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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

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  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 81 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 47 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 34 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 27 3

  6. BigStitcher-Spark BigStitcher-Spark Public

    Running compute-intense parts of BigStitcher distributed

    Java 25 13

Repositories

Showing 10 of 275 repositories
  • BigStitcher-Spark Public

    Running compute-intense parts of BigStitcher distributed

    JaneliaSciComp/BigStitcher-Spark’s past year of commit activity
    Java 25 BSD-2-Clause 13 15 0 Updated Mar 30, 2025
  • jacs-cm Public

    JACS Configuration Management

    JaneliaSciComp/jacs-cm’s past year of commit activity
    XSLT 8 3 17 3 Updated Mar 29, 2025
  • jacs-compute Public

    JAnelia Compute Services (JACS)

    JaneliaSciComp/jacs-compute’s past year of commit activity
    Java 1 BSD-3-Clause 0 0 0 Updated Mar 29, 2025
  • jacs-storage Public

    JADE file storage services

    JaneliaSciComp/jacs-storage’s past year of commit activity
    Java 0 BSD-3-Clause 0 0 1 Updated Mar 29, 2025
  • tmt Public

    A toolbox of Matlab functions useful for data analysis, especially of electrophysiology data.

    JaneliaSciComp/tmt’s past year of commit activity
    MATLAB 3 1 0 0 Updated Mar 28, 2025
  • repp Public Forked from Lattice-Automation/repp

    Repository-based plasmid design

    JaneliaSciComp/repp’s past year of commit activity
    Go 0 GPL-2.0 4 0 0 Updated Mar 28, 2025
  • jacs-model Public

    JACS Domain Model and DAOs

    JaneliaSciComp/jacs-model’s past year of commit activity
    Java 1 BSD-3-Clause 0 0 0 Updated Mar 28, 2025
  • hortacloud Public

    HortaCloud - 3D annotation platform for large microscopy data

    JaneliaSciComp/hortacloud’s past year of commit activity
    JavaScript 10 BSD-3-Clause 1 47 (1 issue needs help) 0 Updated Mar 28, 2025
  • fileglancer-central Public

    Central metadata server for Fileglancer deployments

    JaneliaSciComp/fileglancer-central’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 1 Updated Mar 28, 2025
  • SongExplorer Public

    deep learning for acoustic signals

    JaneliaSciComp/SongExplorer’s past year of commit activity
    Python 24 BSD-3-Clause 6 5 1 Updated Mar 28, 2025
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