Investigate ICGC BAM Slicing with the score-client

[agduncan94]

Install the score client and select a region for BAM slicing. Generate a corresponding index file. Create an alignment track and point them to these files. Do the tracks work?

Next, try the same approach but using FUSE mounting (also requires the score client). Create an alignment track and point them to these files. Do the tracks work? The benefit of FUSE is that only blocks needed are pulled.

Could these use the BAM index files available?

See bottom of https://dcc.icgc.org/repositories/files/FI9994 for FUSE in action.