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Merged
RussTreadon-NOAA merged 9 commits into from
Jan 25, 2023
Merged

add pm2.5 DA for rrfs-smoke #482

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58d2180
1. add copy ges for rrfs-cmaq
hongli-wang Aug 29, 2022
e8d086e
Refine PM2.5 DA for RRFS-SMOKE
hongli-wang Oct 14, 2022
274e1be
Refine use of PM2.5 for RRFS-SD;
hongli-wang Oct 18, 2022
08196ee
Move getpointer out of obs do loop for rrfs_sd pm2.5 assimilation
hongli-wang Dec 16, 2022
20ac75e
rebase to the latest EMC GSI develop branch
hongli-wang Dec 21, 2022
34b96be
change submodule for fix to use github
CoryMartin-NOAA Jan 23, 2023
7dbfb18
Merge remote-tracking branch 'upstream/develop' into feature/RRFS-CMAQ
CoryMartin-NOAA Jan 23, 2023
b6ab52a
update submodule to resolve change
CoryMartin-NOAA Jan 23, 2023
08b212f
Change variables(iuv,ndynvario3d,ntracerio3d) to i_kind and clear code.
hongli-wang Jan 24, 2023
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7 changes: 5 additions & 2 deletions src/gsi/chemmod.f90
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Original file line number Diff line number Diff line change
Expand Up @@ -40,7 +40,7 @@ module chemmod
public :: naero_cmaq_fv3,aeronames_cmaq_fv3,imodes_cmaq_fv3

! fv3smoke
public :: naero_smoke_fv3,aeronames_smoke_fv3
public :: naero_smoke_fv3,aeronames_smoke_fv3,pm2_5_innov_threshold

public :: naero_gocart_wrf,aeronames_gocart_wrf

Expand Down Expand Up @@ -79,6 +79,8 @@ module chemmod
integer(i_kind) :: icvt_cmaq_fv3
real(r_kind) :: raod_radius_mean_scale,raod_radius_std_scale
real(r_kind) :: ppmv_conv = 96.06_r_kind/28.964_r_kind*1.0e+3_r_kind
real(r_kind) :: pm2_5_innov_threshold

logical :: wrf_pm2_5

logical :: lread_ext_aerosol ! if true, will read in aerosols from aerfXX rather than from sigfXX
Expand All @@ -98,7 +100,7 @@ module chemmod
code_pm25_anowbufr=102,code_pm10_ncbufr=code_pm25_ncbufr,&
code_pm10_anowbufr=code_pm25_anowbufr

real(r_kind),parameter :: pm2_5_teom_max=100.0_r_kind !ug/m3
real(r_kind),parameter :: pm2_5_teom_max=900.0_r_kind !ug/m3
!some parameters need to be put here since convinfo file won't
!accomodate, stands for maximum realistic value of surface pm2.5
real(r_kind),parameter :: pm10_teom_max=150.0_r_kind !ug/m3
Expand Down Expand Up @@ -305,6 +307,7 @@ subroutine init_chem
laeroana_gocart = .false.
laeroana_fv3cmaq = .false. ! .true. for performing aerosol analysis for regional FV3-CMAQ model(Please other parameters requred in gsimod.F90)
laeroana_fv3smoke = .false.
pm2_5_innov_threshold = 20.0_r_kind
l_aoderr_table = .false.
icvt_cmaq_fv3 = 1 ! 1. Control variable is individual aerosol specie; 2: CV is total mass per I,J,K mode
raod_radius_mean_scale = 1.0_r_kind ! Tune radius of particles when calculating AOD using CRTM
Expand Down
150 changes: 136 additions & 14 deletions src/gsi/gsi_rfv3io_mod.f90
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Expand Up @@ -21,7 +21,8 @@ module gsi_rfv3io_mod
! 2022-03-15 Hu - add code to read/write 2m T and Q for they will be
! used as background for surface observation operator
! 2022-04-15 Wang - add IO for regional FV3-CMAQ (RRFS-CMAQ) model

! 2022-08-10 Wang - add IO for regional FV3-SMOKE (RRFS-SMOKE) model
!
! subroutines included:
! sub gsi_rfv3io_get_grid_specs
! sub read_fv3_files
Expand Down Expand Up @@ -54,6 +55,8 @@ module gsi_rfv3io_mod
use guess_grids, only: nfldsig,ntguessig,ifilesig
use rapidrefresh_cldsurf_mod, only: i_use_2mq4b,i_use_2mt4b
use chemmod, only: naero_cmaq_fv3,aeronames_cmaq_fv3,imodes_cmaq_fv3,laeroana_fv3cmaq
use chemmod, only: naero_smoke_fv3,aeronames_smoke_fv3,laeroana_fv3smoke

implicit none
public type_fv3regfilenameg
public bg_fv3regfilenameg
Expand Down Expand Up @@ -87,22 +90,23 @@ module gsi_rfv3io_mod
type(sub2grid_info) :: grd_fv3lam_dynvar_ionouv
type(sub2grid_info) :: grd_fv3lam_tracer_ionouv
type(sub2grid_info) :: grd_fv3lam_tracerchem_ionouv
type(sub2grid_info) :: grd_fv3lam_tracersmoke_ionouv
type(sub2grid_info) :: grd_fv3lam_uv
integer(i_kind) ,parameter:: ndynvarslist=13, ntracerslist=8

character(len=max_varname_length), dimension(ndynvarslist), parameter :: &
vardynvars = [character(len=max_varname_length) :: &
"u","v","u_w","u_s","v_w","v_s","t","tv","tsen","w","delp","ps","delzinc"]
character(len=max_varname_length), dimension(ntracerslist+naero_cmaq_fv3+7), parameter :: &
character(len=max_varname_length), dimension(ntracerslist+naero_cmaq_fv3+7+naero_smoke_fv3), parameter :: &
vartracers = [character(len=max_varname_length) :: &
'q','oz','ql','qi','qr','qs','qg','qnr',aeronames_cmaq_fv3,'pm25at','pm25ac','pm25co','pm2_5','amassi','amassj','amassk']
character(len=max_varname_length), dimension(15+naero_cmaq_fv3+7), parameter :: &
'q','oz','ql','qi','qr','qs','qg','qnr',aeronames_cmaq_fv3,'pm25at','pm25ac','pm25co','pm2_5','amassi','amassj','amassk',aeronames_smoke_fv3]
character(len=max_varname_length), dimension(15+naero_cmaq_fv3+7+naero_smoke_fv3), parameter :: &
varfv3name = [character(len=max_varname_length) :: &
'u','v','W','T','delp','sphum','o3mr','liq_wat','ice_wat','rainwat','snowwat','graupel','rain_nc','ps','DZ', &
aeronames_cmaq_fv3,'pm25at','pm25ac','pm25co','pm2_5','amassi','amassj','amassk'], &
aeronames_cmaq_fv3,'pm25at','pm25ac','pm25co','pm2_5','amassi','amassj','amassk',aeronames_smoke_fv3], &
vgsiname = [character(len=max_varname_length) :: &
'u','v','w','tsen','delp','q','oz','ql','qi','qr','qs','qg','qnr','ps','delzinc', &
aeronames_cmaq_fv3,'pm25at','pm25ac','pm25co','pm2_5','amassi','amassj','amassk']
aeronames_cmaq_fv3,'pm25at','pm25ac','pm25co','pm2_5','amassi','amassj','amassk',aeronames_smoke_fv3]
character(len=max_varname_length),dimension(:),allocatable:: name_metvars2d
character(len=max_varname_length),dimension(:),allocatable:: name_metvars3d
character(len=max_varname_length),dimension(:),allocatable:: name_chemvars3d
Expand All @@ -125,7 +129,8 @@ module gsi_rfv3io_mod
public :: k_slmsk,k_tsea,k_vfrac,k_vtype,k_stype,k_zorl,k_smc,k_stc
public :: k_snwdph,k_f10m,mype_2d,n2d,k_orog,k_psfc,k_t2m,k_q2m
public :: ijns,ijns2d,displss,displss2d,ijnz,displsz_g
public :: fv3lam_io_dynmetvars3d_nouv,fv3lam_io_tracermetvars3d_nouv,fv3lam_io_tracerchemvars3d_nouv
public :: fv3lam_io_dynmetvars3d_nouv,fv3lam_io_tracermetvars3d_nouv
public :: fv3lam_io_tracerchemvars3d_nouv,fv3lam_io_tracersmokevars3d_nouv
public :: fv3lam_io_dynmetvars2d_nouv,fv3lam_io_tracermetvars2d_nouv

integer(i_kind) mype_u,mype_v,mype_t,mype_q,mype_p,mype_delz,mype_oz,mype_ql
Expand Down Expand Up @@ -154,6 +159,7 @@ module gsi_rfv3io_mod
character(len=max_varname_length),allocatable,dimension(:) :: fv3lam_io_tracermetvars3d_nouv
! copy of cvars3d excluding uv 3-d fields
character(len=max_varname_length),allocatable,dimension(:) :: fv3lam_io_tracerchemvars3d_nouv
character(len=max_varname_length),allocatable,dimension(:) :: fv3lam_io_tracersmokevars3d_nouv
! copy of cvars3d excluding uv 3-d fields
character(len=max_varname_length),allocatable,dimension(:) :: fv3lam_io_dynmetvars2d_nouv
! copy of cvars3d excluding uv 3-d fields
Expand All @@ -166,7 +172,8 @@ module gsi_rfv3io_mod
type(gsi_bundle):: gsibundle_fv3lam_dynvar_nouv
type(gsi_bundle):: gsibundle_fv3lam_tracer_nouv
type(gsi_bundle):: gsibundle_fv3lam_tracerchem_nouv

type(gsi_bundle):: gsibundle_fv3lam_tracersmoke_nouv

contains
subroutine fv3regfilename_init(this,it)
implicit None
Expand Down Expand Up @@ -873,6 +880,9 @@ subroutine read_fv3_netcdf_guess(fv3filenamegin)
real(r_kind),dimension(:,:,:),pointer::ges_amassj=>NULL()
real(r_kind),dimension(:,:,:),pointer::ges_amassk=>NULL()

real(r_kind),dimension(:,:,:),pointer::ges_smoke=>NULL()
real(r_kind),dimension(:,:,:),pointer::ges_dust=>NULL()


character(len=max_varname_length) :: vartem=""
character(len=64),dimension(:,:),allocatable:: names !to be same as in the grid the dummy sub2grid_info
Expand All @@ -881,7 +891,8 @@ subroutine read_fv3_netcdf_guess(fv3filenamegin)
integer(i_kind),dimension(:,:),allocatable:: uvlnames
integer(i_kind):: inner_vars,numfields
integer(i_kind):: ndynvario2d,ntracerio2d,ilev,jdynvar,jtracer
integer(r_kind):: iuv,ndynvario3d,ntracerio3d,ntracerchemio3d
integer(i_kind):: iuv,ndynvario3d,ntracerio3d
integer(i_kind):: ntracerchemio3d,ntracersmokeio3d
integer(i_kind):: loc_id,ncfmt

!clt this block is still maintained for they would be needed for a certain 2d fields IO
Expand Down Expand Up @@ -915,15 +926,15 @@ subroutine read_fv3_netcdf_guess(fv3filenamegin)
allocate( name_metvars3d(GSI_MetGuess_Bundle(it)%n3d))
end if

if (laeroana_fv3cmaq) then
if (laeroana_fv3cmaq.or.laeroana_fv3smoke) then
if (.not.allocated(name_chemvars3d)) then
allocate( name_chemvars3d(GSI_ChemGuess_Bundle(it)%n3d))
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endif
endif

call gsi_bundleinquire (GSI_MetGuess_Bundle(it),'shortnames::2d', name_metvars2d,istatus)
call gsi_bundleinquire (GSI_MetGuess_Bundle(it),'shortnames::3d', name_metvars3d,istatus)
if (laeroana_fv3cmaq) then
if (laeroana_fv3cmaq.or.laeroana_fv3smoke) then
call gsi_bundleinquire (GSI_ChemGuess_Bundle(it),'shortnames::3d', name_chemvars3d,istatus)
endif

Expand All @@ -934,7 +945,7 @@ subroutine read_fv3_netcdf_guess(fv3filenamegin)
do i=1,GSI_MetGuess_Bundle(it)%n3d
write(6,*)'metvardeb333-3d name ', trim(name_metvars3d(i))
enddo
if (laeroana_fv3cmaq) then
if (laeroana_fv3cmaq.or.laeroana_fv3smoke) then
do i=1,GSI_ChemGuess_Bundle(it)%n3d
write(6,*)'chemvardeb333-3d name ', trim(name_chemvars3d(i))
enddo
Expand Down Expand Up @@ -980,6 +991,10 @@ subroutine read_fv3_netcdf_guess(fv3filenamegin)
if (laeroana_fv3cmaq) then
allocate(fv3lam_io_tracerchemvars3d_nouv(naero_cmaq_fv3+7))
endif

if (laeroana_fv3smoke) then
allocate(fv3lam_io_tracersmokevars3d_nouv(naero_smoke_fv3+1))
endif

jdynvar=0
jtracer=0
Expand Down Expand Up @@ -1101,6 +1116,36 @@ subroutine read_fv3_netcdf_guess(fv3filenamegin)

endif !laeroana_fv3cmaq

if (laeroana_fv3smoke) then
jtracer = 0
!name_chemvars3d chemguess from anainfo
do i=1,size(name_chemvars3d)
vartem=trim(name_chemvars3d(i))
if (ifindstrloc(aeronames_smoke_fv3,trim(vartem)) > 0) then
jtracer=jtracer+1
fv3lam_io_tracersmokevars3d_nouv(jtracer)=trim(vartem)
write(6,*)'the chemvarname ',jtracer,vartem,' is found '
if (trim(vartem) == "pm2_5")then
write(6,*)'the chemvarname ',vartem,' will be calculated.'
endif

else
if (trim(vartem) /= "pm2_5")then
write(6,*)'the chemvarname ',vartem,' is not in aeronames_smoke_fv3 !!!'
call flush(6)
endif
endif
enddo
ntracersmokeio3d=jtracer+1
fv3lam_io_tracersmokevars3d_nouv(jtracer+1)="pm2_5"
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if (mype == 0) then
write(6,*) ' fv3lam_io_tracersmokevars3d_nouv is',(trim(fv3lam_io_tracersmokevars3d_nouv(i)),i=1,ntracersmokeio3d)
endif

endif !laeroana_fv3smoke


if (allocated(fv3lam_io_dynmetvars2d_nouv) ) then
call gsi_bundlecreate(gsibundle_fv3lam_dynvar_nouv,GSI_MetGuess_Bundle(it)%grid,'gsibundle_fv3lam_dynvar_nouv',istatus,&
names2d=fv3lam_io_dynmetvars2d_nouv,names3d=fv3lam_io_dynmetvars3d_nouv)
Expand All @@ -1127,6 +1172,14 @@ subroutine read_fv3_netcdf_guess(fv3filenamegin)
endif
endif

if (laeroana_fv3smoke) then
if (allocated(fv3lam_io_tracersmokevars3d_nouv) ) then
call gsi_bundlecreate(gsibundle_fv3lam_tracersmoke_nouv,GSI_ChemGuess_Bundle(it)%grid,'gsibundle_fv3lam_tracersmoke_nouv',istatus,&
names3d=fv3lam_io_tracersmokevars3d_nouv)
endif
endif


inner_vars=1
numfields=inner_vars*(ndynvario3d*grd_a%nsig+ndynvario2d)
allocate(lnames(1,numfields),names(1,numfields))
Expand Down Expand Up @@ -1183,6 +1236,25 @@ subroutine read_fv3_netcdf_guess(fv3filenamegin)

endif

if (laeroana_fv3smoke) then
inner_vars=1
numfields=inner_vars*(ntracersmokeio3d*grd_a%nsig)
deallocate(lnames,names)
allocate(lnames(1,numfields),names(1,numfields))
ilev=1
do i=1,ntracersmokeio3d
do k=1,grd_a%nsig
lnames(1,ilev)=k
names(1,ilev)=trim(fv3lam_io_tracersmokevars3d_nouv(i))
ilev=ilev+1
enddo
enddo
call general_sub2grid_create_info(grd_fv3lam_tracersmoke_ionouv,inner_vars,grd_a%nlat,&
grd_a%nlon,grd_a%nsig,numfields,regional,names=names,lnames=lnames)

endif


inner_vars=2
numfields=grd_a%nsig
allocate(uvlnames(inner_vars,numfields),uvnames(inner_vars,numfields))
Expand Down Expand Up @@ -1254,6 +1326,12 @@ subroutine read_fv3_netcdf_guess(fv3filenamegin)
if (ier/=0) call die(trim(myname),'cannot get pointers for fv3chem-fields, ier =',ier)
end if

if (laeroana_fv3smoke) then
call GSI_BundleGetPointer ( GSI_ChemGuess_Bundle(it),'smoke',ges_smoke,istatus );ier=ier+istatus
call GSI_BundleGetPointer ( GSI_ChemGuess_Bundle(it),'dust', ges_dust,istatus );ier=ier+istatus
call GSI_BundleGetPointer ( GSI_ChemGuess_Bundle(it),'pm2_5',ges_pm2_5,istatus );ier=ier+istatus
end if

if( fv3sar_bg_opt == 0) then
call gsi_fv3ncdf_readuv(grd_fv3lam_uv,ges_u,ges_v,fv3filenamegin(it))
else
Expand All @@ -1269,6 +1347,10 @@ subroutine read_fv3_netcdf_guess(fv3filenamegin)
call gsi_fv3ncdf_read(grd_fv3lam_tracerchem_ionouv,gsibundle_fv3lam_tracerchem_nouv &
& ,fv3filenamegin(it)%tracers,fv3filenamegin(it))
endif
if (laeroana_fv3smoke) then
call gsi_fv3ncdf_read(grd_fv3lam_tracersmoke_ionouv,gsibundle_fv3lam_tracersmoke_nouv &
& ,fv3filenamegin(it)%tracers,fv3filenamegin(it))
endif
else
call gsi_fv3ncdf_read_v1(grd_fv3lam_dynvar_ionouv,gsibundle_fv3lam_dynvar_nouv &
& ,fv3filenamegin(it)%dynvars,fv3filenamegin(it))
Expand All @@ -1278,6 +1360,10 @@ subroutine read_fv3_netcdf_guess(fv3filenamegin)
call gsi_fv3ncdf_read_v1(grd_fv3lam_tracerchem_ionouv,gsibundle_fv3lam_tracerchem_nouv &
& ,fv3filenamegin(it)%tracers,fv3filenamegin(it))
endif
if (laeroana_fv3smoke) then
call gsi_fv3ncdf_read_v1(grd_fv3lam_tracersmoke_ionouv,gsibundle_fv3lam_tracersmoke_nouv &
& ,fv3filenamegin(it)%tracers,fv3filenamegin(it))
endif
endif

if (laeroana_fv3cmaq) then
Expand Down Expand Up @@ -1324,12 +1410,35 @@ subroutine read_fv3_netcdf_guess(fv3filenamegin)
enddo
end if ! laeroana_fv3cmaq

if (laeroana_fv3smoke) then
ier=0
call GSI_BundleGetPointer ( gsibundle_fv3lam_tracersmoke_nouv,'smoke',ges_smoke,istatus );ier=ier+istatus
call GSI_BundleGetPointer ( gsibundle_fv3lam_tracersmoke_nouv,'dust',ges_dust,istatus );ier=ier+istatus
call GSI_BundleGetPointer ( gsibundle_fv3lam_tracersmoke_nouv,'pm2_5',ges_pm2_5,istatus );ier=ier+istatus
if (ier/=0) call die(trim(myname),'cannot get pointers for fv3 chem-fields, ier =',ier)
! Calculate pm2_5
do k=1,nsig
do j=1,lon2
do i=1,lat2
ges_pm2_5(i,j,k)=ges_smoke(i,j,k) + ges_dust(i,j,k)
enddo
enddo
enddo
endif !laeroana_fv3smoke

if( fv3sar_bg_opt == 0) then
call GSI_BundleGetPointer ( gsibundle_fv3lam_dynvar_nouv, 'delp' ,ges_delp ,istatus );ier=ier+istatus
if(istatus==0) ges_delp=ges_delp*0.001_r_kind
endif
call gsi_copy_bundle(gsibundle_fv3lam_dynvar_nouv,GSI_MetGuess_Bundle(it))
call gsi_copy_bundle(gsibundle_fv3lam_tracer_nouv,GSI_MetGuess_Bundle(it))
if (laeroana_fv3cmaq) then
call gsi_copy_bundle(gsibundle_fv3lam_tracerchem_nouv,GSI_ChemGuess_Bundle(it))
endif
if (laeroana_fv3smoke) then
call gsi_copy_bundle(gsibundle_fv3lam_tracersmoke_nouv,GSI_ChemGuess_Bundle(it))
endif

call GSI_BundleGetPointer ( gsibundle_fv3lam_dynvar_nouv, 'tsen' ,ges_tsen_readin ,istatus );ier=ier+istatus
!! tsen2tv !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
do k=1,nsig
Expand Down Expand Up @@ -1866,8 +1975,8 @@ subroutine gsi_fv3ncdf2d_read(fv3filenamegin,it,ges_z,ges_t2m,ges_q2m)
end do
end do

deallocate (dim_id,sfc,sfc1,dim)
deallocate (sfc_fulldomain)
if(allocated(sfc1) .and. allocated(sfc))deallocate (dim_id,sfc,sfc1,dim)
Comment thread
CoryMartin-NOAA marked this conversation as resolved.
if(allocated(sfc_fulldomain)) deallocate (sfc_fulldomain)
endif ! mype


Expand Down Expand Up @@ -2825,6 +2934,10 @@ subroutine wrfv3_netcdf(fv3filenamegin)
if (laeroana_fv3cmaq) then
call gsi_copy_bundle(GSI_ChemGuess_Bundle(it),gsibundle_fv3lam_tracerchem_nouv)
end if
if (laeroana_fv3smoke) then
call gsi_copy_bundle(GSI_ChemGuess_Bundle(it),gsibundle_fv3lam_tracersmoke_nouv)
end if

call gsi_bundleputvar (gsibundle_fv3lam_dynvar_nouv,'tsen',ges_tsen(:,:,:,it),istatus)

if( fv3sar_bg_opt == 0) then
Expand Down Expand Up @@ -2871,6 +2984,10 @@ subroutine wrfv3_netcdf(fv3filenamegin)
call gsi_fv3ncdf_write(grd_fv3lam_tracerchem_ionouv,gsibundle_fv3lam_tracerchem_nouv, &
add_saved,fv3filenamegin%tracers,fv3filenamegin)
endif
if (laeroana_fv3smoke) then
call gsi_fv3ncdf_write(grd_fv3lam_tracersmoke_ionouv,gsibundle_fv3lam_tracersmoke_nouv,&
add_saved,fv3filenamegin%tracers,fv3filenamegin)
endif

else
call gsi_fv3ncdf_write_v1(grd_fv3lam_dynvar_ionouv,gsibundle_fv3lam_dynvar_nouv,&
Expand All @@ -2882,6 +2999,11 @@ subroutine wrfv3_netcdf(fv3filenamegin)
call gsi_fv3ncdf_write_v1(grd_fv3lam_tracerchem_ionouv,gsibundle_fv3lam_tracerchem_nouv,&
add_saved,fv3filenamegin%tracers,fv3filenamegin)
endif
if (laeroana_fv3smoke) then
call gsi_fv3ncdf_write_v1(grd_fv3lam_tracersmoke_ionouv,gsibundle_fv3lam_tracersmoke_nouv,&
add_saved,fv3filenamegin%tracers,fv3filenamegin)
endif

endif

if(i_use_2mq4b > 0 .and. i_use_2mt4b > 0 ) then
Expand Down
6 changes: 3 additions & 3 deletions src/gsi/gsimod.F90
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -183,7 +183,7 @@ module gsimod
oblon_chem,obpres_chem,diag_incr,elev_tolerance,tunable_error,&
in_fname,out_fname,incr_fname, &
laeroana_gocart, l_aoderr_table, aod_qa_limit, luse_deepblue, lread_ext_aerosol, &
laeroana_fv3cmaq,crtm_aerosol_model,crtm_aerosolcoeff_format,crtm_aerosolcoeff_file, &
laeroana_fv3cmaq,laeroana_fv3smoke,pm2_5_innov_threshold,crtm_aerosol_model,crtm_aerosolcoeff_format,crtm_aerosolcoeff_file, &
icvt_cmaq_fv3, raod_radius_mean_scale,raod_radius_std_scale

use chemmod, only : wrf_pm2_5,aero_ratios
Expand Down Expand Up @@ -1568,9 +1568,9 @@ module gsimod
oneob_type_chem,oblat_chem,oblon_chem,obpres_chem,&
diag_incr,elev_tolerance,tunable_error,&
in_fname,out_fname,incr_fname,&
laeroana_gocart, laeroana_fv3cmaq,l_aoderr_table, aod_qa_limit, &
laeroana_gocart, laeroana_fv3cmaq,laeroana_fv3smoke,l_aoderr_table, aod_qa_limit, &
crtm_aerosol_model,crtm_aerosolcoeff_format,crtm_aerosolcoeff_file, &
icvt_cmaq_fv3, &
icvt_cmaq_fv3,pm2_5_innov_threshold, &
raod_radius_mean_scale,raod_radius_std_scale, luse_deepblue,&
aero_ratios,wrf_pm2_5, lread_ext_aerosol

Expand Down
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