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Merged
mzhangw merged 22 commits into from
Mar 15, 2018
Merged

Do2boots #49

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9b527dd
a RAD doxygen branch checkouted from NCAR/master on Jan/17/2018
mzhangw Jan 18, 2018
8ea4699
add SAMF and part of SAMF_shal documentation
mzhangw Jan 19, 2018
47ba78a
currently documenting main subroutine of each physics scheme
mzhangw Jan 23, 2018
d06a3c2
add mfshalcnv documentation and clean up in other files.
mzhangw Jan 24, 2018
cb99f0d
minor fix
mzhangw Jan 24, 2018
39be11b
format cleanup
mzhangw Jan 25, 2018
89c9fcf
improve documentation and add figures.
mzhangw Feb 2, 2018
a68f18b
fix some doxygen format warnings
mzhangw Feb 2, 2018
dea0655
more work on doxygen
mzhangw Feb 5, 2018
e8d2557
format fixes
mzhangw Feb 5, 2018
dc0cd17
doxy fix
mzhangw Feb 6, 2018
717c6f8
fix SAMF doxygen
mzhangw Feb 6, 2018
11b71a9
a new doc with bootstrapped stylesheet
mzhangw Feb 9, 2018
a1bf4da
a few fix was done.
mzhangw Feb 12, 2018
f7dad94
multiple fix is done.
mzhangw Feb 15, 2018
fdf93be
more doxygen work are done.
mzhangw Feb 27, 2018
826225f
add GFS_gwdc.png
mzhangw Feb 27, 2018
3bed171
add ice3lay doc.
mzhangw Mar 6, 2018
524bf78
fix bugs
mzhangw Mar 7, 2018
12300f5
minor changes to fix warnings
mzhangw Mar 9, 2018
596acf0
some txt fix per Ligia's comments.
mzhangw Mar 14, 2018
ae650ea
get rid of group diagram as Ligia's request. and some doc fix in SAMF…
mzhangw Mar 15, 2018
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3 changes: 2 additions & 1 deletion physics/GFS_RRTMG_post.f90
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Expand Up @@ -3,7 +3,8 @@
module GFS_RRTMG_post
contains

!>\defgroup GFS_RRTMG_post GFS RRTMG Scheme Post
!>\defgroup GFS_RRTMG_post GFS RRTMG Post
!>\ingroup RRTMG
!! @{
!> \section arg_table_GFS_RRTMG_post_init Argument Table
!!
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4 changes: 3 additions & 1 deletion physics/GFS_RRTMG_pre.f90
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@@ -1,12 +1,14 @@
!> \file GFS_RRTMG_pre.f90
!! This file contains

module GFS_RRTMG_pre

public GFS_RRTMG_pre_run

contains

!> \defgroup GFS_RRTMG_pre GFS RRTMG Scheme Pre
!> \defgroup GFS_RRTMG_pre GFS RRTMG Pre
!>\ingroup RRTMG
!! @{
!! \section arg_table_GFS_RRTMG_pre_init Argument Table
!!
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32 changes: 23 additions & 9 deletions physics/GFS_calpreciptype.f90
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@@ -1,15 +1,24 @@
!> \file GFS_calpreciptype.F90
!! This file contains the subroutine that calculates dominant precipitation type (calpreciptype)
!! and its post. It is adopted from post but was made into a column to used by GFS model.

!> \file GFS_calpreciptype.f90
!! This file contains the subroutine that calculates dominant precipitation type (calpreciptype),
!! which provides precipitation forcing for LSM.

!>\defgroup CALPRECIPTYPE GFS Dominant Precipitation Type
!!\brief This scheme contains the subroutine that calculates dominant
!! precipitation type and its post, which provides precipitation forcing
!! to LSM
!!
!!\section intraphysics Intraphysics Communication
!
module GFS_calpreciptype
contains

!> \section arg_table_GFS_calpreciptype_init Argument Table
!!
! \section arg_table_GFS_calpreciptype_init Argument Table
!
subroutine GFS_calpreciptype_init
end subroutine GFS_calpreciptype_init

!>\defgroup gfs_calpreciptype GFS calpreciptype Main
!!\ingroup CALPRECIPTYPE
!!\brief This subroutine calculates dominant precipitation type, which provides precipitation forcing for LSM.
!> \section arg_table_GFS_calpreciptype_run Argument Table
!! | local var name | longname | description | units | rank | type | kind | intent | optional |
!! |----------------|------------------------------------------------------------------------|------------------------------------------------------------|---------|------|---------|-----------|--------|----------|
Expand Down Expand Up @@ -41,6 +50,10 @@ end subroutine GFS_calpreciptype_init
!! | srflag | flag_for_precipitation_type | snow(1)/rain(0) flag for precipitation | flag | 1 | real | kind_phys | out | F |
!! | tprcp | nonnegative_lwe_thickness_of_precipitation_amount_on_dynamics_timestep | nonnegative precipitation amount in one dynamics time step | m | 1 | real | kind_phys | out | F |
!!
!! \section general_calpreciptype General Algorithm
!!
!! \section detailed_calpreciptype Detailed Algorithm
!! @{
subroutine GFS_calpreciptype_run(kdt,nrcm,im,ix,lm,lp1,randomno, &
cal_pre, &
gt0,gq0,prsl,prsi, rainc,frain,rain1, &
Expand Down Expand Up @@ -308,6 +321,7 @@ subroutine GFS_calpreciptype_run(kdt,nrcm,im,ix,lm,lp1,randomno, &

return
end subroutine GFS_calpreciptype_run
!! @}
!
!&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&
!
Expand Down Expand Up @@ -1513,8 +1527,8 @@ subroutine calwxt_dominant(nalg,rain,freezr,sleet,snow, &
return
end subroutine calwxt_dominant

!> \section arg_table_GFS_calpreciptype_finalize Argument table
!!
! \section arg_table_GFS_calpreciptype_finalize Argument table
!
subroutine GFS_calpreciptype_finalize
end subroutine GFS_calpreciptype_finalize

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1 change: 1 addition & 0 deletions physics/GFS_rad_time_vary.f90
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Expand Up @@ -4,6 +4,7 @@ module GFS_rad_time_vary
contains

!>\defgroup GFS_rad_time_vary GFS RRTMG Update
!!\ingroup RRTMG
!! @{
!! \section arg_table_GFS_rad_time_vary_init Argument Table
!!
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3 changes: 2 additions & 1 deletion physics/GFS_radlw_post.f90
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Expand Up @@ -3,7 +3,8 @@
module GFS_radlw_post
contains

!>\defgroup GFS_radlw_post GFS RRTMG/RADLW Scheme Post
!>\defgroup GFS_radlw_post GFS RADLW Post
!! \ingroup RRTMG
!! @{
!> \section arg_table_GFS_radlw_post_init Argument Table
!!
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3 changes: 2 additions & 1 deletion physics/GFS_radlw_pre.f90
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Expand Up @@ -4,7 +4,8 @@
module GFS_radlw_pre
contains

!>\defgroup GFS_radlw_pre GFS RADLW Scheme Pre
!>\defgroup GFS_radlw_pre GFS RADLW Pre
!!\ingroup RRTMG
!! @{
!> \section arg_table_GFS_radlw_pre_init Argument Table
!!
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3 changes: 2 additions & 1 deletion physics/GFS_radsw_post.f90
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Expand Up @@ -3,7 +3,8 @@
module GFS_radsw_post
contains

!>\defgroup GFS_radsw_post GFS RRTMG/RADSW Scheme Post
!>\defgroup GFS_radsw_post GFS RADSW Post
!!\ingroup RRTMG
!! @{
!> \section arg_table_GFS_radsw_post_init Argument Table
!!
Expand Down
3 changes: 2 additions & 1 deletion physics/GFS_radsw_pre.f90
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Expand Up @@ -4,7 +4,8 @@
module GFS_radsw_pre
contains

!>\defgroup GFS_radsw_pre GFS RADSW Scheme Pre
!>\defgroup GFS_radsw_pre GFS RADSW Pre
!!\ingroup RRTMG
!! @{
!> \section arg_table_GFS_radsw_pre_init Argument Table
!!
Expand Down
10 changes: 10 additions & 0 deletions physics/GFS_radupdate.f90
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@@ -1,6 +1,15 @@
!>\file GFS_radupdate.f90
!! This file calls many update subroutines to check and update radiation required but
!! time varying data sets and module variables.
module GFS_radupdate
contains

!>\defgroup GFS_radupdate_run RRTMG Update
!!\ingroup RRTMG
!>\brief This subroutine calls many update subroutines to check and update radiation
!! required but time varying data sets and module variables.
!>\section gen_radupdate General Algorithm
!> @{
subroutine GFS_radupdate_run ( idate,jdate,deltsw,deltim,lsswr, me, &
& slag,sdec,cdec,solcon, ictmflg, isolar)

Expand Down Expand Up @@ -170,5 +179,6 @@ subroutine GFS_radupdate_run ( idate,jdate,deltsw,deltim,lsswr, me, &
!...................................
end subroutine GFS_radupdate_run
!-----------------------------------
!> @}

end module GFS_radupdate
2 changes: 0 additions & 2 deletions physics/GFS_surface_loop_control.f
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Expand Up @@ -4,7 +4,6 @@
!> \defgroup GFS_surface_loop_control GFS_surface_loop_control scheme
!! @{
!! \brief Brief description of the parameterization
!! \section diagram Calling Hierarchy Diagram
!! \section intraphysics Intraphysics Communication

module GFS_surface_loop_control_part1
Expand Down Expand Up @@ -57,7 +56,6 @@ end module GFS_surface_loop_control_part1
!> \defgroup GFS_surface_loop_control GFS_surface_loop_control scheme
!! @{
!! \brief Brief description of the parameterization
!! \section diagram Calling Hierarchy Diagram
!! \section intraphysics Intraphysics Communication

module GFS_surface_loop_control_part2
Expand Down
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