Add script to plot online MOC #415
There are no files selected for viewing
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,182 @@ | ||
| [runs] | ||
| ## options related to the run to be analyzed and reference runs to be | ||
| ## compared against | ||
|
|
||
| # mainRunName is a name that identifies the simulation being analyzed. | ||
| mainRunName = 20180410.A_WCYCL1950_HR.ne120_oRRS18v3_ICG.theta | ||
|
|
||
| # preprocessedReferenceRunName is the name of a reference run that has been | ||
| # preprocessed to compare against (or None to turn off comparison). Reference | ||
| # runs of this type would have preprocessed results because they were not | ||
| # performed with MPAS components (so they cannot be easily ingested by | ||
| # MPAS-Analysis) | ||
| preprocessedReferenceRunName = None | ||
|
|
||
| # config file for a reference run to which this run will be compared. The | ||
| # analysis should have already been run to completion once with this config | ||
| # file, so that the relevant MPAS climatologies already exist and have been | ||
| # remapped to the comparison grid. Leave this option commented out if no | ||
| # reference run is desired. | ||
| # referenceRunConfigFile = /path/to/config/file | ||
|
|
||
| [execute] | ||
| ## options related to executing parallel tasks | ||
|
|
||
| # the number of parallel tasks (1 means tasks run in serial, the default) | ||
| parallelTaskCount = 4 | ||
|
|
||
| # the parallelism mode in ncclimo ("serial" or "bck") | ||
| # Set this to "bck" (background parallelism) if running on a machine that can | ||
| # handle 12 simultaneous processes, one for each monthly climatology. | ||
| ncclimoParallelMode = bck | ||
|
|
||
| [input] | ||
| ## options related to reading in the results to be analyzed | ||
|
|
||
| # directory containing model results | ||
| baseDirectory = /projects/ClimateEnergy_2/azamatm/E3SM_simulations/20180410.A_WCYCL1950_HR.ne120_oRRS18v3_ICG.theta/run | ||
|
|
||
| # names of ocean and sea ice meshes (e.g. oEC60to30v3, oQU240v3, oRRS30to10v3, etc.) | ||
| mpasMeshName = oRRS18to6v3 | ||
|
|
||
| # Directory for mapping files (if they have been generated already). If mapping | ||
| # files needed by the analysis are not found here, they will be generated and | ||
| # placed in the output mappingSubdirectory | ||
| mappingDirectory = /projects/ccsm/acme/diagnostics_data/mapping | ||
|
|
||
| # names of namelist and streams files, either a path relative to baseDirectory | ||
| # or an absolute path. | ||
| oceanNamelistFileName = mpas-o_in | ||
| oceanStreamsFileName = streams.ocean | ||
| seaIceNamelistFileName = mpas-cice_in | ||
| seaIceStreamsFileName = streams.cice | ||
|
|
||
| [output] | ||
| ## options related to writing out plots, intermediate cached data sets, logs, | ||
| ## etc. | ||
|
|
||
| # directory where analysis should be written | ||
| baseDirectory = /dir/to/analysis/output | ||
|
|
||
| # a list of analyses to generate. Valid names can be seen by running: | ||
| # ./run_mpas_analysis --list | ||
| # This command also lists tags for each analysis. | ||
| # Shortcuts exist to generate (or not generate) several types of analysis. | ||
| # These include: | ||
| # 'all' -- all analyses will be run | ||
| # 'all_<tag>' -- all analysis with a particular tag will be run | ||
| # 'all_<component>' -- all analyses from a given component (either 'ocean' | ||
| # or 'seaIce') will be run | ||
| # 'only_<component>', 'only_<tag>' -- all analysis from this component or | ||
| # with this tag will be run, and all | ||
| # analysis for other components or | ||
| # without the tag will be skipped | ||
| # 'no_<task_name>' -- skip the given task | ||
| # 'no_<component>', 'no_<tag>' -- in analogy to 'all_*', skip all analysis | ||
| # tasks from the given compoonent or with | ||
| # the given tag. Do | ||
| # ./run_mpas_analysis --list | ||
| # to list all task names and their tags | ||
| # an equivalent syntax can be used on the command line to override this | ||
| # option: | ||
| # ./run_mpas_analysis config.analysis --generate \ | ||
| # all,no_ocean,all_timeSeries | ||
| generate = ['all', 'no_landIceCavities'] | ||
|
|
||
| [climatology] | ||
| ## options related to producing climatologies, typically to compare against | ||
| ## observations and previous runs | ||
|
|
||
| # the first year over which to average climatalogies | ||
| startYear = 10 | ||
| # the last year over which to average climatalogies | ||
| endYear = 10 | ||
|
|
||
| [timeSeries] | ||
| ## options related to producing time series plots, often to compare against | ||
| ## observations and previous runs | ||
|
|
||
| # start and end years for timeseries analysis. Using out-of-bounds values | ||
| # like start_year = 1 and end_year = 9999 will be clipped to the valid range | ||
| # of years, and is a good way of insuring that all values are used. | ||
| startYear = 8 | ||
| endYear = 10 | ||
|
|
||
| [index] | ||
| ## options related to producing nino index. | ||
|
|
||
| # start and end years for the nino 3.4 analysis. Using out-of-bounds values | ||
| # like start_year = 1 and end_year = 9999 will be clipped to the valid range | ||
| # of years, and is a good way of insuring that all values are used. | ||
| # For valid statistics, index times should include at least 30 years | ||
| startYear = 1 | ||
| endYear = 9999 | ||
|
|
||
| [oceanObservations] | ||
| ## options related to ocean observations with which the results will be compared | ||
|
|
||
| # directory where ocean observations are stored | ||
| baseDirectory = /projects/ccsm/acme/diagnostics_data/observations/Ocean | ||
| sstSubdirectory = SST | ||
| sssSubdirectory = SSS | ||
| mldSubdirectory = MLD | ||
| ninoSubdirectory = Nino | ||
| mhtSubdirectory = MHT | ||
| soseSubdirectory = SOSE | ||
|
|
||
| [oceanPreprocessedReference] | ||
| ## options related to preprocessed ocean reference run with which the results | ||
| ## will be compared (e.g. a POP, CESM or ACME v0 run) | ||
|
|
||
| # directory where ocean reference simulation results are stored | ||
| baseDirectory = /projects/ccsm/acme/diagnostics_data/reference_runs/ACMEv0_lowres/B1850C5_ne30_v0.4/ocn/postprocessing | ||
|
|
||
| [seaIceObservations] | ||
| ## options related to sea ice observations with which the results will be | ||
| ## compared | ||
|
|
||
| # directory where sea ice observations are stored | ||
| baseDirectory = /projects/ccsm/acme/diagnostics_data/observations/SeaIce | ||
|
|
||
| [seaIcePreprocessedReference] | ||
| ## options related to preprocessed sea ice reference run with which the results | ||
| ## will be compared (e.g. a CICE, CESM or ACME v0 run) | ||
|
|
||
| # directory where ocean reference simulation results are stored | ||
| baseDirectory = /projects/ccsm/acme/diagnostics_data/reference_runs/ACMEv0_lowres/B1850C5_ne30_v0.4/ice/postprocessing | ||
|
|
||
| [timeSeriesSeaIceAreaVol] | ||
| ## options related to plotting time series of sea ice area and volume | ||
|
|
||
| # plot on polar plot | ||
| polarPlot = False | ||
|
|
||
| [regions] | ||
| # Directory containing mask files for ocean basins and ice shelves | ||
| regionMaskDirectory = /projects/ccsm/acme/diagnostics_data/region_masks | ||
|
|
||
| [climatologyMapSoseTemperature] | ||
| ## options related to plotting climatology maps of Antarctic | ||
| ## potential temperature at various levels, including the sea floor against | ||
| ## reference model results and SOSE reanalysis data | ||
|
|
||
| # Times for comparison times (Jan, Feb, Mar, Apr, May, Jun, Jul, Aug, Sep, Oct, | ||
| # Nov, Dec, JFM, AMJ, JAS, OND, ANN) | ||
| seasons = ['JFM', 'JAS', 'ANN'] | ||
|
|
||
| # list of depths in meters (positive up) at which to analyze, 'top' for the | ||
| # sea surface, 'bot' for the sea floor | ||
| depths = ['top', -200, -400, -600, -800, 'bot'] | ||
|
|
||
| [climatologyMapSoseSalinity] | ||
| ## options related to plotting climatology maps of Antarctic | ||
| ## salinity at various levels, including the sea floor against | ||
| ## reference model results and SOSE reanalysis data | ||
|
|
||
| # Times for comparison times (Jan, Feb, Mar, Apr, May, Jun, Jul, Aug, Sep, Oct, | ||
| # Nov, Dec, JFM, AMJ, JAS, OND, ANN) | ||
| seasons = ['JFM', 'JAS', 'ANN'] | ||
|
|
||
| # list of depths in meters (positive up) at which to analyze, 'top' for the | ||
| # sea surface, 'bot' for the sea floor | ||
| depths = ['top', -200, -400, -600, -800, 'bot'] |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
I think we want to keep 2 blank lines between each section so it's easier to find section. @gstreletz did a lot of work to put in this formatting.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Oops, sorry. I thought this was config.default. Ignore my comment above.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
I only removed it because it wasn't consistent in the config example cases: in most cases there weren't blank lines, so I thought of just removing this one.
Instead, config.defaults has the blank lines between each section.