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scbs 0.3.4 - initial release
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@LKremer LKremer released this 16 Jun 19:45
· 97 commits to master since this release
0.3.4
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Learn about vigilant mode.

This is the initial release of scbs, including all the features described in our bioRxiv preprint.
The following commands are available in this release:

  • scbs prepare: Collect and store sc-methylation data for quick access
  • scbs filter: Filter low-quality cells based on coverage and mean methylation
  • scbs smooth: Smooth the pseudobulk of single cell methylation data
  • scbs scan: Scan the genome to discover regions with variable methylation
  • scbs matrix: Make a methylation matrix, similar to a count matrix in scRNA-seq
  • scbs profile: Plot mean methylation around a group of genomic features
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