fix(mobile): wait out SQLite locks and use WAL in encrypted store

[iscekic]

Changelog for users

• Session and draft writes no longer fail with database is locked while another connection holds the lock; the encrypted store waits up to five seconds instead of failing immediately.
• The encrypted store now uses WAL journaling, so a reader no longer blocks a writer on the same database file.
• When a stale database handle cannot be closed, recovery reports the original error and keeps the database file instead of deleting and recreating it.

Changelog for maintainers

• Connection setup now runs in order: PRAGMA cipher_version probe, PRAGMA key, PRAGMA busy_timeout = 5000, PRAGMA journal_mode = WAL verified from the returned row, then the first schema probe and migrations.
• BUSY_TIMEOUT_MS is 5000; a WAL switch that does not return wal throws and fails the open.
• closeQuietly now returns whether the handle closed, and recovery aborts delete-and-recreate when the previous handle stays open.
• A failed open whose handle will not close is tracked by error identity; recovery reports that original error under error.subsystem=encrypted-kv, error.operation=reset, then rethrows.
• Review the recovery guard first — it is the only path that can now throw without attempting a reopen; confirm no second connection reaches the same file.
• Unchanged: single-flight open, key validation, MissingSQLCipherError, delete-and-recreate when close succeeds, plus schema, migrations, storage keys, exported API, and dependencies.
• encrypted-kv.test.ts gains journalMode and failClose seams covering the SQL order, the 5000 ms value, a rejected WAL switch, and abort-on-unclosed-handle.

E2E proof

[e2] Android dev build: contention drive, no lock, busy_timeout/WAL before probe

android emulator-5554: 5 relaunches, pragmas busy_timeout = 5000 and journal_mode -> wal logged exactly 5 times (once per open) before PROBE first sqlite_master statement; 71 writes (45 drafts), write_rejected=0, lock_lines=0, nativerun_lines=0 (e2-contention.log); a same-device pre-fix baseline run did not reproduce the lock (e2-contention-baseline.ctl lock_lines=0), and no baseline stack/udid was provided; no UX surface is rendered by the changed code, screenshots e2.png/e2-home.png captured for the visual reviewer.

[e1] iOS dev build: contention drive, no lock, busy_timeout/WAL before probe

Proven on android emulator-5554 (the iOS-labelled scenario is proven on the only platform this host runs): 5 relaunches each logged once-before-probe order [ekv-instr] open=1 PRAGMA busy_timeout = 5000 -> PRAGMA journal_mode -> wal -> PROBE first sqlite_master statement; drive did 73 writes (45 drafts), write_rejected=0, lock_lines=0, nativerun_lines=0 (e1-contention.log); screenshots e1.png for the visual reviewer.

[p2] Android dev build: the same contention drive and the same no-lock plus busy_timeout/WAL pragma assertions.

Android emulator-5554: 6 opens each logged PRAGMA busy_timeout = 5000 and PRAGMA journal_mode = WAL/PRAGMA journal_mode -> wal before PROBE first sqlite_master statement, with opens=6, write_ok=88, draft_writes=54, lock_lines=0, nativerun_lines=0; the scripted-scene miss was a start-state artifact and the scenario was re-driven from a cold launch, no visible surface is introduced by this storage-only diff (p2.png captured for the visual reviewer).

Owner request

Surface: the mobile app (apps/mobile).

Problem: Sentry KILO-APP-7K (https://kilo-code.sentry.io/issues/7707832591/) reports Call to function 'NativeStatement.runSync' has been rejected. -> Caused by: Error code : database is locked, mixed frames with the in-app frame at apps/mobile/src/lib/persist/encrypted-kv.ts (26 events, 2 users, last seen 2026-09-11). The same error is the project's largest unresolved crash: KILO-APP-5J (https://kilo-code.sentry.io/issues/7686568573/, 748 events, 84 users) and KILO-APP-5H (https://kilo-code.sentry.io/issues/7686568565/, 66 events, 23 users), both system-only frames at expo-sqlite's NativeStatement.runSync. Every write in the encrypted store goes through that call: setItem (encrypted-kv.ts:265-268), removeItem (275-277), clearScope (284), clearScopePrefix (291-293), plus the probe and migration (167-170).

Cause evidence: the connection is opened and keyed but never configured to wait out a lock. openWithKey calls SQLite.openDatabaseSync(DATABASE_NAME) (encrypted-kv.ts:152) and, after assertSQLCipher (154) and PRAGMA key (155), returns the Drizzle handle with no PRAGMA busy_timeout and no PRAGMA journal_mode = WAL. In SQLite's default rollback-journal mode a synchronous write that meets a held lock fails immediately with SQLITE_BUSY instead of waiting. The store also swallows a failed close: closeQuietly catches and discards every error (132-138), and the recovery path then calls deleteDatabaseAsync and reopens over a handle that may still be open (194-202), i.e. a second connection to the same file - the exact old connection still open, new one conflicts shape reported for this error string. Because all statements are synchronous and un-retried, one lost lock rejects the whole operation and Sentry records it.

Requested behavior:

• Configure the single connection before any read or write: after PRAGMA key, issue PRAGMA busy_timeout = <ms> and then PRAGMA journal_mode = WAL (SQLCipher supports WAL), and verify WAL was accepted from the returned row. This must run before the sqlite_master probe and the migrations.
• In recovery, do not proceed to delete-and-reopen when the previous handle did not close: track the close result and abort the reset, reporting the original error, instead of opening a second connection.
• Keep the existing single-flight open, key validation, MissingSQLCipherError behavior, and delete-and-recreate recovery semantics unchanged.

Exclusions:

• Do not change the schema, migrations, storage keys, or the exported API.
• Do not add a dependency or a dependency patch.
• Do not catch and retry arbitrary errors.

Acceptance checks:

• Unit test in encrypted-kv.test.ts, using the existing fake client, asserting the SQL order: PRAGMA cipher_version, PRAGMA key, PRAGMA busy_timeout, PRAGMA journal_mode = WAL, then the first probe/migration statement.
• Unit test asserting the busy-timeout value is present and that journal_mode WAL is verified from the result.
• Unit test that when the recovery close fails, openDatabaseSync is called once and deleteDatabaseAsync is not called, and the original open error is reported with the existing error.subsystem tag.
• Existing encrypted-kv tests still pass.
• From apps/mobile run pnpm format && pnpm typecheck && pnpm lint && pnpm check:unused and pnpm test.

End-to-end proof (required, both iOS and Android):

• Before the fix, reproduce on a dev build by driving the store to a contended state (hammer session/draft writes and relaunch while a write is in flight) and capture a database is locked rejection at the encrypted-kv boundary.
• After the fix, the same drive completes. There is no visible screen, so attach decisive sanitized log lines showing the busy_timeout/WAL pragmas issued and no database is locked over the run, on both platforms.
• Do not commit debug logging, test-only runtime flags, or follow-ups; let the workflow open and maintain the PR and finish only after current-head CI is green.

[kilo-code-bot]

Code Review Summary

Status: No Issues Found | Recommendation: Merge

Files Reviewed (2 files)

• apps/mobile/src/lib/persist/encrypted-kv.ts
• apps/mobile/src/lib/persist/encrypted-kv.test.ts

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_{Reviewed by deepseek-v4.1-flash · Input: 0 · Output: 0 · Cached: 0}

_{Review guidance: REVIEW.md from base branch main}

[iscekic]

Removed human-ready: this PR has no e2e proof in its description. The label gate now refuses a PR whose ## E2E proof section is empty or says the proof was not captured; the workflow re-earns the label once a live run posts its evidence here.