Add automated CI testing on Hera

ci/hera.sh

@@ -0,0 +1,7 @@
+GDAS_CI_ROOT=/scratch1/NCEPDEV/da/Cory.R.Martin/CI/GDASApp
+GDAS_CI_HOST='hera'
+export GDAS_MODULE_USE=$GDAS_CI_ROOT/repo/modulefiles
+export SLURM_ACCOUNT=da-cpu
+export SALLOC_ACCOUNT=$SLURM_ACCOUNT
+export SBATCH_ACCOUNT=$SLURM_ACCOUNT
+export SLURM_QOS=debug

modulefiles/GDAS/hera.lua

@@ -1,24 +1,65 @@
--- NOAA RDHPCS Hera Modulefile for UFS-DA
 help([[
+Load environment for running the GDAS application with Intel compilers and MPI.
 ]])
 
 local pkgName    = myModuleName()
 local pkgVersion = myModuleVersion()
 local pkgNameVer = myModuleFullName()
 
+conflict(pkgName)
+
 local jedi_opt = '/scratch1/NCEPDEV/jcsda/jedipara/opt/modules'
 setenv('JEDI_OPT', jedi_opt)
 local jedi_core = pathJoin(jedi_opt, 'modulefiles/core')
 prepend_path("MODULEPATH", jedi_core)
 
-load('jedi/intel-impi/2020.2')
+prepend_path("MODULEPATH", '/scratch1/NCEPDEV/da/python/opt/modulefiles/stack')
+
+load("cmake/3.20.1")
+load("git-lfs/2.11.0")
+
+load("jedi-intel/2020.2")
+load("szip/2.1.1")
+load("zlib/1.2.11")
+load("udunits/2.2.28")
+load("gsl_lite/0.37.0")
+load("jedi-impi/2020.2")
+
+load("hdf5/1.12.0")
+load("pnetcdf/1.12.1")
+load("netcdf/4.7.4")
+
+load("boost-headers/1.68.0")
+load("eigen/3.3.7")
+load("bufr/noaa-emc-11.5.0")
+
+load("nccmp/1.8.7.0")
+load("pio/2.5.1-debug")
+
+load("ecbuild/ecmwf-3.6.1")
+load("eckit/ecmwf-1.16.0")
+load("fckit/ecmwf-0.9.2")
+load("atlas/ecmwf-0.24.1")
+load("nco/4.9.1")
+
+load("pybind11/2.7.0")
+load("json/3.9.1")
+load("json-schema-validator/2.1.0")
+
+load("hpc/1.2.0")
+load("miniconda3/4.6.14")
+load("gdasapp/1.0.0")
+
+setenv("CC","mpiicc")
+setenv("FC","mpiifort")
+setenv("CXX","mpiicpc")
 
 local mpiexec = '/apps/slurm/default/bin/srun'
 local mpinproc = '-n'
 setenv('MPIEXEC_EXEC', mpiexec)
 setenv('MPIEXEC_NPROC', mpinproc)
 
 whatis("Name: ".. pkgName)
-whatis("Version: " .. pkgVersion)
-whatis("Category: UFS-DA")
-whatis("Description: Load JEDI-Stack for UFS-DA")
+whatis("Version: ".. pkgVersion)
+whatis("Category: GDASApp")
+whatis("Description: Load all libraries needed for GDASApp")

modulefiles/GDAS/orion.lua

@@ -13,7 +13,7 @@ prepend_path("MODULEPATH", jedi_core)
 
 prepend_path("MODULEPATH", '/work2/noaa/da/python/opt/modulefiles/stack')
 
-load("cmake/3.18.1")
+load("cmake/3.22.1")
 load("git/2.28.0")
 load("git-lfs/2.13.2")
 

test/CMakeLists.txt

@@ -15,7 +15,8 @@ file(DOWNLOAD
   EXPECTED_HASH SHA256=${SHA}
   )
 # Extract downloaded tarball.
-file(ARCHIVE_EXTRACT INPUT ${TAR})
+file(ARCHIVE_EXTRACT INPUT ${TAR}
+  VERBOSE)
 
 # list of test files to install
 list(APPEND test_data
@@ -29,7 +30,7 @@ install(FILES ${test_data}
 ##### unit tests
 # test for python coding norms
 add_test(NAME test_gdasapp_check_python_norms
-         COMMAND pycodestyle -v --config ./.pycodestyle .
+         COMMAND pycodestyle -v --config ./.pycodestyle ./ush
          WORKING_DIRECTORY ${PROJECT_SOURCE_DIR})
 # test for ush/check_yaml_keys.py
 add_test(NAME test_gdasapp_check_yaml_keys