Add plain msgpack serialization #267
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loriab
reviewed
Jun 29, 2021
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may want to look at the below if haven't already:
- https://github.com/MolSSI/QCElemental/blob/master/qcelemental/models/molecule.py#L983
- https://github.com/MolSSI/QCElemental/blob/master/qcelemental/tests/test_molecule.py#L209 (those
to_filelook likedtype=dtypeneeded) - https://github.com/MolSSI/QCElemental/blob/master/qcelemental/tests/test_molecule.py#L240
- https://github.com/MolSSI/QCElemental/blob/master/qcelemental/util/__init__.py#L28
|
Added to the init file and fixed the test. I guess I didn't need to fix the test, since For the to/from file, I removed the |
loriab
reviewed
Jun 29, 2021
Co-authored-by: Lori A. Burns <[email protected]>
loriab
reviewed
Jun 29, 2021
loriab
reviewed
Jun 30, 2021
| elif dtype == "msgpack-ext": | ||
| with open(filename, "rb") as infile_bytes: | ||
| data = deserialize(infile_bytes.read(), encoding="msgpack-ext") | ||
| dtype = "dict" |
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since for reading json=json-ext and msgpack=msgpack-ext, aren't only 2 if's needed?
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Yes, although we should make it explicit. Ie, for json, use json-ext and for msgpack, use msgpack-ext (with comment that the -ext are backwards compatible)
loriab
approved these changes
Jun 30, 2021
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Description
Adds ability to serialize to plain msgpack format.
The current
msgpack-extencoding serializes numpy arrays as numpy arrays, which is not portable (that is, deserializing would require python and qcelemental). This adds a plainmsgpackencoding that converts numpy arrays to lists, as is done with the existingjsonencoding.Changelog description
Adds plain msgpack serialization
Status