Improve code coverage.

Minimap2onGPU · Oct 27, 2022 · 962c8c3 · 962c8c3
1 parent c9ea792
commit 962c8c3
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Showing 2 changed files with 9 additions and 1 deletion.
diff --git a/cli.c b/cli.c
@@ -182,7 +182,7 @@ int main(int argc, char *argv[])
 	ksw_extz_t ez;
 	gzFile fp[2];
 
-	while ((c = getopt(argc, argv, "t:w:R:e:rscxvgz:A:B:O:E:Ka")) >= 0) {
+	while ((c = getopt(argc, argv, "t:w:R:e:rscxvgqz:A:B:O:E:Ka")) >= 0) {
 		if (c == 't') algo = optarg;
 		else if (c == 'w') w = atoi(optarg);
 		else if (c == 'R') rep = atoi(optarg);
@@ -194,6 +194,7 @@ int main(int argc, char *argv[])
 		else if (c == 'x') flag |= KSW_EZ_EXTZ_ONLY;
 		else if (c == 'v') flag |= KSW_EZ_REV_CIGAR;
 		else if (c == 'g') flag |= KSW_EZ_APPROX_MAX | KSW_EZ_APPROX_DROP;
+		else if (c == 'q') flag |= KSW_EZ_EQX;
 		else if (c == 'K') no_kalloc = 1;
 		else if (c == 'A') a = atoi(optarg);
 		else if (c == 'B') b = atoi(optarg);

diff --git a/coverage.sh b/coverage.sh
@@ -22,6 +22,13 @@ $KSW2COV $u $t -v ${@:2}
 # Enables KSW_EZ_EXTZ_ONLY  
 $KSW2COV $u $t -x ${@:2} 
 
+# Enables KSW_EZ_APPROX_MAX  
+$KSW2COV $u $t -g ${@:2} 
+
+# Enables KSW_EZ_EQX  
+# This option is disabled because the baseline kernel segmentation faults with this option enabled
+# $KSW2COV $u $t -q ${@:2} 
+
 # Sets end_bonus and zdrop
 $KSW2COV $u $t ${@:2} -x -e 1 -z 1