wip: capture wip/restore-2026-07-24-phenotype-tooling-rebase (audit 2026-07-24..08-02)

[KooshaPari]

User description

Automated audit capture of local dirty state.

• Branch: wip/restore-2026-07-24-phenotype-tooling-rebase
• Captured and pushed during the cross-drive audit sessions (2026-07-24 to 2026-08-02).
• Working tree changes preserved; no destructive operations.

---

CodeAnt-AI Description

Standardize the pull request template for clearer submissions

What Changed

• Added a dedicated change-type checklist for bug fixes, features, breaking changes, and documentation updates
• Reorganized testing guidance and contributor checks into a simpler checklist
• Removed the previous related-issue section and specific verification checkboxes

Impact

✅ Clearer pull request categories
✅ More consistent testing information
✅ Easier submission checklist

💡 Usage Guide

Checking Your Pull Request

Every time you make a pull request, our system automatically looks through it. We check for security issues, mistakes in how you're setting up your infrastructure, and common code problems. We do this to make sure your changes are solid and won't cause any trouble later.

Talking to CodeAnt AI

Got a question or need a hand with something in your pull request? You can easily get in touch with CodeAnt AI right here. Just type the following in a comment on your pull request, and replace "Your question here" with whatever you want to ask:

@codeant-ai ask: Your question here

This lets you have a chat with CodeAnt AI about your pull request, making it easier to understand and improve your code.

Example

@codeant-ai ask: Can you suggest a safer alternative to storing this secret?

Preserve Org Learnings with CodeAnt

You can record team preferences so CodeAnt AI applies them in future reviews. Reply directly to the specific CodeAnt AI suggestion (in the same thread) and replace "Your feedback here" with your input:

@codeant-ai: Your feedback here

This helps CodeAnt AI learn and adapt to your team's coding style and standards.

Example

@codeant-ai: Do not flag unused imports.

Retrigger review

Ask CodeAnt AI to review the PR again, by typing:

@codeant-ai: review

Check Your Repository Health

To analyze the health of your code repository, visit our dashboard at https://app.codeant.ai. This tool helps you identify potential issues and areas for improvement in your codebase, ensuring your repository maintains high standards of code health.

[gemini-code-assist]

Caution

The consumer version of Gemini Code Assist on GitHub has been sunset. All code review activity has officially ceased.

[codeant-ai]

🤖 CodeAnt AI — Review Status

Status	Commit	Started (UTC)	Finished (UTC)
✅ Reviewed your PR	ab07abe	Aug 03, 2026 · 00:49	00:50

[codeant-ai]

---

Thanks for using CodeAnt! 🎉

We're free for open-source projects. if you're enjoying it, help us grow by sharing.

Share on X ·
Reddit ·
LinkedIn

[Copilot]

Copilot was unable to review this pull request because the user who requested the review has reached their quota limit.

[coderabbitai]

Warning

Review limit reached

@KooshaPari, you've reached your PR review limit, so we couldn't start this review.

Next review available in: 18 minutes

Enable usage-based reviews in Billing to review now. Otherwise, wait until the next included review is available.
You're only billed for reviews past your plan's rate limits ($0.25/file).

How can I continue?

After more reviews become available, a review can be triggered using the @coderabbitai review command as a PR comment. Alternatively, push new commits to this PR.

To avoid repeated limits, reduce automatic review volume by pausing incremental auto-reviews earlier, using label-based review opt-in, excluding WIP or generated PR titles, or requesting reviews manually when the PR is ready. If your team needs uninterrupted high-volume reviews, an organization admin can enable usage-based reviews.

How do review limits work?

CodeRabbit enforces per-developer PR review limits for each organization. Most developers receive the normal plan review availability.

For paid Pro and Pro+ PR reviews, CodeRabbit uses adaptive limits for sustained high-volume activity. When a developer's recent PR review activity reaches the 95th percentile or higher among CodeRabbit users, additional reviews become available more gradually as earlier reviews age out of the rolling window.

Please refer docs for additional details.

Review details

⚙️ Run configuration

Configuration used: Organization UI

Review profile: ASSERTIVE

Plan: Pro Plus

Run ID: 20f39425-2cd1-4e6b-bfee-5b8eb259c91a

📥 Commits

Reviewing files that changed from the base of the PR and between 3b952d6 and ab07abe.

⛔ Files ignored due to path filters (1)

• Cargo.lock is excluded by !**/*.lock

📒 Files selected for processing (1)

• crates/policystack/.github/PULL_REQUEST_TEMPLATE.md

---

Thanks for using CodeRabbit! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

_{Comment @coderabbitai help to get the list of available commands.}

[sonarqubecloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud

[KooshaPari]

Closing as superseded. The wip-capture branch was a snapshot of the audit window (2026-07-24..08-02) and the contents have already been absorbed by main commits since then. Branch preserved locally for reference.