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Add variable for GNSS bending angle data, save orginal GSI QC flags a… #1038

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Merged
PatNichols merged 6 commits into from
Sep 14, 2022
Merged

Add variable for GNSS bending angle data, save orginal GSI QC flags a… #1038

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69d45fe
Add variable for GNSS bending angle data, save orginal GSI QC flags a…
gmao-jjin3 Sep 1, 2022
0fc5e18
Removed the change of 'GsiEffectiveQC'.
gmao-jjin3 Sep 3, 2022
50fd58f
Trigger a test.
gmao-jjin3 Sep 6, 2022
6fd157c
Fixed coding norms.
gmao-jjin3 Sep 6, 2022
1eadd77
Fixed coding norms. Again
gmao-jjin3 Sep 7, 2022
352d04a
Merge branch 'develop' into feature/jjin_gsi_ncdiag_gps
danholdaway Sep 12, 2022
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29 changes: 25 additions & 4 deletions src/gsi-ncdiag/gsi_ncdiag.py
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Original file line number Diff line number Diff line change
Expand Up @@ -84,6 +84,16 @@
all_LocKeyList = {
'Station_ID': ('station_id', 'string'),
'Time': ('datetime', 'string'),
'time': ('time', 'string'),
'ascending_flag': ('ascending_flag', 'string'),
'earth_radius_of_curvature': ('earth_radius_of_curvature', 'string'),
'reference_sat_id': ('reference_sat_id', 'string'),
'occulting_sat_id': ('occulting_sat_id', 'string'),
'record_number': ('record_number', 'string'),
'geoid_height_above_reference_ellipsoid': ('geoid_height_above_reference_ellipsoid', 'string'),
'gnss_sat_class': ('gnss_sat_class', 'string'),
'impact_height': ('impact_height', 'string'),
'impact_parameter': ('impact_parameter', 'string'),
'Latitude': ('latitude', 'float'),
'Longitude': ('longitude', 'float'),
'Station_Elevation': ('station_elevation', 'float'),
Expand Down Expand Up @@ -115,6 +125,7 @@
'SCCF_chan_wavelen': ('channel_wavelength', 'float'),
'QI_with_FC': ('satwind_quality_ind_with_fc', 'float'),
'QI_without_FC': ('satwind_quality_ind_no_fc', 'float'),
'Data_Vertical_Velocity': ('data_vertical_velocity', 'float'),
'LaunchTime': ('LaunchTime', 'float'),
}

Expand Down Expand Up @@ -304,6 +315,7 @@
'specific_humidity': 'specific_humidity',
'northward_wind': 'northward_wind',
'eastward_wind': 'eastward_wind',
'geopotential_height_levels': 'geopotential_height_levels',
'geopotential_height': 'geopotential_height',
'geometric_height': 'geometric_height',
'height': 'height_above_mean_sea_level',
Expand All @@ -315,6 +327,7 @@
'surface_roughness': 'surface_roughness_length',
'surface_height': 'surface_geopotential_height',
'surface_geopotential_height': 'surface_geopotential_height',
'surface_altitude': 'surface_altitude',
'surface_geometric_height': 'surface_geometric_height',
'landmask': 'land_area_fraction',
'air_temperature': 'air_temperature',
Expand Down Expand Up @@ -349,7 +362,7 @@
'Lai': 'leaf_area_index',
'Soil_Moisture': 'volume_fraction_of_condensed_water_in_soil',
'Soil_Temperature': 'soil_temperature',
'Land_Type_Index': 'land_type_index',
'Land_Type_Index': 'land_type_index_NPOESS',
'Vegetation_Type': 'vegetation_type_index',
'Soil_Type': 'soil_type',
'Snow_Depth': 'surface_snow_thickness',
Expand Down Expand Up @@ -414,12 +427,18 @@
'northward_wind': 'm s-1',
'eastward_wind': 'm s-1',
'geopotential_height': 'm',
'geopotential_height_levels': 'm',
'height_above_mean_sea_level': 'm',
'surface_pressure': 'Pa',
'sea_surface_temperature': 'K',
'surface_temperature': 'K',
'surface_roughness_length': 'm',
'surface_geopotential_height': 'm',
'surface_altitude': 'm',
'geoid_height_above_reference_ellipsoid': 'Meters',
'earth_radius_of_curvature': 'Meters',
'impact_height': 'Meters',
'impact_parameter': 'Meters',
'land_area_fraction': '1',
'air_temperature': 'K',
'air_pressure': 'Pa',
Expand Down Expand Up @@ -451,7 +470,7 @@
'leaf_area_index': '1',
'volume_fraction_of_condensed_water_in_soil': '1',
'soil_temperature': 'K',
'land_type_index': '1',
'land_type_index_NPOESS': '1',
'vegetation_type_index': '1',
'soil_type': '1',
'surface_snow_thickness': 'm',
Expand Down Expand Up @@ -497,6 +516,7 @@
'clw_retrieved_from_background': 'kg/m/m',
'scat_retrieved_from_observation': '1',
'LaunchTime': 'hours',
'bending_angle': 'radians',
}

# @TestReference
Expand Down Expand Up @@ -684,7 +704,8 @@ def toGeovals(self, OutDir, clobber=True):
if (len(var.dimensions) == 1):
dims = ("nlocs",)
else:
if vname == "atmosphere_pressure_coordinate_interface":
if (vname == "atmosphere_pressure_coordinate_interface") or (
vname == "geopotential_height_levels"):
dims = ("nlocs", "ninterfaces")
else:
dims = ("nlocs", "nlevs")
Expand Down Expand Up @@ -850,7 +871,7 @@ def toIODAobs(self, OutDir, clobber=True, platforms=None):
tmp = self.var(lvar)[idx]
StationIDs = [bytes((b''.join(tmp[a])).decode('iso-8859-1').encode('utf8')) for a in range(len(tmp))]
outdata[(loc_mdata_name, 'MetaData')] = np.array(StationIDs, dtype=object)
elif lvar == 'Time': # need to process into time stamp strings #"%Y-%m-%dT%H:%M:%SZ"
elif lvar == 'Time' or lvar == 'time': # need to process into time stamp strings #"%Y-%m-%dT%H:%M:%SZ"
tmp = self.var(lvar)[idx]
obstimes = [self.validtime + dt.timedelta(hours=float(tmp[a])) for a in range(len(tmp))]
obstimes = [a.strftime("%Y-%m-%dT%H:%M:%SZ") for a in obstimes]
Expand Down