Move Global Workflow parm/gdas files into GDASApp parm

parm/aero/aero_bmat_jedi_config.yaml.j2

@@ -0,0 +1,19 @@
+aero_interpbkg:
+  rundir: '{{ DATA }}'
+  exe_src: '{{ EXECgfs }}/gdas.x'
+  jedi_args: ['fv3jedi', 'convertstate']
+  mpi_cmd: '{{ APRUN_AEROANLGENB }}'
+  jcb_base_yaml: '{{ PARMgfs }}/gdas/aero/jcb-base.yaml.j2'
+  jcb_algo: aero_convert_background
+aero_diagb:
+  rundir: '{{ DATA }}'
+  exe_src: '{{ EXECgfs }}/gdas_fv3jedi_chem_diagb.x'
+  mpi_cmd: '{{ APRUN_AEROANLGENB }}'
+  jcb_base_yaml: '{{ PARMgfs }}/gdas/aero/jcb-base.yaml.j2'
+  jcb_algo: aero_gen_bmatrix_diagb
+aero_diffusion:
+  rundir: '{{ DATA }}'
+  exe_src: '{{ EXECgfs }}/gdas_fv3jedi_error_covariance_toolbox.x'
+  mpi_cmd: '{{ APRUN_AEROANLGENB }}'
+  jcb_base_yaml: '{{ PARMgfs }}/gdas/aero/jcb-base.yaml.j2'
+  jcb_algo: aero_gen_bmatrix_diffusion

parm/aero/aero_bmat_save.yaml.j2

@@ -0,0 +1,19 @@
+{% set cycle_HH = current_cycle | strftime("%H") %}
+{% set HEAD = RUN + ".t" + cycle_HH + "z." %}
+{% set offset_td = "+6H" | to_timedelta %}
+{% set background_time = current_cycle | add_to_datetime(offset_td) %}
+copy:
+### copy YAMLs used
+{% set yaml_list = ['aero_diagb.yaml', 'aero_diffusion.yaml', 'aero_interpbkg.yaml'] %}
+{% for fname in yaml_list %}
+- ["{{ DATA }}/{{ fname }}", "{{ COMOUT_CHEM_BMAT }}/{{ HEAD }}{{ fname }}"]
+{% endfor %}
+### copy stddev files to ROTDIR
+{% for tile in range(1, ntiles+1) %}
+- ["{{ DATA }}/stddev/{{ background_time | to_fv3time }}.stddev.fv_tracer.res.tile{{ tile }}.nc", "{{ COMOUT_CHEM_BMAT }}/{{ background_time | to_fv3time }}.stddev.fv_tracer.res.tile{{ tile }}.nc"]
+{% endfor %}
+### copy coupler file
+- ["{{ DATA }}/stddev/{{ background_time | to_fv3time }}.stddev.coupler.res", "{{ COMOUT_CHEM_BMAT }}/{{ background_time | to_fv3time }}.stddev.coupler.res"]
+### copy diffusion files
+- ["{{ DATA }}/diffusion/diffusion_hz.nc", "{{ COMOUT_CHEM_BMAT }}/{{ HEAD }}aero_diffusion_hz.nc"]
+- ["{{ DATA }}/diffusion/diffusion_vt.nc", "{{ COMOUT_CHEM_BMAT }}/{{ HEAD }}aero_diffusion_vt.nc"]

parm/aero/aero_bmat_stage.yaml.j2

@@ -0,0 +1,46 @@
+######################################
+# set some variables
+######################################
+{% set offset_td = "+6H" | to_timedelta %}
+{% set background_time = current_cycle | add_to_datetime(offset_td) %}
+{% set ftype_list = ['fv_core.res', 'fv_tracer.res', 'sfc_data'] %}
+######################################
+# create working directories
+######################################
+mkdir:
+- "{{ DATA }}/bkg"
+- "{{ DATA }}/stddev"
+- "{{ DATA }}/clm_stddev"
+- "{{ DATA }}/diffusion"
+- "{{ DATA }}/rescale"
+copy:
+######################################
+# copy deterministic background files
+######################################
+# define variables
+# Declare a dict of search and replace terms to run on each template
+{% set tmpl_dict = {'${ROTDIR}':ROTDIR,
+                    '${RUN}':RUN,
+                    '${YMD}':current_cycle | to_YMD,
+                    '${HH}':current_cycle | strftime("%H"),
+                    '${MEMDIR}':""} %}
+
+- ["{{ COM_ATMOS_RESTART_TMPL | replace_tmpl(tmpl_dict) }}/{{ background_time | to_fv3time }}.coupler.res", "{{ DATA }}/bkg/{{ background_time | to_fv3time }}.coupler.res"]
+{% for ftype in ftype_list %}
+  {% for tile in range(1, ntiles+1) %}
+- ["{{ COM_ATMOS_RESTART_TMPL | replace_tmpl(tmpl_dict) }}/{{ background_time | to_fv3time }}.{{ ftype }}.tile{{ tile }}.nc", "{{ DATA }}/bkg/{{ background_time | to_fv3time }}.{{ ftype }}.tile{{ tile }}.nc"]
+- ["{{ FIXorog }}/{{ CASE }}/{{ CASE }}.mx{{ OCNRES }}_oro_data.tile{{ tile }}.nc", "{{ DATA }}/bkg/{{ CASE }}.mx{{ OCNRES }}_oro_data.tile{{ tile }}.nc" ]
+  {% endfor %}
+{% endfor %}
+######################################
+# copy climatological stddev files
+######################################
+{% for tile in range(1, ntiles+1) %}
+- ["{{ BERROR_DATA_DIR }}/stddev.fv_tracer.res.tile{{ tile }}.nc", "{{ DATA }}/clm_stddev/stddev.fv_tracer.res.tile{{ tile }}.nc"]
+{% endfor %}
+######################################
+# copy stddev rescaling factor files
+######################################
+{% for tile in range(1, ntiles+1) %}
+- ["{{ BERROR_DATA_DIR }}/rescale.fv_tracer.res.tile{{ tile }}.nc", "{{ DATA }}/rescale/rescale.fv_tracer.res.tile{{ tile }}.nc"]
+{% endfor %}

parm/aero/aero_crtm_coeff.yaml.j2

@@ -0,0 +1,13 @@
+mkdir:
+- '{{ DATA }}/crtm/'
+copy:
+- ['{{ CRTM_FIX }}/AerosolCoeff.bin', '{{ DATA }}/crtm/']
+- ['{{ CRTM_FIX }}/CloudCoeff.bin', '{{ DATA }}/crtm/']
+- ['{{ CRTM_FIX }}/v.viirs-m_npp.SpcCoeff.bin', '{{ DATA }}/crtm/']
+- ['{{ CRTM_FIX }}/v.viirs-m_npp.TauCoeff.bin', '{{ DATA }}/crtm/']
+- ['{{ CRTM_FIX }}/v.viirs-m_j1.SpcCoeff.bin', '{{ DATA }}/crtm/']
+- ['{{ CRTM_FIX }}/v.viirs-m_j1.TauCoeff.bin', '{{ DATA }}/crtm/']
+- ['{{ CRTM_FIX }}/NPOESS.VISice.EmisCoeff.bin', '{{ DATA }}/crtm/']
+- ['{{ CRTM_FIX }}/NPOESS.VISland.EmisCoeff.bin', '{{ DATA }}/crtm/']
+- ['{{ CRTM_FIX }}/NPOESS.VISsnow.EmisCoeff.bin', '{{ DATA }}/crtm/']
+- ['{{ CRTM_FIX }}/NPOESS.VISwater.EmisCoeff.bin', '{{ DATA }}/crtm/']

parm/aero/aero_det_inc_vars.yaml

@@ -0,0 +1 @@
+incvars: ['dust1', 'dust2', 'dust3', 'dust4', 'dust5', 'seas1', 'seas2', 'seas3', 'seas4', 'so4', 'oc1', 'oc2', 'bc1', 'bc2']

parm/aero/aero_det_jedi_config.yaml.j2

@@ -0,0 +1,7 @@
+aeroanlvar:
+  rundir: '{{ DATA }}'
+  exe_src: '{{ EXECgfs }}/gdas.x'
+  mpi_cmd: '{{ APRUN_AEROANL }}'
+  jedi_args: ['fv3jedi', 'variational']
+  jcb_base_yaml: '{{ PARMgfs }}/gdas/aero/jcb-base.yaml.j2'
+  jcb_algo_yaml: '{{ JCB_ALGO_YAML_VAR }}'

parm/aero/aero_det_save.yaml.j2

@@ -0,0 +1,25 @@
+######################################
+# set some variables
+######################################
+{% if DOIAU == True %}
+    {% set bkgtime = AERO_WINDOW_BEGIN %}
+{% else %}
+    {% set bkgtime = current_cycle %}
+{% endif %}
+######################################
+mkdir:
+- "{{ COMOUT_CHEM_ANALYSIS }}"
+- "{{ COMOUT_ATMOS_RESTART }}"
+- "{{ COMOUT_CONF }}"
+copy:
+## copy variational YAML to ROTDIR
+- ["{{ DATA }}/aeroanlvar.yaml", "{{ COMOUT_CONF }}/{{ APREFIX }}aerovar.yaml"]
+## copy increments
+{% for tile in range(1,ntiles+1) %}
+- ["{{ DATA }}/anl/aeroinc.{{ current_cycle | to_fv3time }}.fv_tracer.res.tile{{ tile }}.nc", "{{ COMOUT_CHEM_ANALYSIS }}/aeroinc.{{ current_cycle | to_fv3time }}.fv_tracer.res.tile{{ tile }}.nc"]
+{% endfor %}
+- ["{{ DATA }}/anl/aeroinc_gauss.{{ current_cycle | to_isotime }}.gaussian.modelLevels.nc", "{{ COMOUT_CHEM_ANALYSIS }}/{{ APREFIX }}aeroinc.nc"]
+## copy analysis
+{% for tile in range(1,ntiles+1) %}
+- ["{{ DATA }}/anl/{{ bkgtime | to_fv3time }}.fv_tracer.res.tile{{ tile }}.nc", "{{ COMOUT_ATMOS_RESTART }}/{{ bkgtime | to_fv3time }}.aeroanl_fv_tracer.res.tile{{ tile }}.nc"]
+{% endfor %}

parm/aero/aero_det_stage.yaml.j2

@@ -0,0 +1,50 @@
+######################################
+# set some variables
+######################################
+{% set bkg_times = [] %}
+{% for fh in aero_bkg_fhr %}
+  {% set offset = fh | string + "H" %}
+  {% set fcst_timedelta = offset | to_timedelta %}
+  {% set fcst_time = AERO_WINDOW_BEGIN | add_to_datetime(fcst_timedelta) %}
+  {% do bkg_times.append(fcst_time) %}
+{% endfor %}
+{% if DOIAU == True %}
+  {% set anl_time = AERO_WINDOW_BEGIN %}
+{% else %}
+  {% set anl_time = current_cycle %}
+{% endif %}
+{% set fvfiles = ['fv_core.res.', 'fv_tracer.res.', 'sfc_data.', 'fv_srf_wnd.res.'] %}
+######################################
+mkdir:
+- "{{ DATA }}/anl"
+- "{{ DATA }}/diags"
+- "{{ DATA }}/berror"
+- "{{ DATA }}/bkg"
+copy:
+######################################
+## copy backgrounds
+{% for bkgtime in bkg_times %}
+- ["{{ COMIN_ATMOS_RESTART_PREV }}/{{ bkgtime | to_fv3time }}.coupler.res", "{{ DATA }}/bkg/{{ bkgtime | to_fv3time }}.coupler.res"]
+  {% for fvfile in fvfiles %}
+    {% for tile in range(1,ntiles+1) %}
+- ["{{ COMIN_ATMOS_RESTART_PREV }}/{{ bkgtime | to_fv3time }}.{{ fvfile }}tile{{ tile }}.nc", "{{ DATA }}/bkg/{{ bkgtime | to_fv3time }}.{{ fvfile }}tile{{ tile }}.nc"]
+    {% endfor %}
+  {% endfor %}
+{% endfor %}
+######################################
+## copy backgrounds again for fv_tracer to create analysis files later
+{% for tile in range(1,ntiles+1) %}
+- ["{{ COMIN_ATMOS_RESTART_PREV }}/{{ anl_time | to_fv3time }}.fv_tracer.res.tile{{ tile }}.nc", "{{ DATA }}/anl/{{ anl_time | to_fv3time }}.fv_tracer.res.tile{{ tile }}.nc"]
+{% endfor %}
+
+######################################
+## copy berror files from COMIN_CHEM_BMAT_PREV
+## stddev files
+{% for tile in range(1, ntiles+1) %}
+- ["{{ COMIN_CHEM_BMAT_PREV }}/{{ current_cycle | to_fv3time }}.stddev.fv_tracer.res.tile{{ tile }}.nc", "{{ DATA }}/berror/{{ current_cycle | to_fv3time }}.stddev.fv_tracer.res.tile{{ tile }}.nc"]
+{% endfor %}
+### copy coupler file
+- ["{{ COMIN_CHEM_BMAT_PREV }}/{{ current_cycle | to_fv3time }}.stddev.coupler.res", "{{ DATA }}/berror/{{ current_cycle | to_fv3time }}.stddev.coupler.res"]
+### copy diffusion files
+- ["{{ COMIN_CHEM_BMAT_PREV }}/{{ GPREFIX }}aero_diffusion_hz.nc", "{{ DATA }}/berror/diffusion_hz.nc"]
+- ["{{ COMIN_CHEM_BMAT_PREV }}/{{ GPREFIX }}aero_diffusion_vt.nc", "{{ DATA }}/berror/diffusion_vt.nc"]

parm/aero/aero_jedi_fix.yaml.j2

@@ -0,0 +1,6 @@
+mkdir:
+- '{{ DATA }}/fv3jedi'
+copy:
+- ['{{ FIXgfs }}/gdas/fv3jedi/fv3files/akbk{{ npz }}.nc4', '{{ DATA }}/fv3jedi/akbk.nc4']
+- ['{{ FIXgfs }}/gdas/fv3jedi/fv3files/fmsmpp.nml', '{{ DATA }}/fv3jedi/fmsmpp.nml']
+- ['{{ FIXgfs }}/gdas/fv3jedi/fv3files/field_table_gfdl', '{{ DATA }}/fv3jedi/field_table']

parm/aero/aero_stage_crtm_coeff.yaml.j2

@@ -0,0 +1,13 @@
+mkdir:
+- '{{ DATA }}/crtm/'
+copy:
+- ['{{ CRTM_FIX }}/AerosolCoeff.bin', '{{ DATA }}/crtm/']
+- ['{{ CRTM_FIX }}/CloudCoeff.bin', '{{ DATA }}/crtm/']
+- ['{{ CRTM_FIX }}/v.viirs-m_npp.SpcCoeff.bin', '{{ DATA }}/crtm/']
+- ['{{ CRTM_FIX }}/v.viirs-m_npp.TauCoeff.bin', '{{ DATA }}/crtm/']
+- ['{{ CRTM_FIX }}/v.viirs-m_j1.SpcCoeff.bin', '{{ DATA }}/crtm/']
+- ['{{ CRTM_FIX }}/v.viirs-m_j1.TauCoeff.bin', '{{ DATA }}/crtm/']
+- ['{{ CRTM_FIX }}/NPOESS.VISice.EmisCoeff.bin', '{{ DATA }}/crtm/']
+- ['{{ CRTM_FIX }}/NPOESS.VISland.EmisCoeff.bin', '{{ DATA }}/crtm/']
+- ['{{ CRTM_FIX }}/NPOESS.VISsnow.EmisCoeff.bin', '{{ DATA }}/crtm/']
+- ['{{ CRTM_FIX }}/NPOESS.VISwater.EmisCoeff.bin', '{{ DATA }}/crtm/']

parm/aero/aero_stage_jedi_fix.yaml.j2

@@ -0,0 +1,6 @@
+mkdir:
+- '{{ DATA }}/fv3jedi'
+copy:
+- ['{{ FIXgfs }}/gdas/fv3jedi/fv3files/akbk{{ npz }}.nc4', '{{ DATA }}/fv3jedi/akbk.nc4']
+- ['{{ FIXgfs }}/gdas/fv3jedi/fv3files/fmsmpp.nml', '{{ DATA }}/fv3jedi/fmsmpp.nml']
+- ['{{ FIXgfs }}/gdas/fv3jedi/fv3files/field_table_gfdl', '{{ DATA }}/fv3jedi/field_table']

parm/aero/jcb-base.yaml.j2

@@ -85,7 +85,7 @@ aero_diagb_smooth_vert_iter: {{ aero_diagb_smooth_vert_iter | default(0) }}
 aero_diffusion_iter: {{ aero_diffusion_iter | default(0) }}
 aero_diffusion_horiz_len: {{ aero_diffusion_horiz_len  | default(1.0, true)}}
 aero_diffusion_fixed_val: {{ aero_diffusion_fixed_val  | default(1.0, true)}}
-aero_rescaling_factor_file: {{ AERO_BMATRIX_RESCALE_TMPL }}
+aero_rescaling_factor_file: {{ AERO_BMATRIX_RESCALE_YAML }}
 
 # Analysis
 aero_analysis_path: ./anl

parm/analcalc/analcalc_jedi_config.yaml.j2

@@ -0,0 +1,25 @@
+atm_addincrement:
+  rundir: '{{ DATA }}'
+  exe_src: '{{ EXECgfs }}/gdas.x'
+  jedi_args: ['fv3jedi', 'addincrement']
+  mpi_cmd: '{{ APRUN_ANALCALC_FV3JEDI }}'
+  jcb_base_yaml: '{{ PARMgfs }}/gdas/atm/jcb-base.yaml.j2'
+  jcb_algo: atm_addincrement
+{% if DO_AERO_ANL %}
+aero_addincrement:
+  rundir: '{{ DATA }}'
+  exe_src: '{{ EXECgfs }}/gdas.x'
+  jedi_args: ['fv3jedi', 'addincrement']
+  mpi_cmd: '{{ APRUN_ANALCALC_FV3JEDI }}'
+  jcb_base_yaml: '{{ PARMgfs }}/gdas/aero/jcb-base.yaml.j2'
+  jcb_algo: aero_addincrement
+{% endif %}
+{% if DO_JEDISNOWDA %}
+snow_addincrement:
+  rundir: '{{ DATA }}'
+  exe_src: '{{ EXECgfs }}/gdas.x'
+  jedi_args: ['fv3jedi', 'addincrement']
+  mpi_cmd: '{{ APRUN_ANALCALC_FV3JEDI }}'
+  jcb_base_yaml: '{{ PARMgfs }}/gdas/snow/jcb-base.yaml.j2'
+  jcb_algo: snow_addincrement
+{% endif %}

parm/analcalc/analcalc_stage.yaml.j2

@@ -0,0 +1,14 @@
+copy:
+- ["{{ COMIN_ATMOS_HISTORY_PREV }}/{{ GPREFIX }}atmf006.nc", "{{ DATA }}"]
+- ["{{ COMIN_ATMOS_HISTORY_PREV }}/{{ GPREFIX }}sfcf006.nc", "{{ DATA }}"]
+- ["{{ COMIN_ATMOS_HISTORY_PREV }}/{{ GPREFIX }}cubed_sphere_grid_atmf006.nc", "{{ DATA }}"]
+- ["{{ COMIN_ATMOS_HISTORY_PREV }}/{{ GPREFIX }}cubed_sphere_grid_sfcf006.nc", "{{ DATA }}"]
+{% for itile in range(6) %}
+- ["{{ COMIN_ATMOS_ANALYSIS }}/{{ APREFIX }}cubed_sphere_grid_atminc.tile{{ itile+1 }}.nc", "{{ DATA }}"]
+{% if DO_AERO_ANL %}
+- ["{{ COMIN_AERO_ANALYSIS }}/{{ APREFIX }}aeroinc.{{ current_cycle | to_fv3time }}.fv_tracer.res.tile{{ itile+1 }}.nc", "{{ DATA }}"]
+{% endif %}
+{% if DO_JEDISNOWDA %}
+- ["{{ COMIN_SNOW_ANALYSIS }}/{{ APREFIX }}snowinc.{{ current_cycle | to_fv3time }}.sfc_data.tile{{ itile+1 }}.nc", "{{ DATA }}"]
+{% endif %}
+{% endfor %}

parm/anlstat/anlstat_base_config.yaml.j2

@@ -0,0 +1,35 @@
+aero:
+  stat_file_path: '{{ COMIN_AERO_ANALYSIS }}'
+  stat_file_name: 'aerostat.tgz'
+  obs spaces:
+  - name: viirs_npp
+    input file: "diag_viirs_npp_aod_{{ current_cycle | to_YMDH }}.nc"
+    output file: "viirs_npp_{{ current_cycle | to_YMDH }}_output_aod.nc"
+  - name: viirs_n20
+    input file: "diag_viirs_n20_aod_{{ current_cycle | to_YMDH }}.nc"
+    output file: "viirs_n20_{{ current_cycle | to_YMDH }}_output_aod.nc"
+
+atmos:
+  stat_file_path: '{{ COMIN_ATMOS_ANALYSIS }}'
+  stat_file_name: 'atmstat'
+  obs spaces:
+  - name: conventional_ps
+    input file: "diag_conventional_ps_{{ current_cycle | to_YMDH }}.nc"
+    output file: "conventional_ps_{{ current_cycle | to_YMDH }}_output_atmos.nc"
+
+snow:
+  stat_file_path: '{{ COMIN_SNOW_ANALYSIS }}'
+  stat_file_name: 'snowstat.tgz'
+  obs spaces:
+  - name: ims_snow
+    input file: "diag_ims_snow_{{ current_cycle | to_YMDH }}.nc"
+    output file: "ims_snow_{{ current_cycle | to_YMDH }}_output_snow.nc"
+  - name: sfcsno
+    input file: "diag_sfcsno_{{ current_cycle | to_YMDH }}.nc"
+    output file: "sfcsno_{{ current_cycle | to_YMDH }}_output_snow.nc"
+  - name: snocvr
+    input file: "diag_snocvr_{{ current_cycle | to_YMDH }}.nc"
+    output file: "snocvr_{{ current_cycle | to_YMDH }}_output_snow.nc"
+  - name: madis_snow
+    input file: "diag_madis_snow_{{ current_cycle | to_YMDH }}.nc"
+    output file: "madis_snow_{{ current_cycle | to_YMDH }}_output_snow.nc"

parm/anlstat/anlstat_jedi_config.yaml.j2

@@ -0,0 +1,21 @@
+aero:
+  rundir: '{{ DATA }}'
+  exe_src: '{{ EXECgfs }}/gdas_ioda_diag-stats.x'
+  mpi_cmd: '{{ APRUN_ANLSTAT }}'
+  # jedi_args: None
+  jcb_base_yaml: '{{ PARMgfs }}/gdas/anlstat/aero/jcb-base.yaml.j2'
+  jcb_algo: 'anlstat'
+atmos:
+  rundir: '{{ DATA }}'
+  exe_src: '{{ EXECgfs }}/gdas_ioda_diag-stats.x'
+  mpi_cmd: '{{ APRUN_ANLSTAT }}'
+  # jedi_args: None
+  jcb_base_yaml: '{{ PARMgfs }}/gdas/anlstat/atmos/jcb-base.yaml.j2'
+  jcb_algo: 'anlstat'
+snow:
+  rundir: '{{ DATA }}'
+  exe_src: '{{ EXECgfs }}/gdas_ioda_diag-stats.x'
+  mpi_cmd: '{{ APRUN_ANLSTAT }}'
+  # jedi_args: None
+  jcb_base_yaml: '{{ PARMgfs }}/gdas/anlstat/snow/jcb-base.yaml.j2'
+  jcb_algo: 'anlstat'

parm/atm/atm_det_jedi_config.yaml.j2

@@ -0,0 +1,13 @@
+atmanlvar:
+  rundir: '{{ DATA }}'
+  exe_src: '{{ EXECgfs }}/gdas.x'
+  mpi_cmd: '{{ APRUN_ATMANLVAR }}'
+  jedi_args: ['fv3jedi', 'variational']
+  jcb_base_yaml: '{{ PARMgfs }}/gdas/atm/jcb-base.yaml.j2'
+  jcb_algo_yaml: '{{ JCB_ALGO_YAML_VAR }}'
+atmanlfv3inc:
+  rundir: '{{ DATA }}'
+  exe_src: '{{ EXECgfs }}/gdas_fv3jedi_fv3inc.x'
+  mpi_cmd: '{{ APRUN_ATMANLFV3INC }}'
+  jcb_base_yaml: '{{ PARMgfs }}/gdas/atm/jcb-base.yaml.j2'
+  jcb_algo_yaml: '{{ JCB_ALGO_YAML_FV3INC }}'

parm/atm/atm_det_stage_berror_gsibec.yaml.j2

@@ -0,0 +1,8 @@
+{% set fname_list = ['gfs_gsi_global.nml', 'gsi-coeffs-gfs-global.nc4'] %}
+
+mkdir:
+- '{{ DATA }}/berror'
+copy:
+{% for fname in fname_list %}
+- ['{{ HOMEgfs }}/fix/gdas/gsibec/{{ CASE_ANL }}/{{ fname }}', '{{ DATA }}/berror']
+{% endfor %}

parm/atm/atm_det_stage_bkg.yaml.j2

@@ -0,0 +1,5 @@
+mkdir:
+- '{{ DATA }}/bkg'
+copy:
+- ['{{ COMIN_ATMOS_HISTORY_PREV }}/{{ GPREFIX }}cubed_sphere_grid_atmf006.nc', '{{ DATA }}/bkg/']
+- ['{{ COMIN_ATMOS_HISTORY_PREV }}/{{ GPREFIX }}cubed_sphere_grid_sfcf006.nc', '{{ DATA }}/bkg/']

parm/atm/atm_det_stage_fv3ens.yaml.j2

@@ -0,0 +1,15 @@
+mkdir:
+{% for imem in range(1,NMEM_ENS+1) %}
+- '{{ DATA }}/ens/{{ 'mem%03d' | format(imem) }}'
+{% endfor %}
+copy:
+{% for imem in range(1,NMEM_ENS+1) %}
+   {% set memchar = 'mem%03d' | format(imem) %}
+   {% set tmpl_dict = ({ '${ROTDIR}': ROTDIR,
+                         '${RUN}': 'enkfgdas',
+                         '${YMD}': previous_cycle | to_YMD,
+                         '${HH}': previous_cycle | strftime('%H'),
+                         '${MEMDIR}': memchar }) %}
+- ['{{ COM_ATMOS_HISTORY_TMPL | replace_tmpl(tmpl_dict) }}/{{ GPREFIX_ENS }}cubed_sphere_grid_atmf006.nc', '{{ DATA }}/ens/{{ memchar }}/']
+- ['{{ COM_ATMOS_HISTORY_TMPL | replace_tmpl(tmpl_dict) }}/{{ GPREFIX_ENS }}cubed_sphere_grid_sfcf006.nc', '{{ DATA }}/ens/{{ memchar }}/']
+{% endfor %}

parm/atm/atm_ecen_jedi_config.yaml.j2

@@ -0,0 +1,12 @@
+correction_increment:
+  rundir: '{{ DATA }}'
+  exe_src: '{{ EXECgfs }}/gdas_fv3jedi_correction_increment.x'
+  mpi_cmd: '{{ APRUN_CORRECTION_INCREMENT }}'
+  jcb_base_yaml: '{{ PARMgfs }}/gdas/atm/jcb-base.yaml.j2'
+  jcb_algo: fv3jedi_correction_increment
+ensemble_recenter:
+  rundir: '{{ DATA }}'
+  exe_src: '{{ EXECgfs }}/gdas_fv3jedi_ensemble_add_increment.x'
+  mpi_cmd: '{{ APRUN_ENSEMBLE_RECENTER }}'
+  jcb_base_yaml: '{{ PARMgfs }}/gdas/atm/jcb-base.yaml.j2'
+  jcb_algo: fv3jedi_ensemble_recenter