Fix imports

.github/workflows/cdci.yml

@@ -9,33 +9,32 @@ on:
     types: [published]
 
 jobs:
-  # format:
-  #   runs-on: ubuntu-latest
-  #   steps:
-  #     - uses: actions/checkout@v4
-  #     - uses: psf/black@stable 
-  # lint:
-  #   name: Lint with ruff
-  #   runs-on: ubuntu-latest
-  #   steps:
-  #     - uses: actions/checkout@v4
+  format:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: psf/black@stable
+  lint:
+    name: Lint with ruff
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
 
-  #     - uses: actions/setup-python@v5
-  #       with:
-  #         python-version: "3.11"
-  #     - name: Install ruff
-  #       run: | 
-  #         pip install ruff
-  #     - name: Lint with ruff  
-  #       run: |
-  #         # stop the build if there are Python syntax errors or undefined names
-  #         ruff check .
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.11"
+      - name: Install ruff
+        run: | 
+          pip install ruff
+      - name: Lint with ruff  
+        run: |
+          ruff check .
   test:
     name: Test
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
+        python-version: ["3.9", "3.10", "3.11", "3.12"]
     steps:
       - uses: actions/checkout@v4
       - name: Set up Python ${{ matrix.python-version }}
@@ -51,7 +50,6 @@ jobs:
           pip install -e .
       # - name: Run tests
       #   run: python -m pytest tests
-
 
 
   publish:

pyproject.toml

@@ -6,7 +6,7 @@ dynamic = ["version"]
 description = "A Python package for plotting related to multimodal molecular data. Works with acore."
 license = { text = "GNU General Public License v3" }
 readme = "README.md"
-requires-python = ">=3.9"
+requires-python = ">=3.9,<3.13"
 classifiers = [
     "Development Status :: 2 - Pre-Alpha",
     "Intended Audience :: Developers",
@@ -27,12 +27,16 @@ dependencies = [
     "beautifulsoup4",
     "requests",
     "dash", # from dash import html
-    # "networkx",
+    "networkx",
     "matplotlib",
-    # "cy-jupyterlab",
-    # "nltk",
-    # "webweb"
-    # "acore",
+    "kaleido",
+    "pyvis",
+    "wordcloud",
+    "cyjupyter",
+    "nltk",
+    "webweb",
+    "acore",
+    "dash-cytoscape",
 ]
 
 [project.optional-dependencies]
@@ -64,5 +68,7 @@ Documentation = "https://analytics-core.readthedocs.io/"
 
 
 [build-system]
-requires = ["setuptools"]
+requires = ["setuptools", "setuptools_scm>=8"]
 build-backend = "setuptools.build_meta"
+
+[tool.setuptools_scm]