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Merged
rmclaren merged 75 commits into from
Jun 7, 2022
Merged

Feature/query cxx nick e adpsfc #904

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a412b3c
Merge branch 'develop' into feature/query_cxx
nicholasesposito Apr 6, 2022
fe6ec8c
Merge branch 'feature/query_cxx' of https://github.com/JCSDA-internal…
nicholasesposito Apr 8, 2022
a79d7ee
adpsfc prepbufr and bufr
nicholasesposito Apr 8, 2022
641e8c3
Merge branch 'develop' into feature/query_cxx
nicholasesposito Apr 8, 2022
370c5fd
Merge branch 'feature/query_cxx' into feature/query_cxx_NickE_adpsfc
nicholasesposito Apr 8, 2022
1a68c4b
Merge branch 'feature/query_cxx' of https://github.com/JCSDA-internal…
nicholasesposito Apr 12, 2022
6bdac1b
Merge branch 'feature/query_cxx' into feature/query_cxx_NickE_adpsfc
nicholasesposito Apr 12, 2022
baf1c6c
recommended changes
nicholasesposito Apr 12, 2022
2866553
recommended updates 2 (* and deg)
nicholasesposito Apr 13, 2022
e7172d8
CMakelists.txt update
nicholasesposito Apr 13, 2022
5d534b2
Merge branch 'feature/query_cxx' of https://github.com/JCSDA-internal…
nicholasesposito Apr 13, 2022
3562217
Merge branch 'feature/query_cxx' into feature/query_cxx_NickE_adpsfc
nicholasesposito Apr 13, 2022
a2b1e0a
update CMakeLists.txt
nicholasesposito Apr 13, 2022
66a7fb9
adpsfc prepbufr recommended changes
nicholasesposito Apr 14, 2022
d45c019
remove nc, add full adpsfcyaml
nicholasesposito Apr 18, 2022
bda43db
adpsfc updates, plus CMakelists
nicholasesposito Apr 19, 2022
a3e4977
remove CLTP and VSSO
nicholasesposito Apr 19, 2022
89acb26
Merge branch 'feature/query_cxx' into feature/query_cxx_NickE_adpsfc
nicholasesposito Apr 22, 2022
3a127a0
decrease number of variables
nicholasesposito Apr 25, 2022
5f89316
Merge branch 'feature/query_cxx' into feature/query_cxx_NickE_adpsfc
nicholasesposito Apr 25, 2022
9288553
update output
nicholasesposito Apr 25, 2022
3521fc5
heightOfStation -> stationElevation
nicholasesposito Apr 27, 2022
7d0f728
get rid of oceanographic
nicholasesposito Apr 29, 2022
b61674d
update heightofbaseofcloud description
nicholasesposito Apr 29, 2022
89c85c8
Merge branch 'feature/query_cxx' into feature/query_cxx_NickE_adpsfc
nicholasesposito Apr 29, 2022
303b38a
update with correct files
nicholasesposito Apr 29, 2022
943f1ab
updates to HOCB CLAM VSSO
nicholasesposito May 2, 2022
8bae6a0
update thinned, has all subsets
nicholasesposito May 4, 2022
06a1825
Merge branch 'feature/query_cxx' into feature/query_cxx_NickE_adpsfc
emilyhcliu May 6, 2022
a64d8b3
Merge branch 'feature/query_cxx' into feature/query_cxx_NickE_adpsfc
rmclaren May 17, 2022
7647d00
Merge branch 'develop' into feature/query_cxx_NickE_adpsfc
rmclaren May 18, 2022
82193bc
Merge branch 'feature/query_cxx' into feature/query_cxx_NickE_adpsfc
rmclaren May 18, 2022
e6d4989
Fixed the unit tests
rmclaren May 18, 2022
01cd894
reportid -> SID, CLAM[1] is CLAM, pW@Obs, percent ->1
nicholasesposito May 19, 2022
b537d60
update output
nicholasesposito May 19, 2022
744faba
new output from updated bufr2ioda.x
nicholasesposito May 19, 2022
d814f13
bufr: HSMSL+SELV=stationElevation, PB: percent->1
nicholasesposito May 20, 2022
8b65e2c
get rid of units:"" and unitless.
nicholasesposito May 20, 2022
469d95d
Merge branch 'feature/query_cxx' into feature/query_cxx_NickE_adpsfc
nicholasesposito May 23, 2022
6c79660
Merge branch 'feature/query_cxx' into feature/query_cxx_NickE_adpsfc
emilyhcliu May 24, 2022
2065c8f
Merge branch 'feature/query_cxx_NickE_adpsfc' of https://github.com/J…
nicholasesposito May 24, 2022
1f25d83
add dimensions. cloudAmountObserved. cloudCover/100
nicholasesposito May 24, 2022
dd5ac0a
moistureQM -> dewpointTemperatureQM
nicholasesposito May 24, 2022
b79cf87
cloudAmount no units
nicholasesposito May 24, 2022
d3e522d
updated bufr with new dim names
nicholasesposito May 25, 2022
50243bf
update prep. few names. add dimens
nicholasesposito May 25, 2022
37da40b
most updates for prep
nicholasesposito May 25, 2022
da1c453
No more 'Seen'. Other updates
nicholasesposito May 25, 2022
7b99e0a
delete metarsequence, Of not of
nicholasesposito May 25, 2022
51f6dd8
Merge branch 'feature/query_cxx' into feature/query_cxx_NickE_adpsfc
nicholasesposito May 25, 2022
bfb6ee0
Merge branch 'feature/query_cxx' into feature/query_cxx_NickE_adpsfc
emilyhcliu May 27, 2022
1e53ba1
Move VSSO to be with other variables related to clouds
emilyhcliu May 27, 2022
037a16b
Rearrange the order of entries in the YAML
emilyhcliu May 27, 2022
29ff286
fix spacing in the YAML
emilyhcliu May 27, 2022
0baa094
Reorder entries in YAML
emilyhcliu May 27, 2022
af2f311
fix spaceing
emilyhcliu May 27, 2022
5769f78
Rearrange entries
emilyhcliu May 27, 2022
05d8934
Modify variable names and bug fix for ADPSFC BUFR and PREPBUFR YAMLS.…
emilyhcliu May 28, 2022
e73c4d1
Update CMakelist.txt and add comments
emilyhcliu May 28, 2022
324c3f6
Remove obselete files
emilyhcliu May 28, 2022
08273ad
Modify ADPSFC test output back to original
emilyhcliu May 29, 2022
de3e13c
Modify variable names for max/min Temperatures
emilyhcliu May 29, 2022
9462fab
Add missing variables and rearranged entries.
emilyhcliu May 29, 2022
0fd2e52
Update test output for ADPSFC
emilyhcliu May 30, 2022
ed43579
Change heightOfStation to heightOfObservation
emilyhcliu May 31, 2022
e21cb9c
Update ctest output file for prepbufr adpsfc
emilyhcliu May 31, 2022
1d5e2c2
get rid of v1 adpsfc. final recommended updates
nicholasesposito May 31, 2022
0d58068
revert, keep gdas.t06z.adpsfc.tm00.bufr_d for adpsfc_snow
nicholasesposito Jun 1, 2022
9786366
re-add adpsfc_snow input bufr to CmakeLists.txt
nicholasesposito Jun 1, 2022
38f4a4a
Merge branch 'feature/query_cxx' into feature/query_cxx_NickE_adpsfc
emilyhcliu Jun 2, 2022
e2f7f07
Add the correct input test file for adpsfc snow data
emilyhcliu Jun 2, 2022
7b60e55
update prepbufr file names, CMake, yaml obsdatain and out
nicholasesposito Jun 6, 2022
fd54cdb
typo
nicholasesposito Jun 6, 2022
9d25e52
degrees_north and east -> degree_north and east
nicholasesposito Jun 6, 2022
c8c3953
delete 'adsfc' file, update with degree
nicholasesposito Jun 6, 2022
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25 changes: 19 additions & 6 deletions test/CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -146,7 +146,6 @@ if( iodaconv_bufr_ENABLED )
testinput/gdas.t12z.mtiasi.tm00.bufr_d
testinput/gdas.t18z.1bmhs.tm00.bufr_d
testinput/gdas.t00z.1bhrs4.tm00.bufr_d
testinput/gdas.t06z.adpsfc.tm00.bufr_d
testinput/gdas.t00z.sevcsr.tm00.bufr_d
testinput/gdas.t18z.satwnd_avhrr.tm00.bufr_d
testinput/bufr_read_2_dim_blocks.bufr
Expand All @@ -163,7 +162,11 @@ if( iodaconv_bufr_ENABLED )
testinput/bufr_filtering.yaml
testinput/bufr_splitting.yaml
testinput/bufr_filter_split.yaml
testinput/bufr_adpsfc.yaml
testinput/bufr_ncep_prepbufr_adpsfc.yaml
testinput/bufr_ncep_adpsfc.yaml
testinput/gdas.t12z.adpsfc.prepbufr
testinput/gdas.t06z.adpsfc.tm00.bufr_d
testinput/gdas.t12z.adpsfc.tm00.bufr_d
testinput/bufr_ncep_snow_adpsfc.yaml
testinput/bufr_read_2_dim_blocks.yaml
testinput/bufr_ncep_1bamua.yaml
Expand Down Expand Up @@ -216,7 +219,8 @@ if( iodaconv_bufr_ENABLED )
testoutput/gdas.t12z.esamua.tm00.noaa-18.nc
testoutput/gdas.t12z.1bmhs.tm00.metop-b.nc
testoutput/gdas.t12z.esmhs.tm00.noaa-19.nc
testoutput/gdas.t06z.adpsfc.tm00.nc
testoutput/gdas.t12z.adpsfc.prepbufr.nc
testoutput/gdas.t12z.adpsfc.tm00.nc
testoutput/gdas.t06z.adpsfc_snow.tm00.nc
testoutput/gdas.t00z.sevcsr.tm00.nc
testoutput/bufr_read_2_dim_blocks.nc
Expand Down Expand Up @@ -983,13 +987,22 @@ if(iodaconv_bufr_ENABLED)
gdas.t12z.esmhs.tm00.noaa-19.nc ${IODA_CONV_COMP_TOL_ZERO}
DEPENDS bufr2ioda.x )

ecbuild_add_test( TARGET test_iodaconv_bufr_adpsfc2ioda
ecbuild_add_test( TARGET test_iodaconv_bufr_ncep_adpsfc2ioda
TYPE SCRIPT
COMMAND bash
ARGS ${CMAKE_BINARY_DIR}/bin/iodaconv_comp.sh
netcdf
"${CMAKE_BINARY_DIR}/bin/bufr2ioda.x testinput/bufr_ncep_adpsfc.yaml"
gdas.t12z.adpsfc.tm00.nc ${IODA_CONV_COMP_TOL_ZERO}
DEPENDS bufr2ioda.x )

ecbuild_add_test( TARGET test_iodaconv_prepbufr_ncep_adpsfc2ioda
TYPE SCRIPT
COMMAND bash
ARGS ${CMAKE_BINARY_DIR}/bin/iodaconv_comp.sh
netcdf
"${CMAKE_BINARY_DIR}/bin/bufr2ioda.x testinput/bufr_adpsfc.yaml"
gdas.t06z.adpsfc.tm00.nc ${IODA_CONV_COMP_TOL_ZERO}
"${CMAKE_BINARY_DIR}/bin/bufr2ioda.x testinput/bufr_ncep_prepbufr_adpsfc.yaml"
gdas.t12z.adpsfc.prepbufr.nc ${IODA_CONV_COMP_TOL_ZERO}
DEPENDS bufr2ioda.x )

ecbuild_add_test( TARGET test_iodaconv_bufr_ncep_snowadpsfc2ioda
Expand Down
130 changes: 0 additions & 130 deletions test/testinput/bufr_adpsfc.yaml
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