Update UFS to Sept 9 version

Externals.cfg

@@ -1,7 +1,7 @@
 # External sub-modules of global-workflow
 
 [UFS]
-tag = Prototype-P8
+tag = 3c3548d
 local_path = sorc/ufs_model.fd
 repo_url = https://github.com/ufs-community/ufs-weather-model.git
 protocol = git

modulefiles/module_base.hera.lua

@@ -8,6 +8,8 @@ load(pathJoin("hpc", "1.1.0"))
 load(pathJoin("hpc-intel", "18.0.5.274"))
 load(pathJoin("hpc-impi", "2018.0.4"))
 
+load(pathJoin("cmake", "3.20.1"))
+
 load(pathJoin("hpss", "hpss"))
 load(pathJoin("nco", "4.9.1"))
 load(pathJoin("gempak", "7.4.2"))
@@ -25,8 +27,8 @@ load(pathJoin("png", "1.6.35"))
 
 load(pathJoin("hdf5", "1.10.6"))
 load(pathJoin("netcdf", "4.7.4"))
-load(pathJoin("pio", "2.5.2"))
-load(pathJoin("esmf", "8.2.1b04"))
+load(pathJoin("pio", "2.5.7"))
+load(pathJoin("esmf", "8.3.0b09"))
 load(pathJoin("fms", "2021.03"))
 
 load(pathJoin("bacio", "2.4.1"))

modulefiles/module_base.orion.lua

@@ -8,6 +8,8 @@ load(pathJoin("hpc", "1.1.0"))
 load(pathJoin("hpc-intel", "2018.4"))
 load(pathJoin("hpc-impi", "2018.4"))
 
+load(pathJoin("cmake", "3.22.1"))
+
 load(pathJoin("nco", "4.8.1"))
 load(pathJoin("gempak", "7.5.1"))
 load(pathJoin("ncl", "6.6.2"))
@@ -24,8 +26,8 @@ load(pathJoin("png", "1.6.35"))
 
 load(pathJoin("hdf5", "1.10.6"))
 load(pathJoin("netcdf", "4.7.4"))
-load(pathJoin("pio", "2.5.2"))
-load(pathJoin("esmf", "8.2.1b04"))
+load(pathJoin("pio", "2.5.7"))
+load(pathJoin("esmf", "8.3.0b09"))
 load(pathJoin("fms", "2021.03"))
 
 load(pathJoin("bacio", "2.4.1"))

modulefiles/modulefile.ww3.hera.lua

@@ -20,4 +20,4 @@ load(pathJoin("g2", "3.4.5"))
 load(pathJoin("hdf5", "1.10.6"))
 load(pathJoin("netcdf", "4.7.4"))
 
-load(pathJoin("w3nco", "2.4.1"))
+load(pathJoin("w3emc", "2.9.2"))

modulefiles/modulefile.ww3.orion.lua

@@ -22,4 +22,4 @@ load(pathJoin("g2", "3.4.5"))
 load(pathJoin("hdf5", "1.10.6"))
 load(pathJoin("netcdf", "4.7.4"))
 
-load(pathJoin("w3nco", "2.4.1"))
+load(pathJoin("w3emc", "2.9.2"))

modulefiles/modulefile.ww3.s4.lua

@@ -18,4 +18,4 @@ load(pathJoin("g2", "3.4.1"))
 load(pathJoin("hdf5", "1.10.6"))
 load(pathJoin("netcdf", "4.7.4"))
 
-load(pathJoin("w3nco", "2.4.1"))
+load(pathJoin("w3emc", "2.9.2"))

modulefiles/modulefile.ww3.wcoss2.lua

@@ -19,4 +19,4 @@ load(pathJoin("g2", "3.4.5"))
 load(pathJoin("hdf5", "1.10.6"))
 load(pathJoin("netcdf", "4.7.4"))
 
-load(pathJoin("w3nco", "2.4.1"))
+load(pathJoin("w3emc", "2.9.2"))

parm/config/config.resources

@@ -311,6 +311,11 @@ elif [ ${step} = "fcst" ]; then
             # Aerosol model only uses the atm model PETS
             export CHMPETS=${ATMPETS}
             # Aerosol model runs on same PETs as ATM, so don't add to $NTASKS_TOT
+
+            if [[ ${machine} == "HERA" ]]; then
+                # Need more memory on Hera for aerosols, so increase threads to spread it out
+                nth_fv3_gfs=${nth_fv3_gfs:-4}
+            fi
         fi
 
         # If using in-line post, add the write tasks to the ATMPETS

sorc/build_ufs.sh

@@ -33,6 +33,6 @@ CLEAN_AFTER=NO
 
 ./tests/compile.sh $MACHINE_ID "$MAKE_OPT" $COMPILE_NR $CLEAN_BEFORE $CLEAN_AFTER
 mv ./tests/fv3_${COMPILE_NR}.exe ./tests/ufs_model.x
-mv ./tests/modules.fv3_${COMPILE_NR} ./tests/modules.ufs_model
+mv ./tests/modules.fv3_${COMPILE_NR}.lua ./tests/modules.ufs_model.lua
 
 exit 0

sorc/checkout.sh

@@ -107,7 +107,6 @@ checkout_gsi="NO"
 checkout_gdas="NO"
 checkout_gtg="NO"
 checkout_wafs="NO"
-ufs_model_hash="Prototype-P8"
 
 # Parse command line arguments
 while getopts ":chgum:o" option; do
@@ -153,9 +152,9 @@ mkdir -p "${logdir}"
 # The checkout version should always be a speciifc commit (hash or tag), not a branch
 errs=0
 checkout "gfs_utils.fd"    "https://github.com/NOAA-EMC/gfs-utils"              "7bf599f"          ; errs=$((errs + $?))
-checkout "ufs_model.fd"    "https://github.com/ufs-community/ufs-weather-model" "${ufs_model_hash}"; errs=$((errs + $?))
-checkout "ufs_utils.fd"    "https://github.com/ufs-community/UFS_UTILS.git"     "8b990c0"          ; errs=$((errs + $?))
-checkout "verif-global.fd" "https://github.com/NOAA-EMC/EMC_verif-global.git"   "c267780"          ; errs=$((errs + $?))
+checkout "ufs_model.fd"    "https://github.com/ufs-community/ufs-weather-model" "${ufs_model_hash:-3c3548d}" ; errs=$((errs + $?))
+checkout "ufs_utils.fd"    "https://github.com/ufs-community/UFS_UTILS.git"     "8b990c0"                    ; errs=$((errs + $?))
+checkout "verif-global.fd" "https://github.com/NOAA-EMC/EMC_verif-global.git"   "c267780"                    ; errs=$((errs + $?))
 
 if [[ ${checkout_gsi} == "YES" ]]; then
   checkout "gsi_enkf.fd"     "https://github.com/NOAA-EMC/GSI.git"         "67f5ab4"; errs=$((errs + $?))

ush/forecast_postdet.sh

@@ -1014,6 +1014,13 @@ GOCART_postdet() {
     HH=$(echo $VDATE | cut -c9-10)
     SS=$((10#$HH*3600))
 
+    #
+    # Temporarily delete existing files due to noclobber in GOCART
+    #
+    if [[ -e "${COMOUTaero}/gocart.inst_aod.${YYYY}${MM}${DD}_${HH}00z.nc4" ]]; then
+      rm "${COMOUTaero}/gocart.inst_aod.${YYYY}${MM}${DD}_${HH}00z.nc4"
+    fi
+
     $NLN $COMOUTaero/gocart.inst_aod.${YYYY}${MM}${DD}_${HH}00z.nc4 $DATA/gocart.inst_aod.${YYYY}${MM}${DD}_${HH}00z.nc4
   done
 }

ush/parsing_namelists_CICE.sh

@@ -80,8 +80,6 @@ cat > ice_in <<eof
    restart_FY   = .false.
    tr_lvl       = .true.
    restart_lvl  = .false.
-   tr_pond_cesm = .false.
-   restart_pond_cesm = .false.
    tr_pond_topo = .false.
    restart_pond_topo = .false.
    tr_pond_lvl  = $tr_pond_lvl