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@KPMP

KPMP: Kidney Precision Medicine Project

KPMP: NIH/NIDDK-supported kidney precision medicine project (http://www.kpmp.org)

Welcome to the KPMP (Kidney Precision Medicine Project) Github

You can learn more about the project at KPMP.org.

This is the public repository of all of the projects that the University of Michigan software team have built to support KPMP. Additionally, there are a number of repositories here that are associated with published papers.

Notes

Each repository uses a codename followed by a dash and typically either web or data. The '-web' repsitories contain the front-end code for the application, whereas the '-data' repositories contain the service-layer code for the application.

heavens-docker contains most of the docker-container yaml files for our applications at the moment. It also contains some shared Docker containers that are used across multiple applications.

There are a number of other repositories that do not use codenames, these are typically a little more self-explanatory. Additionally, we have added topics to many of the repositories to make it easier to find their related repos.

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  1. orion-data orion-data Public

    Service layer for the data lake upload tool for KPMP

    Java 3 2

  2. heavens-docker heavens-docker Public

    Repository for all of the KPMP docker containers and docker-compose scripts

    Shell 2

  3. orion-web orion-web Public

    UI layer for the data lake uploader for KPMP

    JavaScript 2 3

  4. pegasus-data pegasus-data Public

    Repository for the Atlas Explorer Tool service layer

    Java

  5. pegasus-web pegasus-web Public

    Repository for the Atlas Explorer tool

    JavaScript

  6. hydra-web hydra-web Public

    This is the front-end code for the KPMP data repository.

    JavaScript 1

Repositories

Showing 10 of 47 repositories
  • hubble-web Public

    Contains the KPMP Atlas Spatial Viewer

    KPMP/hubble-web’s past year of commit activity
    JavaScript 0 0 0 1 Updated Aug 26, 2024
  • wsi-worker Public

    A containerized worker to convert WSI slides in SVS format to DZI

    KPMP/wsi-worker’s past year of commit activity
    Shell 2 1 0 0 Updated Aug 23, 2024
  • delphinus-data Public

    Service layer for the Digital Pathology Repository for the Kidney Precision Medicine Project.

    KPMP/delphinus-data’s past year of commit activity
    Java 1 1 0 6 Updated Aug 22, 2024
  • libra-data Public

    Tools supporting the Data Manager Dashboard (DMD)

    KPMP/libra-data’s past year of commit activity
    Python 0 0 0 0 Updated Aug 19, 2024
  • redcap-omop-etl Public

    ETL scripts to transform REDCap data into the OMOP CDM

    KPMP/redcap-omop-etl’s past year of commit activity
    Python 3 0 0 0 Updated Aug 13, 2024
  • hydra-web Public

    This is the front-end code for the KPMP data repository.

    KPMP/hydra-web’s past year of commit activity
    JavaScript 1 0 0 0 Updated Aug 12, 2024
  • atlas-file-service Public

    Service that provides files for the KPMP Atlas

    KPMP/atlas-file-service’s past year of commit activity
    Python 0 0 0 0 Updated Aug 5, 2024
  • hydra-data Public

    Gives us an endpoint to get the data back to load into ES for the KPMP data repository

    KPMP/hydra-data’s past year of commit activity
    Java 1 0 0 0 Updated Aug 5, 2024
  • heavens-docker Public

    Repository for all of the KPMP docker containers and docker-compose scripts

    KPMP/heavens-docker’s past year of commit activity
    Shell 2 0 0 0 Updated Aug 1, 2024
  • delphinus-web Public

    This project is the web front-end for the Digital Pathology Repository for the Kidney Precision Medicine Project.

    KPMP/delphinus-web’s past year of commit activity
    JavaScript 1 1 0 6 Updated Jul 30, 2024

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