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add n4 correction script #5

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ivadomed#3

@cakester cakester requested a review from dyt811 March 26, 2021 22:24
requirements.txt Outdated
@@ -20,3 +20,4 @@ pytest-ordering
sphinx-jsonschema
pytest-console-scripts
pre-commit==2.10.1
SimpleITK==2.1.0.dev211
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since SimpleITK/SimpleITK#1248 this issue, only the latest simpleitk from pre release works =/

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coveralls commented Mar 26, 2021

Pull Request Test Coverage Report for Build 697911514

  • 0 of 34 (0.0%) changed or added relevant lines in 1 file are covered.
  • No unchanged relevant lines lost coverage.
  • Overall coverage decreased (-0.4%) to 75.276%

Changes Missing Coverage Covered Lines Changed/Added Lines %
ivadomed/scripts/n4_correction.py 0 34 0.0%
Totals Coverage Status
Change from base Build 686790450: -0.4%
Covered Lines: 5456
Relevant Lines: 7248

💛 - Coveralls

@@ -20,5 +20,4 @@ pytest-ordering
sphinx-jsonschema
pytest-console-scripts
pre-commit==2.10.1
--find-links https://github.com/SimpleITK/SimpleITK/releases/tag/latest
SimpleITK==2.1.0.dev211
SimpleITK
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Could you instead try:
SimpleITK --pre --find-links https://github.com/SimpleITK/SimpleITK/releases/tag/latest?

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we were forced to use the prerelease branch of simpleitk because of this commit SimpleITK/SimpleITK@c7f759f, its not a good idea to use prerelase version of libraries, so reverting the n4_correction script to a version older than that commit, which would fix ci as well

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3 participants