Load not defined on HDF5 file

[lstagner]

This should work right or am I doing something wrong? Error occurs on master FileIO and master HDF5

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julia> using HDF5

julia> f = h5open("test.h5","w")
HDF5 data file: test.h5

julia> f["a"] = 2
2

julia> close(f)

julia> using FileIO

julia> a = load("test.h5")
Error encountered while loading "test.h5".
Fatal error:
ERROR: UndefVarError: load not defined
Stacktrace:
 [1] getproperty at ./sysimg.jl:13 [inlined]
 [2] #load#27(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::Function, ::File{DataFormat{:HDF5}}) at /home/lstagner/.julia/packages/FileIO/kflOT/src/loadsave.jl:185
 [3] load(::File{DataFormat{:HDF5}}) at /home/lstagner/.julia/packages/FileIO/kflOT/src/loadsave.jl:172
 [4] #load#13(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::Function, ::String) at /home/lstagner/.julia/packages/FileIO/kflOT/src/loadsave.jl:118
 [5] load(::String) at /home/lstagner/.julia/packages/FileIO/kflOT/src/loadsave.jl:118
 [6] top-level scope at none:0

julia> query("test.h5")
File{DataFormat{:HDF5}}("test.h5")

[samusz]

Reproduced on julia 1.5

'julia> A = collect(reshape(1:120, 15, 8))
15×8 Array{Int64,2}:
1 16 31 46 61 76 91 106
2 17 32 47 62 77 92 107
3 18 33 48 63 78 93 108
4 19 34 49 64 79 94 109
5 20 35 50 65 80 95 110
6 21 36 51 66 81 96 111
7 22 37 52 67 82 97 112
8 23 38 53 68 83 98 113
9 24 39 54 69 84 99 114
10 25 40 55 70 85 100 115
11 26 41 56 71 86 101 116
12 27 42 57 72 87 102 117
13 28 43 58 73 88 103 118
14 29 44 59 74 89 104 119
15 30 45 60 75 90 105 120

julia> h5write("/tmp/test2.h5", "mygroup2/A", A)

julia> data = h5read("/tmp/test2.h5", "mygroup2/A", (2:3:15, 3:5))
5×3 Array{Int64,2}:
32 47 62
35 50 65
38 53 68
41 56 71
44 59 74julia> B = FileIO.load("/tmp/test2.h5")
Error encountered while loading "/tmp/test2.h5".

Fatal error:
ERROR: UndefVarError: load not defined
Stacktrace:
[1] handle_error(::UndefVarError, ::File{DataFormat{:HDF5}}) at /Users/samusz/.julia/packages/FileIO/DzfYr/src/error_handling.jl:82
[2] handle_exceptions(::Array{Any,1}, ::String) at /Users/samusz/.julia/packages/FileIO/DzfYr/src/error_handling.jl:77
[3] load(::Formatted; options::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /Users/samusz/.julia/packages/FileIO/DzfYr/src/loadsave.jl:189
[4] load at /Users/samusz/.julia/packages/FileIO/DzfYr/src/loadsave.jl:166 [inlined]
[5] #load#13 at /Users/samusz/.julia/packages/FileIO/DzfYr/src/loadsave.jl:118 [inlined]
[6] load(::String) at /Users/samusz/.julia/packages/FileIO/DzfYr/src/loadsave.jl:118
[7] top-level scope at REPL[109]:1`

[lhupe]

I just noticed the same problem. I think the issue is that HDF5 just doesn't implement the FileIO API functions (JuliaIO/HDF5.jl#278).

[timholy]

Seems to be coming in JuliaIO/HDF5.jl#782

[musm]

Fixed, although not on a tagged release just yet.