Update CMEPS for wave slow loop coupling and provide hooks for S2SW coupling through CMEPS#61

Merged

DeniseWorthen merged 1680 commits into

NOAA-EMC:emc/developfrom

DeniseWorthen:feature/wavslowbs1

Feb 3, 2022

This pull request is big! We're only showing the most recent 250 commits

Commits on Jul 17, 2021

first implementation of exchange grid
Mariana Vertenstein
committed

Commits on Jul 18, 2021

bug fixes
Mariana Vertenstein
committed
fixes to get flux computation on ocean grid working
Mariana Vertenstein
committed
refactor of mapping file specification
Mariana Vertenstein
committed
more updates to have new code working on ogrid
Mariana Vertenstein
committed

Commits on Jul 19, 2021

Commits on Jul 21, 2021

Commits on Jul 22, 2021

Commits on Jul 23, 2021

cleanup
Mariana Vertenstein
committed
fix for atm-wav configuration
Ufuk Turuncoglu
committed
Merge pull request #5 from hafs-community/feature/hafs_coupleww3
BinLiu-NOAA
authored
sync with ESCOMP master
Ufuk Turuncoglu
committed

Commits on Jul 25, 2021

refactored med_phases_aofluxes_mod for more code reuse
Mariana Vertenstein
committed
more refactor updates to modularize aoflux calculation
Mariana Vertenstein
committed
more modularization of med_phases_aoflux
Mariana Vertenstein
committed
more cleanup of esmFldsExchange_cesm_mod
Mariana Vertenstein
committed

Commits on Jul 26, 2021

removed DEBUG writes
Mariana Vertenstein
committed
fixed problem when atm/ocn grid are the same and compilation with gnu
Mariana Vertenstein
committed

Commits on Jul 28, 2021

Commits on Jul 29, 2021

Commits on Jul 30, 2021

update to fix xgrid mapping to ocn
mvertens
committed
added second order conservative for Sa_u and Sa_v to xgrid
mvertens
committed
fixed xgrid 2nd order mapping
mvertens
committed

Commits on Jul 31, 2021

updates for glc prep
mvertens
committed

Commits on Aug 1, 2021

Merge branch 'feature/fix_mom6diags' into feature/exchange_grid
Mariana Vertenstein
committed
fixed but for So_t to ice in esmFldsExchange_cesm.F90
Mariana Vertenstein
committed

Commits on Aug 2, 2021

Commits on Aug 3, 2021

fix typo in config_component_cesm.xml
Mariana Vertenstein
committed
Merge pull request #218 from mvertens/feature/fix_cimeconfig_bug
jedwards4b
authored

Commits on Aug 4, 2021

fixed run sequence bug for G and C compsets
Mariana Vertenstein
committed
Merge pull request #219 from mvertens/feature/fix_runseq_bug
jedwards4b
authored

Commits on Aug 5, 2021

Commits on Aug 6, 2021

Commits on Aug 7, 2021

fixed restart issues and runtime-issues associated with new xgrid logic
Mariana Vertenstein
committed
changed testlist
Mariana Vertenstein
committed
updated logic for write_restart_at_endofrun
Mariana Vertenstein
committed
fix for ERS restart problem
Mariana Vertenstein
committed
Merge pull request #224 from mvertens/feature/fix_ers_restart
jedwards4b
authored
merged to cmeps0.13.23
Mariana Vertenstein
committed
more fixes to get aoflux calculation working for all compsets tested
Mariana Vertenstein
committed

Commits on Aug 8, 2021

fixed bug introduced for F compsets in med.F90
Mariana Vertenstein
committed
a bit more cleanup
Mariana Vertenstein
committed

Commits on Aug 9, 2021

got xgrid and agrid working and verified for f09_f09_mg17 F2000climo
Mariana Vertenstein
committed
more fixes to get both C, G and F compsets all working
Mariana Vertenstein
committed
incorporated normalization of one initializaiton in route handle creation subroutine
Mariana Vertenstein
committed
Merge pull request #4 from billsacks/pass_ozone
billsacks
authored
Merge remote-tracking branch 'origin/master' into pass_ozone
billsacks
committed

Commits on Aug 10, 2021

Merge pull request #212 from billsacks/pass_ozone
mvertens
authored
Merge branch 'master' into feature/fix_xgrid_bugs
Mariana Vertenstein
committed

Commits on Aug 11, 2021

fixed hafs testing problem
Mariana Vertenstein
committed
put in fix for history output of agrid aoflux output on ocn grid
Mariana Vertenstein
committed
Merge branch 'NOAA-EMC:emc/develop' into feature/history_updates_add_albedos
DeniseWorthen
authored
removed references to is_local%wrap%do_med_aoflux
Mariana Vertenstein
committed
removed references to is_local%wrap%do_med_aoflux
Mariana Vertenstein
committed

Commits on Aug 12, 2021

Merge pull request #223 from mvertens/feature/fix_xgrid_bugs
mvertens
authored

Commits on Aug 16, 2021

Merge pull request #1 from DeniseWorthen/feature/history_updates_add_albedos
mvertens
authored

Commits on Aug 17, 2021

updated med_merge_mod and associated prep phase interfaces and verified that ERS_Vnuopc_Ld5.f19_g17.B1850.cheyenne_intel.allactive-defaultio was bfb with cmeps0.3.25
Mariana Vertenstein
committed
Merge pull request #5 from jedwards4b/jedwards/smartsim
jedwards4b
authored
more updates to refactor accum and verified that ERS_Vnuopc_Ld5.f19_g17.B1850.cheyenne_intel.allactive-defaultio was bfb with cmeps0.13.25
Mariana Vertenstein
committed
update for prep_rof
Mariana Vertenstein
committed
removed all references to is_local%wrap%FBImpAccum - this is no longer needed. Validated that results were still bfb
Mariana Vertenstein
committed
replaced export accumulator field arrays with just the ocn accumulated field bundle and counter - verified bfb
Mariana Vertenstein
committed
refactored and significantly cleaned up the InitializeIPDv03p4 routine in med.F90
Mariana Vertenstein
committed

Commits on Aug 19, 2021

Commits on Aug 21, 2021

Commits on Aug 24, 2021

fixes needed for ufs testing failures
Mariana Vertenstein
committed
added encoding='utf-8' to open file lines in buildexe and buildnml
Mariana Vertenstein
committed

Commits on Aug 28, 2021

merge to master
Mariana Vertenstein
committed
remote conflict in merge
Mariana Vertenstein
committed
reverted changes to master versions
Mariana Vertenstein
committed
revert to master version
Mariana Vertenstein
committed

Commits on Aug 29, 2021

removed component history phases as run sequence options and moved the calls to post phases
Mariana Vertenstein
committed

Commits on Aug 30, 2021

more cleanup of new history capability for averaging
Mariana Vertenstein
committed
average history file fixes
Mariana Vertenstein
committed

Commits on Aug 31, 2021

got time average alarms to work correctly
Mariana Vertenstein
committed
shr_flux_mod change
jedwards4b
committed

Commits on Sep 1, 2021

Commits on Sep 2, 2021

refactor of med_io_mod time initialization
Mariana Vertenstein
committed

Commits on Sep 4, 2021

more refactoring of history output to enable code reuse
Mariana Vertenstein
committed

Commits on Sep 5, 2021

add chkerrs
DeniseWorthen
committed

Commits on Sep 6, 2021

more cleanup
Mariana Vertenstein
committed

Commits on Sep 8, 2021

more code reuse introduced in med_phases_history_mod
Mariana Vertenstein
committed

Commits on Sep 9, 2021

refactored history all write to use model clock
Mariana Vertenstein
committed
only one shared modelio namelist per component
jedwards4b
committed
add pylint required encoding to open
jedwards4b
committed
one more open statement
jedwards4b
committed

Commits on Sep 10, 2021

Merge pull request #227 from jedwards4b/share_modelio_namelist
jedwards4b
authored
put in call to mediator history output in med_phases_aofluxes_mod.F90
Mariana Vertenstein
committed
only one shared modelio namelist per component

jedwards4b
authored and
Mariana Vertenstein
committed
add pylint required encoding to open

jedwards4b
authored and
Mariana Vertenstein
committed

Commits on Sep 11, 2021

updates for NUOPC_Realize call if mesh is transferred
Mariana Vertenstein
committed
merged to head of feature/refactor_accum
Mariana Vertenstein
committed
resolved conflict with master
Mariana Vertenstein
committed
Merge pull request #226 from mvertens/feature/refactor_accum
mvertens
authored
Merge branch 'master' into feature/history_refactor
Mariana Vertenstein
committed

Commits on Sep 12, 2021

more cleanup and code sharing
Mariana Vertenstein
committed

Commits on Sep 15, 2021

fixes based on aux_glc testing
Mariana Vertenstein
committed

Commits on Sep 20, 2021

updates to have l2x1yr aux file written
Mariana Vertenstein
committed
updates to clean up med_phases_prep_glc
Mariana Vertenstein
committed
added fixes for multiple ice sheets
Mariana Vertenstein
committed
add new rof to lnd field
swensosc
committed

Commits on Sep 21, 2021

Merge remote-tracking branch 'escomp/master' into feature/updcmeps
DeniseWorthen
committed

Commits on Sep 22, 2021

backed out changes to med_phases_post_gcl
Mariana Vertenstein
committed
bug fixed to med_phases_post_glc
Mariana Vertenstein
committed
Revert change that shouldn't have been in this branch and add a comment
billsacks
committed
Fix github actions (#12)
fischer-ncar
authored
fixed accumulation to rof from lnd restart issue
Mariana Vertenstein
committed
updated documentation from newdoc
Mariana Vertenstein
committed

Commits on Sep 24, 2021

fixed issues with alarms
Mariana Vertenstein
committed
fixed restart problem for aux_cam and aux_clm tests
Mariana Vertenstein
committed
Merge pull request #230 from swensosc/master
mvertens
authored
fixed compilation bug
Mariana Vertenstein
committed
removed num_icesheets and added mesh_glc
Mariana Vertenstein
committed
Merge pull request #232 from mvertens/feature/restart_bugfix
mvertens
authored

Commits on Sep 25, 2021

refatored inst output mode
Mariana Vertenstein
committed
Merge remote-tracking branch 'mvertens/feature/bugfix_postglc' into feature/bugfix_postglc
billsacks
committed
refactored aux and avg history files and restart output
Mariana Vertenstein
committed

Commits on Sep 26, 2021

added more debugging info
Mariana Vertenstein
committed

Commits on Sep 27, 2021

updates to master
Mariana Vertenstein
committed
made the F2000 test nuopc rather than mct
Mariana Vertenstein
committed
refactored testlist
Mariana Vertenstein
committed

Commits on Sep 29, 2021

Commits on Sep 30, 2021

Merge tag 'cmeps0.13.30' into feature/bugfix_postglc
billsacks
committed

Commits on Oct 6, 2021

Remove buggy double loop over ice sheet instances
billsacks
committed

Commits on Oct 7, 2021

add testmod for y100k
jedwards4b
committed

Commits on Oct 13, 2021

updates required in code review for PR
Mariana Vertenstein
committed
updates to master
Mariana Vertenstein
committed
Merge pull request #228 from mvertens/feature/history_refactor
mvertens
authored
Merge remote-tracking branch 'escomp/master' into feature/updcmeps
DeniseWorthen
committed

Commits on Oct 14, 2021

fix for cmeps issue #235 and removal of null setting for local pointer variables (issue #234)
Mariana Vertenstein
committed
fix for issue #236
Mariana Vertenstein
committed

Commits on Oct 15, 2021

Commits on Oct 18, 2021

Commits on Oct 20, 2021

Commits on Oct 22, 2021

Merge pull request #242 from billsacks/feature/bugfix_postglc
jedwards4b
authored

Commits on Oct 26, 2021

Remove reference to Argonne and Sandia. (#14)
fischer-ncar
authored

Commits on Oct 27, 2021

add wave->atm field
DeniseWorthen
committed

Commits on Oct 29, 2021

changes needed to fix mom6 diag issues
Mariana Vertenstein
committed
more bug fixes found in validation of MOM6
Mariana Vertenstein
committed
updates to budget table needed for MOM6
Mariana Vertenstein
committed
Merge branch 'NOAA-EMC:emc/develop' into feature/wavcoupling
DeniseWorthen
authored
add more wav coupling fields
DeniseWorthen
committed
change mapping for z0
DeniseWorthen
committed

Commits on Oct 30, 2021

Commits on Nov 2, 2021

added error checks on output from call diag_xxx
Mariana Vertenstein
committed
Merge pull request #248 from mvertens/feature/budget_table_updates
mvertens
authored
bugfix for #247
Mariana Vertenstein
committed

Commits on Nov 3, 2021

Commits on Nov 11, 2021

moved shr_flux_mod to cmeps
Mariana Vertenstein
committed
pruned directory tree
Mariana Vertenstein
committed
removed .gitignore
Mariana Vertenstein
committed
Merge branch 'feature/share_prune' into feature/refactor_directories
Mariana Vertenstein
committed
more cesm directory refactor
Mariana Vertenstein
committed
moved shr_flux_mod to flux_atmocn_mod in its own directory
Mariana Vertenstein
committed
cleanup of flux_atmocn_mod
Mariana Vertenstein
committed
renamed util to ufs
Mariana Vertenstein
committed
changes needed for new directory restructuring
Mariana Vertenstein
committed
moved files into ufs
Mariana Vertenstein
committed
pruned directory and renamed some files
Mariana Vertenstein
committed
change flux_atmocn_mod to be consistent with changes in mediator
Mariana Vertenstein
committed
more cleanup of ufs directory
Mariana Vertenstein
committed
fixed compilation problems
Mariana Vertenstein
committed

Commits on Nov 12, 2021

current tested changes for wave coupling
DeniseWorthen
committed

Commits on Nov 14, 2021

fix merge of stokes to ocn
DeniseWorthen
committed
implemented different interface for ufs flux_atmocn_mod
Mariana Vertenstein
committed
add compile fixes for ufs
DeniseWorthen
committed

Commits on Nov 15, 2021

renamed flux_atmocn_mod.F90 to shr_flux_mod since cam calls this for shr_flux_adjust_constants
Mariana Vertenstein
committed
more cleanup of ufs and cesm differences
Mariana Vertenstein
committed
removed reference to util and replaced with ufs
Mariana Vertenstein
committed
clean up of Makefile
Mariana Vertenstein
committed
removed references to use of med_kind_mod and introduced ufs_kind_mod
Mariana Vertenstein
committed
added ufs_kind_mod in more places
Mariana Vertenstein
committed
fixed ufs Makefile
Mariana Vertenstein
committed
changed util to ufs
Mariana Vertenstein
committed

Commits on Nov 16, 2021

removed unneeded files needed by ufs
Mariana Vertenstein
committed
Merge pull request #256 from mvertens/feature/refactor_directories
mvertens
authored

Commits on Nov 23, 2021

Optional tiled history files for ATM (#257)
DeniseWorthen
authored

Commits on Dec 9, 2021

Namelist trigger for passing channel depth fields from ROF to LND (#244)
ekluzek
authored

Commits on Dec 16, 2021

Merge branch 'NOAA-EMC:emc/develop' into feature/wavcoupling
DeniseWorthen
authored

Commits on Dec 21, 2021

change Sw_zo to Sw_z0 for hafs
DeniseWorthen
committed

Commits on Dec 23, 2021

switch src/dst masks for wave
DeniseWorthen
committed

Commits on Dec 26, 2021

adds DOUT_STAGING_ROOT variable (#246)
jedwards4b
authored

Commits on Dec 27, 2021

Commits on Dec 31, 2021

Commits on Jan 3, 2022

add retrieval of wav accum values on restart
DeniseWorthen
committed

Commits on Jan 12, 2022

Commits on Jan 21, 2022

simplify src/dst masking for nems
DeniseWorthen
committed

Commits on Jan 22, 2022

Commits on Jan 31, 2022

fixes for cesm run sequence
Mariana Vertenstein
committed

Commits on Feb 1, 2022