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Issues list

temp directory is having issues
#44 opened May 1, 2024 by shukwong
1
implement Harmonize mode only enhancement New feature or request
#40 opened Mar 22, 2023 by shukwong
The workflow skips many steps if the bed file contains only 1 line bug Something isn't working
#39 opened Jan 27, 2023 by shukwong
move Docker registry from quay.io to ghcr.io enhancement New feature or request
#36 opened Apr 6, 2022 by shukwong
prepend_labels for strelka calls runs longer than 2 hours enhancement New feature or request
#35 opened Jan 18, 2022 by shukwong
2
fixing the symlinks in strelka2_AddSampleName rule bug Something isn't working
#34 opened Dec 14, 2021 by shukwong
1
GLnexus merge memory requirements calculation enhancement New feature or request
#33 opened Dec 1, 2021 by shukwong
handle alternate contigs and scaffolds in bed file
#30 opened Oct 15, 2021 by shukwong
write a script to generate the samples.txt from a directory with BAM/cram files enhancement New feature or request
#29 opened Aug 3, 2021 by shukwong
set default path to glnexus_strelka2_config enhancement New feature or request
#28 opened Jul 15, 2021 by shukwong
add support for remote files on object store as input on Biowulf enhancement New feature or request
#25 opened Jul 2, 2021 by shukwong
2
create conda wrapper for GLnexus merge enhancement New feature or request
#22 opened Jun 22, 2021 by shukwong
make bed file (and gzipped bed file) optional enhancement New feature or request
#18 opened Jun 21, 2021 by shukwong
1
Have option to specify number of cpus by rule in CCAD enhancement New feature or request
#15 opened Jun 16, 2021 by shukwong
add checks to make sure the samples.txt file is tab delimited enhancement New feature or request
#10 opened Jun 13, 2021 by shukwong
2
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