Add support for Ursa

build.sh

@@ -72,7 +72,7 @@ while getopts "p:t:c:hvdfa" opt; do
 done
 
 case ${BUILD_TARGET} in
-  hera | orion | hercules | wcoss2 | noaacloud | gaeac5 | gaeac6 )
+  hera | orion | hercules | wcoss2 | noaacloud | gaeac5 | gaeac6 | ursa )
     echo "Building GDASApp on $BUILD_TARGET"
     source $dir_root/ush/module-setup.sh
     module use $dir_root/modulefiles

modulefiles/GDAS/ursa.intel.lua

@@ -0,0 +1,93 @@
+help([[
+Load environment for running the GDAS application with Intel compilers and MPI.
+]])
+
+local pkgName    = myModuleName()
+local pkgVersion = myModuleVersion()
+local pkgNameVer = myModuleFullName()
+
+prepend_path("MODULEPATH", '/contrib/spack-stack/spack-stack-1.9.1/envs/ue-oneapi-2024.2.1/install/modulefiles/Core')
+
+load("stack-oneapi/2024.2.1")
+load("stack-intel-oneapi-mpi/2021.13")
+load("stack-python/3.11.7")
+
+load("cmake/3.30.2")
+load("gettext/0.22.5")
+load("curl/8.10.1")
+load("zlib/1.2.13")
+load("git/2.43.5")
+load("hdf5/1.14.3")
+load("parallel-netcdf/1.12.3")
+load("netcdf-c/4.9.2")
+load("nccmp/1.9.1")
+load("netcdf-fortran/4.6.1")
+load("nco/5.2.4")
+load("parallelio/2.6.2")
+load("wget/1.21.1")
+load("boost/1.84.0")
+load("bufr/12.1.0")
+load("git-lfs/3.5.1")
+load("ecbuild/3.7.2")
+load("openjpeg/2.3.1")
+load("eccodes/2.33.0")
+load("eigen/3.4.0")
+load("openblas/0.3.24")
+load("eckit/1.28.3")
+load("fftw/3.3.10")
+load("fckit/0.13.2")
+load("fiat/1.4.1")
+load("fms/2024.02")
+load("esmf/8.8.0")
+load("atlas/0.40.0")
+load("sp/2.5.0")
+load("gsl-lite/0.37.0")
+load("libjpeg/2.1.0")
+load("krb5/1.21.1-1")
+load("libtirpc/1.3.3")
+load("hdf/4.2.15")
+load("jedi-cmake/1.4.0")
+load("libpng/1.6.37")
+load("libxt/1.3.0")
+load("libxmu/1.2.1")
+load("libxpm/3.5.17")
+load("libxaw/1.0.16")
+load("udunits/2.2.28")
+load("ncview/2.1.9")
+load("netcdf-cxx4/4.3.1")
+load("json/3.11.3")
+--load("crtm/v2.4_jedi")
+load("rocoto/1.3.7")
+load("prod_util/2.1.1")
+
+load("py-jinja2/3.1.4")
+load("py-netcdf4/1.7.1.post2")
+load("py-pybind11/2.13.5")
+load("py-pycodestyle/2.11.0")
+load("py-pyyaml/6.0.2")
+load("py-scipy/1.14.1")
+load("py-xarray/2024.7.0")
+load("py-f90nml/1.4.3")
+load("py-pip/23.1.2")
+load("py-click/8.1.7")
+
+setenv("CC","mpiicx")
+setenv("CXX","mpiicpx")
+setenv("FC","mpiifort")
+setenv("I_MPI_CC", "icx")
+setenv("I_MPI_CXX", "icpx")
+setenv("I_MPI_F90", "ifort")
+
+local mpiexec = '/apps/slurm/default/bin/srun'
+local mpinproc = '-n'
+setenv('MPIEXEC_EXEC', mpiexec)
+setenv('MPIEXEC_NPROC', mpinproc)
+
+setenv("CRTM_FIX","/scratch3/NCEPDEV/da/role.jedipara/GDASApp/fix/crtm/2.4.0")
+setenv("GDASAPP_TESTDATA","/scratch3/NCEPDEV/da/role.jedipara/GDASApp/testdata")
+setenv("GDASAPP_UNIT_TEST_DATA_PATH", "/scratch3/NCEPDEV/da/role.jedipara/GDASApp/unittestdata")
+
+whatis("Name: ".. pkgName)
+whatis("Version: ".. tostring(pkgVersion))
+whatis("Category: GDASApp")
+whatis("Description: Load all libraries needed for GDASApp")

test/atm/global-workflow/jjob_ens_final.sh

@@ -48,6 +48,8 @@ fi
 # Execute j-job
 if [[ $machine = 'HERA' || $machine = 'ORION' || $machine = 'HERCULES' ]]; then
     sbatch --ntasks=1 --account=$ACCOUNT --qos=batch --time=00:10:00 --export=ALL --wait --output=atmensanlfinal-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_FINALIZE
+elif [[ $machine = 'URSA' ]]; then
+    sbatch --ntasks=1 --account=$ACCOUNT --qos=batch --partition=u1-compute --time=00:10:00 --export=ALL --wait --output=atmensanlfinal-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_FINALIZE
 else
     ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_FINALIZE
 fi

test/atm/global-workflow/jjob_ens_inc.sh

@@ -47,7 +47,9 @@ fi
 
 # Execute j-job
 if [[ $machine = 'HERA' || $machine = 'ORION' || $machine = 'HERCULES' ]]; then
-    sbatch --nodes=1 --ntasks=36 --account=$ACCOUNT --qos=batch --time=00:30:00 --export=ALL --wait --output=atmensanlfv3inc-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_FV3_INCREMENT
+    sbatch --nodes=1 --ntasks=6 --account=$ACCOUNT --qos=batch --time=00:30:00 --export=ALL --wait --output=atmensanlfv3inc-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_FV3_INCREMENT
+elif [[ $machine = 'URSA' ]]; then
+    sbatch --nodes=1 --ntasks=6 --account=$ACCOUNT --qos=batch --partition=u1-compute --time=00:30:00 --export=ALL --wait --output=atmensanlfv3inc-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_FV3_INCREMENT     
 else
     ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_FV3_INCREMENT
 fi

test/atm/global-workflow/jjob_ens_init.sh

@@ -113,6 +113,8 @@ cp $EXPDIR/config.base_lobsdiag_forenkf_false $EXPDIR/config.base
 # Execute j-job
 if [[ $machine = 'HERA' || $machine = 'ORION' || $machine = 'HERCULES' ]]; then
     sbatch --ntasks=1 --account=$ACCOUNT --qos=batch --time=00:10:00 --export=ALL --wait --output=atmensanlinit-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_INITIALIZE
+elif [[ $machine = 'URSA' ]]; then
+    sbatch --ntasks=1 --account=$ACCOUNT --qos=batch --partition=u1-compute --time=00:10:00 --export=ALL --wait --output=atmensanlinit-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_INITIALIZE    
 else
     ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_INITIALIZE
 fi

test/atm/global-workflow/jjob_ens_init_split.sh

@@ -116,6 +116,8 @@ cp $EXPDIR/config.base_lobsdiag_forenkf_true $EXPDIR/config.base
 # Execute j-job
 if [[ $machine = 'HERA' || $machine = 'ORION' || $machine = 'HERCULES' ]]; then
     sbatch --ntasks=1 --account=$ACCOUNT --qos=batch --time=00:10:00 --export=ALL --wait --output=atmensanlinit_split-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_INITIALIZE
+elif [[ $machine = 'URSA' ]]; then
+     sbatch --ntasks=1 --account=$ACCOUNT --qos=batch --partition=u1-compute --time=00:10:00 --export=ALL --wait --output=atmensanlinit_split-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_INITIALIZE
 else
     ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_INITIALIZE
 fi

test/atm/global-workflow/jjob_ens_letkf.sh

@@ -53,7 +53,9 @@ cp $EXPDIR/config.base_lobsdiag_forenkf_false $EXPDIR/config.base
 
 # Execute j-job
 if [[ $machine = 'HERA' || $machine = 'ORION' || $machine = 'HERCULES' ]]; then
-    sbatch --nodes=1 --ntasks=36 --account=$ACCOUNT --qos=batch --time=00:30:00 --export=ALL --wait --output=atmensanlletkf-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_LETKF
+    sbatch --nodes=1 --ntasks=6 --account=$ACCOUNT --qos=batch --time=00:30:00 --export=ALL --wait --output=atmensanlletkf-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_LETKF
+elif [[ $machine = 'URSA' ]]; then
+     sbatch --nodes=1 --ntasks=6 --account=$ACCOUNT --qos=batch --partition=u1-compute --mem="96Gb" --time=00:30:00 --export=ALL --wait --output=atmensanlletkf-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_LETKF
 else
     ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_LETKF
 fi

test/atm/global-workflow/jjob_ens_obs.sh

@@ -53,7 +53,9 @@ cp $EXPDIR/config.base_lobsdiag_forenkf_true $EXPDIR/config.base
 
 # Execute j-job
 if [[ $machine = 'HERA' || $machine = 'ORION' || $machine = 'HERCULES' ]]; then
-    sbatch --nodes=1 --ntasks=36 --account=$ACCOUNT --qos=batch --time=00:30:00 --export=ALL --wait --output=atmensanlobs-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_OBS
+    sbatch --nodes=1 --ntasks=6 --account=$ACCOUNT --qos=batch --time=00:30:00 --export=ALL --wait --output=atmensanlobs-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_OBS
+elif [[ $machine = 'URSA' ]]; then
+    sbatch --nodes=1 --ntasks=6 --account=$ACCOUNT --qos=batch --partition=u1-compute --time=00:30:00 --export=ALL --wait --output=atmensanlobs-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_OBS
 else
     ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_OBS
 fi

test/atm/global-workflow/jjob_ens_sol.sh

@@ -53,7 +53,9 @@ cp $EXPDIR/config.base_lobsdiag_forenkf_true $EXPDIR/config.base
 
 # Execute j-job
 if [[ $machine = 'HERA' || $machine = 'ORION' || $machine = 'HERCULES' ]]; then
-    sbatch --nodes=1 --ntasks=36 --account=$ACCOUNT --qos=batch --time=00:30:00 --export=ALL --wait --output=atmensanlsol-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_SOL
+    sbatch --nodes=1 --ntasks=6 --account=$ACCOUNT --qos=batch --time=00:30:00 --export=ALL --wait --output=atmensanlsol-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_SOL
+elif [[ $machine = 'URSA' ]]; then
+     sbatch --nodes=1 --ntasks=6 --account=$ACCOUNT --qos=batch --partition=u1-compute --time=00:30:00 --export=ALL --wait --output=atmensanlsol-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_SOL
 else
     ${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_SOL
 fi

test/atm/global-workflow/jjob_var_final.sh

@@ -48,6 +48,8 @@ fi
 # Execute j-job
 if [[ $machine = 'HERA' || $machine = 'ORION' || $machine = 'HERCULES' ]]; then
     sbatch --ntasks=1 --account=$ACCOUNT --qos=batch --time=00:10:00 --export=ALL --wait --output=atmanlfinal-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATM_ANALYSIS_FINALIZE
+elif [[ $machine = 'URSA' ]]; then
+    sbatch --ntasks=1 --account=$ACCOUNT --qos=batch --partition=u1-compute --time=00:10:00 --export=ALL --wait --output=atmanlfinal-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATM_ANALYSIS_FINALIZE
 else
     ${HOMEgfs}/jobs/JGLOBAL_ATM_ANALYSIS_FINALIZE
 fi

test/atm/global-workflow/jjob_var_inc.sh

@@ -48,6 +48,8 @@ fi
 # Execute j-job
 if [[ $machine = 'HERA' || $machine = 'ORION' || $machine = 'HERCULES' ]]; then
     sbatch --ntasks=6 --account=$ACCOUNT --qos=batch --time=00:10:00 --export=ALL --wait --output=atmanlfv3inc-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATM_ANALYSIS_FV3_INCREMENT
+elif [[ $machine = "URSA" ]]; then
+    sbatch --ntasks=6 --account=$ACCOUNT --qos=batch --partition=u1-compute --time=00:10:00 --export=ALL --wait --output=atmanlfv3inc-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATM_ANALYSIS_FV3_INCREMENT
 else
     ${HOMEgfs}/jobs/JGLOBAL_ATM_ANALYSIS_FV3_INCREMENT
 fi

test/atm/global-workflow/jjob_var_init.sh

@@ -124,6 +124,8 @@ done
 # Execute j-job
 if [[ $machine = 'HERA' || $machine = 'ORION' || $machine = 'HERCULES' ]]; then
     sbatch --ntasks=1 --account=$ACCOUNT --qos=batch --time=00:10:00 --export=ALL --wait --output=atmanlinit-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATM_ANALYSIS_INITIALIZE
+elif [[ $machine = 'URSA' ]]; then
+    sbatch --ntasks=1 --account=$ACCOUNT --qos=batch --partition=u1-compute --time=00:10:00 --export=ALL --wait --output=atmanlinit-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATM_ANALYSIS_INITIALIZE
 else
     ${HOMEgfs}/jobs/JGLOBAL_ATM_ANALYSIS_INITIALIZE
 fi

test/atm/global-workflow/jjob_var_run.sh

@@ -51,6 +51,8 @@ fi
 # Execute j-job
 if [[ $machine = 'HERA' || $machine = 'ORION' || $machine = 'HERCULES' ]]; then
     sbatch --ntasks=6 --account=$ACCOUNT --qos=batch --time=00:20:00 --export=ALL --wait --output=atmanlvar-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATM_ANALYSIS_VARIATIONAL
+elif [[ $machine = 'URSA' ]]; then
+    sbatch --ntasks=6 --account=$ACCOUNT --qos=batch --partition=u1-compute --time=00:20:00 --mem=96Gb --export=ALL --wait --output=atmanlvar-%j.out ${HOMEgfs}/jobs/JGLOBAL_ATM_ANALYSIS_VARIATIONAL
 else
     ${HOMEgfs}/jobs/JGLOBAL_ATM_ANALYSIS_VARIATIONAL
 fi

ush/detect_machine.sh

@@ -31,6 +31,10 @@ case $(hostname -f) in
   hfe1[0-2]) MACHINE_ID=hera ;; ### hera10-12
   hecflow01) MACHINE_ID=hera ;; ### heraecflow01
 
+  ufe0[1-9]) MACHINE_ID=ursa ;; ### ursa01-09
+  ufe1[0-2]) MACHINE_ID=ursa ;; ### ursa10-12
+  uecflow01) MACHINE_ID=ursa ;; ### ursaecflow01
+
   s4-submit.ssec.wisc.edu) MACHINE_ID=s4 ;; ### s4
 
   fe[1-8]) MACHINE_ID=jet ;; ### jet01-8
@@ -73,9 +77,14 @@ elif [[ -d /lfs/h1 && ! -d /lfs/h3 ]]; then
 elif [[ -d /mnt/lfs5 ]]; then
   # We are on NOAA Jet
   MACHINE_ID=jet
-elif [[ -d /scratch1 ]]; then
-  # We are on NOAA Hera
-  MACHINE_ID=hera
+elif [[ -d /scratch3 ]]; then
+  # We are on NOAA Hera or Ursa
+  mount=$(findmnt -n -o SOURCE /home)
+  if [[ ${mount} =~ "ursa" ]]; then
+    MACHINE_ID=ursa
+  else
+    MACHINE_ID=hera
+  fi
 elif [[ -d /work ]]; then
   # We are on MSU Orion or Hercules
   mount=$(findmnt -n -o SOURCE /home)

ush/module-setup.sh

@@ -15,6 +15,13 @@ elif [[ $MACHINE_ID = hera* ]] ; then
     fi
     module purge
 
+elif [[ $MACHINE_ID = ursa* ]] ; then
+    # We are on NOAA Ursa
+    if ( ! eval module help > /dev/null 2>&1 ) ; then
+        source /apps/lmod/lmod/init/bash
+    fi
+    module purge
+
 elif [[ $MACHINE_ID = orion* ]] ; then
     # We are on Orion
     if ( ! eval module help > /dev/null 2>&1 ) ; then

utils/test/prepdata.sh

@@ -6,15 +6,6 @@
 # Get the machine hostname
 MACHINE_NAME=$(hostname)
 
-# Check if the machine name is "hera"
-if [[ "$MACHINE_NAME" =~ ^hfe0[1-9]$ || "$MACHINE_NAME" =~ ^hfe1[01]$ ]]; then
-    echo "Running on hera, loading anaconda modules."
-    module use -a /contrib/anaconda/modulefiles
-    module load anaconda/latest
-else
-    echo "Not running on hera, skipping anaconda module loading."
-fi
-
 set -e
 
 cdl2nc4() {
@@ -23,7 +14,7 @@ cdl2nc4() {
   local input_cdl="$2"
 
   echo "Generating ${output_nc4}"
-  ncgen -o "$output_nc4" "$input_cdl"
+  ncgen -4 -o "$output_nc4" "$input_cdl"
 }
 
 project_source_dir=$1