Version 4.5

Fixes issue #13 ... updated to be compatible with more recent versions of bowtie. Thanks to @adbsd for pointing this out.

Version 4.4

Updated for compatibility with samtools versions 1.x -- accommodates change in the samtools sort syntax that occurred in samtools 1.x.

v4.3

November 7, 2013

First version that should be used by anyone!

This program was first used in the paper "A non-canonical plant microRNA target site"
Brousse C, Liu Q, Beuclair L, Deremetz A, Axtell MJ, Bouché N.
Nucleic Acids Research doi:10.1093/nar/gku157 PMID: 24561804