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Merged
DavidNew-NOAA merged 11 commits into from
Jul 16, 2025
Merged

Update select sorc hashes #1791

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b201291
Update to new stable build on 20250708
RussTreadon-NOAA Jul 8, 2025
593dfb1
Update to new stable build on 20250709
RussTreadon-NOAA Jul 9, 2025
3fd2918
Merge branch 'develop' into feature/stable-nightly
RussTreadon-NOAA Jul 10, 2025
abbf590
Update to new stable build on 20250710
RussTreadon-NOAA Jul 10, 2025
5105d0e
Update to new stable build on 20250711
RussTreadon-NOAA Jul 11, 2025
8a26b23
update bufr-query hash (#1790)
RussTreadon-NOAA Jul 11, 2025
d7c3747
Update to new stable build on 20250712
RussTreadon-NOAA Jul 12, 2025
0b798ef
Merge branch 'develop' into feature/stable-nightly
RussTreadon-NOAA Jul 14, 2025
616d8e6
Update to new stable build on 20250715
RussTreadon-NOAA Jul 15, 2025
af995ca
Merge branch 'develop' into feature/stable-nightly
RussTreadon-NOAA Jul 15, 2025
8fabc37
Merge branch 'develop' into feature/stable-nightly
RussTreadon-NOAA Jul 16, 2025
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2 changes: 1 addition & 1 deletion sorc/bufr-query
Open in desktop
Submodule bufr-query updated 89 files
+3 −3 .readthedocs.yaml
+6 −1 core/include/bufr/DataProvider.h
+8 −0 core/include/bufr/ResultSet.h
+10 −1 core/include/bufr/encoders/netcdf/NetcdfHelper.h
+7 −1 core/src/bufr/BufrReader/BufrParser.cpp
+148 −84 core/src/bufr/BufrReader/Exports/Variables/SensorScanAngleVariable.cpp
+20 −2 core/src/bufr/BufrReader/Exports/Variables/SensorScanAngleVariable.h
+11 −12 core/src/bufr/BufrReader/Query/DataProvider/DataProvider.cpp
+7 −1 core/src/bufr/BufrReader/Query/ResultSet.cpp
+98 −2 core/src/bufr/BufrReader/Query/ResultSetImpl.cpp
+7 −0 core/src/bufr/BufrReader/Query/ResultSetImpl.h
+26 −3 core/src/bufr/DataObjectBuilder.h
+9 −0 core/src/encoders/EncoderBase.cpp
+2 −2 core/src/encoders/netcdf/Encoder.cpp
+1 −0 docs/conf.py
+53 −53 docs/obs_builder.rst
+22 −1 docs/python_api.rst
+1 −0 docs/requirements.txt
+0 −10 docs/uml/BUFR_EncoderClassDiagram.puml
+19 −17 docs/uml/BUFR_ObsBuilder.puml
+83 −98 docs/yaml.rst
+12 −12 python/CMakeLists.txt
+0 −1 python/bufr/encoders/__init__.py
+0 −1 python/bufr/encoders/zarr/__init__.py
+0 −107 python/bufr/encoders/zarr/encoder.py
+3 −0 python/bufr/obs_builder/__init__.py
+35 −0 python/bufr/obs_builder/add_dummy_variable.py
+20 −1 python/bufr/obs_builder/add_main_functions.py
+4 −2 python/bufr/obs_builder/logger.py
+27 −0 python/bufr/obs_builder/map_path.py
+39 −0 python/bufr/obs_builder/nprocs_per_task.py
+81 −42 python/bufr/obs_builder/obs_builder.py
+2 −0 python/bufr/transforms/__init__.py
+37 −0 python/bufr/transforms/geometry.py
+30 −0 python/bufr/transforms/wind.py
+2 −0 python/py_bufr.cpp
+16 −2 python/py_data_container.cpp
+6 −1 python/py_encoder_description.cpp
+36 −0 python/py_helpers.cpp
+2 −1 python/py_mpi.cpp
+1 −0 python/py_mpi.h
+9 −1 test/CMakeLists.txt
+0 −1 test/testinput/bufrtest_adpsfc_cloud_rrfs_prepbufr_mapping.yaml
+0 −1 test/testinput/bufrtest_adpsfc_mapping.yaml
+0 −1 test/testinput/bufrtest_adpsfc_prepbufr_mapping.yaml
+0 −1 test/testinput/bufrtest_adpsfc_snow_mapping.yaml
+0 −1 test/testinput/bufrtest_adpupa_mapping.yaml
+0 −1 test/testinput/bufrtest_adpupa_prepbufr_mapping.yaml
+0 −1 test/testinput/bufrtest_aircar_mapping.yaml
+0 −1 test/testinput/bufrtest_aircft_amdar103_mapping.yaml
+0 −1 test/testinput/bufrtest_aircft_noamdar103_mapping.yaml
+0 −1 test/testinput/bufrtest_aircft_prepbufr_mapping.yaml
+0 −1 test/testinput/bufrtest_amua_n15_mapping.yaml
+0 −1 test/testinput/bufrtest_amua_ta_mapping.yaml
+0 −1 test/testinput/bufrtest_atms_mapping.yaml
+0 −1 test/testinput/bufrtest_dim_labels_mapping.yaml
+0 −1 test/testinput/bufrtest_empty_fields_mapping.yaml
+0 −1 test/testinput/bufrtest_esamua_mapping.yaml
+0 −1 test/testinput/bufrtest_esmhs_mapping.yaml
+0 −1 test/testinput/bufrtest_filter_split_mapping.yaml
+0 −1 test/testinput/bufrtest_filtering_mapping.yaml
+0 −1 test/testinput/bufrtest_hrs_basic_mapping.yaml
+0 −1 test/testinput/bufrtest_lgycld_rrfs_mapping.yaml
+0 −1 test/testinput/bufrtest_long_strs_mapping.yaml
+0 −1 test/testinput/bufrtest_mhs_basic_mapping.yaml
+0 −1 test/testinput/bufrtest_mhs_mapping.yaml
+56 −0 test/testinput/bufrtest_missing_subset_mapping.yaml
+0 −1 test/testinput/bufrtest_mtiasi_mapping.yaml
+19 −12 test/testinput/bufrtest_python_test.py
+0 −1 test/testinput/bufrtest_read_2_dim_blocks_mapping.yaml
+0 −1 test/testinput/bufrtest_rtma_adpsfc_mapping.yaml
+0 −1 test/testinput/bufrtest_rtma_aircft_NC004103_mapping.yaml
+0 −1 test/testinput/bufrtest_rtma_aircft_mapping.yaml
+0 −1 test/testinput/bufrtest_rtma_mesonet_mapping.yaml
+0 −1 test/testinput/bufrtest_satwnd_avhrr_mapping.yaml
+0 −1 test/testinput/bufrtest_satwnd_new_format_mapping.yaml
+0 −1 test/testinput/bufrtest_satwnd_old_format_mapping.yaml
+0 −1 test/testinput/bufrtest_sevcsr_mapping.yaml
+0 −1 test/testinput/bufrtest_sfcshp_mapping.yaml
+0 −1 test/testinput/bufrtest_simple_groupby_mapping.yaml
+0 −1 test/testinput/bufrtest_specific_subsets_by_query_mapping.yaml
+0 −1 test/testinput/bufrtest_specifying_subsets_mapping.yaml
+0 −1 test/testinput/bufrtest_split_mapping.yaml
+0 −1 test/testinput/bufrtest_wmo_amdar_multi_mapping.yaml
+0 −1 test/testinput/bufrtest_wmo_radiosonde_mapping.yaml
+0 −1 tools/CMakeLists.txt
+7 −1 tools/bufr2netcdf/CMakeLists.txt
+0 −8 tools/bufr2zarr/CMakeLists.txt
+0 −34 tools/bufr2zarr/bufr2zarr.py
2 changes: 1 addition & 1 deletion sorc/fv3-jedi
Open in desktop
Submodule fv3-jedi updated 3 files
+7 −0 test/CMakeLists.txt
+193 −0 test/testinput/lgetkf_linearobserver_hofx_reduceobs.yaml
+105 −0 test/testoutput/lgetkf_linearobserver_hofx_reduceobs.ref
2 changes: 1 addition & 1 deletion sorc/ioda
Open in desktop
Submodule ioda updated 24 files
+5 −0 share/ioda/yaml/iodatest_odb_radar_doppler_wind.yaml
+4 −0 share/ioda/yaml/validation/ObsSpace.yaml
+10 −14 src/ObsSpace.cc
+5 −0 src/distribution/Distribution.h
+18 −12 src/distribution/Halo.cc
+2 −0 src/distribution/Halo.h
+3 −0 src/distribution/InefficientDistribution.h
+7 −0 src/distribution/NonoverlappingDistribution.cc
+2 −0 src/distribution/NonoverlappingDistribution.h
+14 −7 src/engines/ioda/include/ioda/Engines/ODC/DataFromSQL.h
+10 −0 src/engines/ioda/include/ioda/Engines/ODC/OdbQueryParameters.h
+10 −10 src/engines/ioda/include/ioda/Engines/ODC/ParallelIoUtils.h
+2 −2 src/engines/ioda/include/ioda/Engines/ODC/RowsIntoLocationsSplitter.h
+9 −5 src/engines/ioda/include/ioda/Engines/ODC/RowsIntoLocationsSplitterBase.h
+15 −10 src/engines/ioda/src/ioda/Engines/ODC/DataFromSQL.cpp
+41 −8 src/engines/ioda/src/ioda/Engines/ODC/ODC.cpp
+161 −110 src/engines/ioda/src/ioda/Engines/ODC/ParallelIoUtils.cpp
+9 −0 src/engines/ioda/src/ioda/Engines/ODC/RowsIntoLocationsSplitter.cpp
+87 −6 src/engines/test/ioda/engine-odb/odb_parallel_io.yml
+50 −31 src/engines/test/ioda/engine-odb/test_odb_parallel_io.cpp
+13 −0 test/CMakeLists.txt
+40 −0 test/testinput/iodatest_obsspace_odc_radar.yaml
+45 −0 test/testinput/iodatest_obsspace_odc_radar_parallel_io.yaml
+279 −0 test/testinput/iodatest_obsspace_reduce_mpi.yaml
2 changes: 1 addition & 1 deletion sorc/iodaconv
Open in desktop
Submodule iodaconv updated 1 files
+6 −1 src/ncar-bufr2nc-fortran/prepbufr_mod.f90
2 changes: 1 addition & 1 deletion sorc/oops
Open in desktop
Submodule oops updated 19 files
+9 −1 src/CMakeLists.txt
+25 −13 src/oops/assimilation/GETKFSolver.h
+6 −6 src/oops/assimilation/GETKFSolverPert.h
+1 −1 src/oops/assimilation/LETKFSolver.h
+2 −2 src/oops/assimilation/LETKFSolverPert.h
+19 −17 src/oops/assimilation/LocalEnsembleSolver.h
+21 −1 src/oops/base/GeometryData.cc
+3 −3 src/oops/base/ObsError.h
+9 −10 src/oops/base/ObsErrors.h
+9 −70 src/oops/generic/ObsErrorBase.h
+0 −34 src/oops/generic/ObsErrorDiag.cc
+18 −52 src/oops/generic/ObsErrorDiag.h
+2 −15 src/oops/interface/ObsErrorBase.h
+156 −0 src/oops/runs/InterpolateStateBetweenModels.h
+19 −0 src/oops/util/for_each.cc
+296 −0 src/oops/util/for_each.h
+2 −3 src/oops/util/parameters/Parameters.h
+7 −21 src/test/base/ObsErrorCovariance.h
+322 −0 src/test/util/for_each.cc
2 changes: 1 addition & 1 deletion sorc/saber
Open in desktop
Submodule saber updated 3 files
+43 −34 src/saber/generic/DuplicateVariables.cc
+224 −218 src/saber/vader/DryAirDensityFromExnerm1.cc
+113 −116 src/saber/vader/MoistureControl.cc
2 changes: 1 addition & 1 deletion sorc/soca
Open in desktop
Submodule soca updated 22 files
+25 −4 external/mom6/mom6_files.cmake
+7 −3 src/soca/MLBalance/MLJac.h
+7 −4 test/testinput/3dvar_diffmlb.yml
+3 −3 test/testinput/letkf.yml
+1 −1 test/testinput/letkf_split_observer.yml
+3 −3 test/testinput/letkf_split_solver.yml
+2 −5 test/testref/3dhyb.test
+2 −5 test/testref/3dhyb_diffusion.test
+2 −5 test/testref/3dhybfgat_pseudo.test
+2 −11 test/testref/3dvar.test
+12 −15 test/testref/3dvar_diffmlb.test
+2 −11 test/testref/3dvar_lowres.test
+2 −6 test/testref/3dvar_moreice.test
+2 −9 test/testref/3dvar_nicas.test
+2 −5 test/testref/3dvar_single_ob.test
+2 −9 test/testref/3dvarfgat_pseudo.test
+2 −5 test/testref/4denvar.test
+2 −5 test/testref/4dhybenvar.test
+2 −5 test/testref/4dvar_htlm.test
+2 −5 test/testref/4dvar_identity.test
+97 −97 test/testref/letkf.test
+78 −78 test/testref/letkf_split_solver.test
2 changes: 1 addition & 1 deletion sorc/ufo
Open in desktop
Submodule ufo updated 52 files
+0 −3 .gitattributes
+1 −1 resources/CMakeLists.txt
+0 −3 resources/auxillary/IASI_EmisEigenVec.dat
+0 −3 resources/auxillary/IASI_EmisEigenVec_v2.dat
+0 −6,818 resources/bmatrix/gnssro/gnssro_bmatrix.txt
+0 −3 resources/bmatrix/rttov/amsr_bmatrix_70_test.dat
+0 −3 resources/bmatrix/rttov/atms_bmatrix_70_test.dat
+0 −3 resources/bmatrix/rttov/atovs_bmatrix_70_test.dat
+0 −3 resources/bmatrix/rttov/gmihigh_bmatrix_70_test.dat
+0 −3 resources/bmatrix/rttov/iasi_bmatrix_70_test.dat
+0 −3 resources/bmatrix/rttov/ssmis_bmatrix_70_test.dat
+0 −1,972 resources/rmatrix/gnssro/gnssro_ba_rmatrix.nl
+0 −2,125 resources/rmatrix/gnssro/gnssro_ba_rmatrix_avtemp.nl
+0 −3 resources/rmatrix/gnssro/gnssro_ba_rmatrix_latitude.nc4
+0 −1,972 resources/rmatrix/gnssro/gnssro_ba_rmatrix_latitude.nl
+0 −2,108 resources/rmatrix/gnssro/gnssro_ref_rmatrix_latitude.nl
+0 −3 resources/rmatrix/rttov/amsr_gcomw1_rmatrix_test.nc4
+0 −3 resources/rmatrix/rttov/atms_noaa_20_rmatrix_test.nc4
+0 −3 resources/rmatrix/rttov/atovs_metopb_rmatrix_test.nc4
+0 −3 resources/rmatrix/rttov/gmihigh_gpm_rmatrix_test.nc4
+0 −3 resources/rmatrix/rttov/iasi_metopb_rmatrix_test.nc4
+0 −3 resources/rmatrix/rttov/ssmis_dmspf17_rmatrix_test.nc4
+2 −1 src/mains/ObsErrorWithinGroupCovDiags.h
+13 −11 src/ufo/errors/ObsErrorCrossVarCov.cc
+10 −7 src/ufo/errors/ObsErrorCrossVarCov.h
+5 −3 src/ufo/errors/ObsErrorDiagonal.cc
+15 −5 src/ufo/errors/ObsErrorDiagonal.h
+4 −3 src/ufo/errors/ObsErrorWithinGroupCov.cc
+8 −3 src/ufo/errors/ObsErrorWithinGroupCov.h
+47 −45 src/ufo/filters/obsfunctions/ObsErrorFactorPressureCheck.cc
+2 −0 src/ufo/variabletransforms/CMakeLists.txt
+136 −0 src/ufo/variabletransforms/Cal_SatRadianceFromPCScores.cc
+138 −0 src/ufo/variabletransforms/Cal_SatRadianceFromPCScores.h
+2 −2 test/testinput/unit_tests/errors/metoffice_radiance_error_matrices.yaml
+4 −4 test/testinput/unit_tests/filters/amsr2_rttov_ops_qc_rttovonedvarcheck.yaml
+14 −14 test/testinput/unit_tests/filters/atms_rttov_ops_qc_rttovonedvarcheck.yaml
+4 −4 test/testinput/unit_tests/filters/atms_rttov_qc.yaml
+2 −2 test/testinput/unit_tests/filters/atovs_rttovonedvar_multiplatform.yaml
+2 −2 test/testinput/unit_tests/filters/atovs_rttovonedvar_transmittance.yaml
+2 −2 test/testinput/unit_tests/filters/atovs_rttovonedvar_transmittance_multiplatform.yaml
+4 −4 test/testinput/unit_tests/filters/gnssrobendmetoffice_obserror.yaml
+4 −4 test/testinput/unit_tests/filters/gnssrobendmetoffice_qc.yaml
+2 −2 test/testinput/unit_tests/filters/gnssrobendmetoffice_qc_profile.yaml
+3 −3 test/testinput/unit_tests/filters/gnssrorefmetoffice_qc.yaml
+15 −15 test/testinput/unit_tests/filters/iasi_rttov_ops_qc_rttovonedvarcheck.yaml
+2 −2 test/testinput/unit_tests/filters/obsfunctions/function_cloudcost.yaml
+2 −2 test/testinput/unit_tests/filters/obsfunctions/function_cloudcost_scattering.yaml
+2 −2 test/testinput/unit_tests/filters/obsfunctions/function_cloudcost_surfwind.yaml
+2 −2 test/testinput/unit_tests/filters/ssmis_rttov_ops_qc_rttovonedvarcheck.yaml
+12 −0 test/testinput/unit_tests/variabletransforms/CMakeLists.txt
+62 −0 test/testinput/unit_tests/variabletransforms/variabletransforms_radiancefrompcscores.yaml
+4 −4 test/ufo/Reconditioning.h