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Integrate UniProt Accession or Mnemomic -> NCBI Gene ID mapping #120

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khituras opened this issue May 19, 2020 · 2 comments
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Integrate UniProt Accession or Mnemomic -> NCBI Gene ID mapping #120

khituras opened this issue May 19, 2020 · 2 comments
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0.2

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With optional resolution to orthologous clusters.
@khituras khituras added this to the 0.2 milestone May 19, 2020
@khituras khituras self-assigned this May 19, 2020
@khituras khituras mentioned this issue May 19, 2020
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Dropped because we don't have time for this. Just use NCBI Gene IDs or symbols.

@khituras khituras closed this as not planned Won't fix, can't repro, duplicate, stale Oct 27, 2022
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khituras commented Dec 9, 2022

I was unreasonable and added it.

@khituras khituras reopened this Dec 9, 2022
khituras added a commit that referenced this issue Dec 9, 2022
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Add ID mappings from UniProt, HGNC, Ensembl and GO. Resolves #119, #120…
5775070 
…, #186, #187, #117.

All tests are working. The index contains NCBI gene IDs and the corresponding concept IDs (Neo4j JULIE Lab concept database [at]id[0-9]+ identifiers) and concept IDs for FamPlex, HGNC Group IDs and GO IDs. UniProt, HGNC and Ensembl are just mapped to gene IDs before searching.
@khituras khituras closed this as completed Feb 1, 2023
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