Update shell-based CI scripts for unstructured waves

[WalterKolczynski-NOAA]

Description

Updates the shell-based CI scripts to build with the new -w option.

The GEFS test is temporarily disabled pending switch to the Jenkins system and multi-build capabililty in the CI system.

Type of change

• Maintenance (code refactor, clean-up, new CI test, etc.)

Change characteristics

• Is this a breaking change (a change in existing functionality)? YES
• Does this change require a documentation update? NO

How has this been tested?

Checklist

• Any dependent changes have been merged and published
• My code follows the style guidelines of this project
• I have performed a self-review of my own code
• I have commented my code, particularly in hard-to-understand areas
• My changes generate no new warnings
• New and existing tests pass with my changes
• I have made corresponding changes to the documentation if necessary