Rename celltypist column

Mye-InfoBank · Jan 29, 2024 · e0b8d3f · e0b8d3f
1 parent c1467f7
commit e0b8d3f
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/bin/annotate_celltypist.py b/bin/annotate_celltypist.py
@@ -40,6 +40,6 @@
     adata.obs.index, ["predicted_labels", "conf_score"]
 ]
 
-df_celltypist.columns = ["celltypist_prediction", "celltypist_confidence"]
+df_celltypist.columns = ["cell_type:celltypist", "celltypist_confidence"]
 
 df_celltypist.to_pickle(args.output.name)
diff --git a/bin/celltypist_majority.py b/bin/celltypist_majority.py
@@ -19,7 +19,7 @@
 
 df_celltypist = df_celltypist.reindex(clustering.index)
 
-predictions = df_celltypist["celltypist_prediction"]
+predictions = df_celltypist["cell_type:celltypist"]
 
 majority_key = args.clustering_key + "_celltypist_majority"