31,7 @@ PASSIVE_INSTANCES_SU:
ACTIVE_INSTANCES_CA: CA.oc CA.bc # CA.oc.data CA.bc.data
PASSIVE_INSTANCES_CA:

ACTIVE_INSTANCES_NI: NI # NI.data
ACTIVE_INSTANCES_NI: # NI # NI.data
PASSIVE_INSTANCES_NI:

# Set optics parameters
Expand Down
5 changes: 0 additions & 5 deletions parm/ufs/chem/gocart_tracer.list
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Expand Up @@ -16,10 +16,5 @@ seas2
seas3
seas4
seas5
nh3
nh4a
no3an1
no3an2
no3an3
pm25
pm10
10 changes: 5 additions & 5 deletions parm/ufs/fv3/diag_table.aero
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Expand Up @@ -19,10 +19,10 @@
"gfs_dyn", "seas3", "seas3", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "seas4", "seas4", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "seas5", "seas5", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "nh3", "nh3", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "nh4a", "nh4a", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "no3an1", "no3an1", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "no3an2", "no3an2", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "no3an3", "no3an3", "fv3_history", "all", .false., "none", 2
# "gfs_dyn", "nh3", "nh3", "fv3_history", "all", .false., "none", 2
# "gfs_dyn", "nh4a", "nh4a", "fv3_history", "all", .false., "none", 2
# "gfs_dyn", "no3an1", "no3an1", "fv3_history", "all", .false., "none", 2
# "gfs_dyn", "no3an2", "no3an2", "fv3_history", "all", .false., "none", 2
# "gfs_dyn", "no3an3", "no3an3", "fv3_history", "all", .false., "none", 2
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WalterKolczynski-NOAA marked this conversation as resolved.
"gfs_dyn", "pm25", "pm25", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "pm10", "pm10", "fv3_history", "all", .false., "none", 2
50 changes: 25 additions & 25 deletions parm/ufs/fv3/field_table.aero
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Expand Up @@ -89,31 +89,31 @@
"units", "ug/kg"
"tracer_usage", "chemistry"
"profile_type", "fixed", "surface_value=0.0" /
"TRACER", "atmos_mod", "nh3"
"longname", "primary NH3 mixing ratio"
"units", "ug/kg"
"tracer_usage", "chemistry"
"profile_type", "fixed", "surface_value=0.0" /
"TRACER", "atmos_mod", "nh4a"
"longname", "primary NH4a mixing ratio"
"units", "ug/kg"
"tracer_usage", "chemistry"
"profile_type", "fixed", "surface_value=0.0" /
"TRACER", "atmos_mod", "no3an1"
"longname", "primary NO3an1 mixing ratio"
"units", "ug/kg"
"tracer_usage", "chemistry"
"profile_type", "fixed", "surface_value=0.0" /
"TRACER", "atmos_mod", "no3an2"
"longname", "primary NO3an2 mixing ratio"
"units", "ug/kg"
"tracer_usage", "chemistry"
"profile_type", "fixed", "surface_value=0.0" /
"TRACER", "atmos_mod", "no3an3"
"longname", "primary NO3an3 mixing ratio"
"units", "ug/kg"
"tracer_usage", "chemistry"
"profile_type", "fixed", "surface_value=0.0" /
# "TRACER", "atmos_mod", "nh3"
# "longname", "primary NH3 mixing ratio"
# "units", "ug/kg"
# "tracer_usage", "chemistry"
# "profile_type", "fixed", "surface_value=0.0" /
# "TRACER", "atmos_mod", "nh4a"
# "longname", "primary NH4a mixing ratio"
# "units", "ug/kg"
# "tracer_usage", "chemistry"
# "profile_type", "fixed", "surface_value=0.0" /
# "TRACER", "atmos_mod", "no3an1"
# "longname", "primary NO3an1 mixing ratio"
# "units", "ug/kg"
# "tracer_usage", "chemistry"
# "profile_type", "fixed", "surface_value=0.0" /
# "TRACER", "atmos_mod", "no3an2"
# "longname", "primary NO3an2 mixing ratio"
# "units", "ug/kg"
# "tracer_usage", "chemistry"
# "profile_type", "fixed", "surface_value=0.0" /
# "TRACER", "atmos_mod", "no3an3"
# "longname", "primary NO3an3 mixing ratio"
# "units", "ug/kg"
# "tracer_usage", "chemistry"
# "profile_type", "fixed", "surface_value=0.0" /
# diagnostic PM tracers
"TRACER", "atmos_mod", "pm25"
"longname", "primary PM25 mixing ratio"
Expand Down
2 changes: 1 addition & 1 deletion sorc/checkout.sh
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Expand Up @@ -151,7 +151,7 @@ source "${topdir}/../workflow/gw_setup.sh"
# The checkout version should always be a speciifc commit (hash or tag), not a branch
errs=0
# Checkout UFS submodules in parallel
checkout "ufs_model.fd" "https://github.com/ufs-community/ufs-weather-model" "${ufs_model_hash:-4d05445}" "8" ; errs=$((errs + $?))
checkout "ufs_model.fd" "https://github.com/ufs-community/ufs-weather-model" "${ufs_model_hash:-63a43d9}" "8" ; errs=$((errs + $?))

# Run all other checkouts simultaneously with just 1 core each to handle submodules.
checkout "wxflow" "https://github.com/NOAA-EMC/wxflow" "528f5ab" &
Expand Down