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Weekly update of JEDI hashes (20251103) #1967

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Merged
RussTreadon-NOAA merged 6 commits into from
Nov 3, 2025
Merged

Weekly update of JEDI hashes (20251103) #1967

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db6e3ca
generalize GDAS_CI_ROOT path in ci/hera.sh
RussTreadon-NOAA Oct 27, 2025
ccab7a5
Merge branch 'develop' into feature/stable-nightly
RussTreadon-NOAA Oct 30, 2025
1309c36
update cubed_sphere_grid filenames for test_gdasapp_atm_jjob init jobs
RussTreadon-NOAA Oct 30, 2025
cc9ed90
Update to new stable build on 20251031
RussTreadon-NOAA Oct 31, 2025
1ab24a1
Merge branch 'develop' into feature/stable-nightly
RussTreadon-NOAA Nov 1, 2025
a46810f
Update to new stable build on 20251101
RussTreadon-NOAA Nov 1, 2025
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2 changes: 1 addition & 1 deletion ci/hera.sh
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
export GDAS_CI_ROOT=/scratch3/NCEPDEV/da/Russ.Treadon/CI/GDASApp
export GDAS_CI_ROOT=/scratch3/NCEPDEV/da/$USER/CI/GDASApp
export GDAS_CI_HOST='hera'
export GDAS_MODULE_USE=$GDAS_CI_ROOT/repo/modulefiles
export SLURM_ACCOUNT=da-cpu
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2 changes: 1 addition & 1 deletion sorc/fv3-jedi
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Submodule fv3-jedi updated 2 files
+27 −20 CMakeLists.txt
+0 −6 src/CMakeLists.txt
2 changes: 1 addition & 1 deletion sorc/ioda
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Submodule ioda updated 43 files
+2 −0 cmake/compiler_flags_NAG_Fortran.cmake
+3 −0 cmake/ioda_compiler_flags.cmake
+15 −4 src/CMakeLists.txt
+314 −430 src/ObsSpace.cc
+38 −148 src/ObsSpace.h
+92 −0 src/containers/FrameMetadata.cpp
+102 −0 src/containers/FrameMetadata.h
+1 −0 src/containers/IFrame.h
+5 −1 src/core/IodaUtils.cc
+55 −0 src/core/ObsDimInfo.cc
+64 −0 src/core/ObsDimInfo.h
+42 −0 src/core/ObsSourceStats.h
+1 −2 src/engines/Examples/Basic/00-Strings.f90
+2 −3 src/engines/Examples/Basic/00-VecStrings.f90
+1 −4 src/engines/Examples/Basic/01-GroupsAndObsSpaces.f90
+2 −3 src/engines/Examples/Basic/02-Attributes.f90
+5 −1 src/engines/Examples/Basic/CMakeLists.txt
+1 −1 src/engines/ioda/fortran/CMakeLists.txt
+1 −2 src/engines/ioda/fortran/cxx_vector_string_mod.f90
+0 −5 src/engines/ioda/fortran/f_c_string_mod.f90
+0 −2 src/engines/ioda/fortran/ioda_engines_mod.f90
+0 −1 src/engines/ioda/fortran/ioda_has_attributes_mod.f90
+0 −1 src/engines/ioda/fortran/ioda_has_variables_mod.f90
+3 −3 src/obsdatavector_int_mod.f90
+0 −1 src/obsspace_mod.F90
+63 −0 src/reader/ObsReader.cpp
+61 −0 src/reader/ObsReader.hpp
+47 −0 src/reader/distribute/distributeObs.cpp
+42 −0 src/reader/distribute/distributeObs.hpp
+39 −7 src/reader/filter/filterObs.cpp
+17 −3 src/reader/filter/filterObs.hpp
+146 −0 src/reader/load/loadObs.cpp
+44 −0 src/reader/load/loadObs.hpp
+0 −51 src/reader/load/loadObsContainerFromNetcdf.hpp
+84 −57 src/reader/load/loadObsFromNetcdf.cpp
+39 −0 src/reader/load/loadObsFromNetcdf.hpp
+11 −11 test/CMakeLists.txt
+50 −3 test/ioda/ReaderFilter.h
+35 −55 test/ioda/ReaderLoad.h
+2 −2 test/mains/TestReaderLoad.cc
+11 −4 test/testinput/iodatest_obsspace_osdf.yaml
+7 −0 test/testinput/iodatest_reader_filter.yaml
+2 −0 test/testinput/iodatest_reader_load.yaml
2 changes: 1 addition & 1 deletion sorc/iodaconv
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Submodule iodaconv updated 2 files
+1 −0 src/space_weather/CMakeLists.txt
+308 −0 src/space_weather/gnss_los_ground_tec_json2ioda.py
2 changes: 1 addition & 1 deletion sorc/oops
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Submodule oops updated 15 files
+1 −4 qg/model/qg_differential_solver_mod.F90
+1 −1 qg/model/qg_fields_interface.F90
+0 −7 qg/model/qg_fields_mod.F90
+0 −1 qg/model/qg_geom_interface.F90
+0 −1 qg/model/qg_geom_mod.F90
+0 −2 qg/model/qg_gom_interface.F90
+2 −5 qg/model/qg_gom_mod.F90
+0 −1 qg/model/qg_interp_mod.F90
+0 −1 qg/model/qg_model_interface.F90
+0 −1 qg/model/qg_obsdb_interface.F90
+0 −1 qg/model/qg_stream_interface.F90
+0 −1 qg/model/qg_wind_interface.F90
+0 −1 qg/model/qg_wspeed_interface.F90
+1 −1 src/oops/base/obsvariables_mod.F90
+11 −8 src/test/base/ObsErrorCovariance.h
2 changes: 1 addition & 1 deletion sorc/saber
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Submodule saber updated 8 files
+44 −60 src/saber/bifourier/Biperiodization.cc
+5 −7 src/saber/bifourier/Biperiodization.h
+6 −0 src/saber/bifourier/BiperiodizationImpl.cc
+4 −0 src/saber/bifourier/BiperiodizationImpl.h
+11 −1 src/saber/blocks/SaberOuterBlockBase.h
+17 −3 src/saber/blocks/SaberOuterBlockChain.h
+0 −3 test/testref/dirac_biperiodization_1.ref
+0 −3 test/testref/dirac_biperiodization_2.ref
2 changes: 1 addition & 1 deletion sorc/soca
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Submodule soca updated 1 files
+1 −0 src/soca/ModelData/ModelData.h
2 changes: 1 addition & 1 deletion sorc/ufo
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Submodule ufo updated 9 files
+30 −28 src/ufo/operators/crtm/ufo_crtm_utils_mod.F90
+0 −10 src/ufo/operators/groundgnss/ZenithTotalDelayMetOffice/ufo_groundgnss_metoffice_mod.F90
+0 −10 src/ufo/operators/groundgnss/ZenithTotalDelayMetOffice/ufo_groundgnss_metoffice_tlad_mod.F90
+0 −8 src/ufo/operators/groundgnss/ZenithTotalDelayROPP/ufo_groundgnss_ropp_mod.F90
+0 −5 src/ufo/operators/groundgnss/ZenithTotalDelayROPP/ufo_groundgnss_ropp_mod_stub.F90
+3 −3 src/ufo/operators/radarradialvelocity/ufo_radarradialvelocity_mod.F90
+1 −43 src/ufo/operators/radarreflectivity/directZDA/radarZ_module.f90
+2 −2 test/CMakeLists.txt
+1 −1 test/testinput/unit_tests/operators/radialvelocity.yaml
2 changes: 1 addition & 1 deletion sorc/vader
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Submodule vader updated 1 files
+36 −27 src/mo/eval_relative_humidity.cc
2 changes: 1 addition & 1 deletion test/atm/global-workflow/jjob_ens_init.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -95,7 +95,7 @@ for imem in $(seq 1 $NMEM_ENS); do

source=$GDASAPP_TESTDATA/lowres/$dpath/$memchar/model/atmos/history
target=$COMIN_ATMOS_HISTORY_PREV_ENS
flist=("cubed_sphere_grid_atmf006.nc" "cubed_sphere_grid_sfcf006.nc")
flist=("csg_atm.f006.nc" "csg_sfc.f006.nc")
for file in "${flist[@]}"; do
rm -rf $target/enkf${gprefix}.${file}
ln -fs $source/enkf${gprefix}.${file} $target/
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2 changes: 1 addition & 1 deletion test/atm/global-workflow/jjob_ens_init_split.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -98,7 +98,7 @@ for imem in $(seq 1 $NMEM_ENS); do

source=$GDASAPP_TESTDATA/lowres/$dpath/$memchar/model/atmos/history
target=$COMIN_ATMOS_HISTORY_PREV_ENS
flist=("cubed_sphere_grid_atmf006.nc" "cubed_sphere_grid_sfcf006.nc")
flist=("csg_atm.f006.nc" "csg_sfc.f006.nc")
for file in "${flist[@]}"; do
rm -rf $target/enkf${gprefix}.${file}
ln -fs $source/enkf${gprefix}.${file} $target/enkf${gprefix}.${file}
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4 changes: 2 additions & 2 deletions test/atm/global-workflow/jjob_var_init.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -87,7 +87,7 @@ for file in $flist; do
done

# Link atmospheric histories on native cubed-sphere grid
flist=("cubed_sphere_grid_atmf006.nc" "cubed_sphere_grid_sfcf006.nc")
flist=("csg_atm.f006.nc" "csg_sfc.f006.nc")
for file in "${flist[@]}"; do
ln -fs $GDASAPP_TESTDATA/lowres/$dpath/${gprefix}.${file} $COMIN_ATMOS_HISTORY_PREV/${gprefix}.${file}
done
Expand All @@ -108,7 +108,7 @@ for imem in $(seq 1 $NMEM_ENS); do

source=$GDASAPP_TESTDATA/lowres/$dpath/$memchar/model/atmos/history
target=$COMIN_ATMOS_HISTORY_PREV_ENS
flist=("cubed_sphere_grid_atmf006.nc" "cubed_sphere_grid_sfcf006.nc")
flist=("csg_atm.f006.nc" "csg_sfc.f006.nc")
for file in "${flist[@]}"; do
rm -rf $target/enkf${gprefix}.${file}
ln -fs $source/enkf${gprefix}.${file} $target/
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