ENH: Update to ITK 5.3RC3

.github/workflows/build-test-package.yml

@@ -8,26 +8,26 @@ jobs:
     strategy:
       max-parallel: 3
       matrix:
-        os: [ubuntu-18.04, windows-2019, macos-10.15]
+        os: [ubuntu-20.04, windows-2019, macos-10.15]
         include:
-          - os: ubuntu-18.04
+          - os: ubuntu-20.04
             c-compiler: "gcc"
             cxx-compiler: "g++"
-            itk-git-tag: "v5.2.0"
+            itk-git-tag: "v5.3rc03"
             cmake-build-type: "MinSizeRel"
           - os: windows-2019
             c-compiler: "cl.exe"
             cxx-compiler: "cl.exe"
-            itk-git-tag: "v5.2.0"
+            itk-git-tag: "v5.3rc03"
             cmake-build-type: "Release"
           - os: macos-10.15
             c-compiler: "clang"
             cxx-compiler: "clang++"
-            itk-git-tag: "v5.2.0"
+            itk-git-tag: "v5.3rc03"
             cmake-build-type: "MinSizeRel"
 
     steps:
-    - uses: actions/checkout@v1
+    - uses: actions/checkout@v2
 
     - name: Set up Python 3.8
       uses: actions/setup-python@v2
@@ -135,9 +135,9 @@ jobs:
     strategy:
       max-parallel: 2
       matrix:
-        python-version: [36, 37, 38, 39]
+        python-version: [37, 38, 39, 310]
         include:
-          - itk-python-git-tag: "v5.2.0"
+          - itk-python-git-tag: "v5.3rc03"
 
     steps:
     - uses: actions/checkout@v2
@@ -173,7 +173,7 @@ jobs:
       max-parallel: 2
       matrix:
         include:
-          - itk-python-git-tag: "v5.2.0"
+          - itk-python-git-tag: "v5.3rc03"
 
     steps:
     - uses: actions/checkout@v2
@@ -207,9 +207,9 @@ jobs:
     strategy:
       max-parallel: 2
       matrix:
-        python-version-minor: [6, 7, 8, 9]
+        python-version-minor: [7, 8, 9, 10]
         include:
-          - itk-python-git-tag: "v5.2.0"
+          - itk-python-git-tag: "v5.3rc03"
 
     steps:
     - name: Get specific version of CMake, Ninja
@@ -253,77 +253,12 @@ jobs:
         name: WindowsWheel3.${{ matrix.python-version-minor }}
         path: ../../im/dist
 
-  build-linux-opencl-python-packages:
-    runs-on: ubuntu-18.04
-    strategy:
-      max-parallel: 2
-      matrix:
-        python-version: [36, 37, 38, 39]
-        include:
-          - itk-python-git-tag: "v5.2.0"
-
-    steps:
-    - uses: actions/checkout@v2
-
-    - name: 'Free up disk space'
-      run: |
-        # Workaround for https://github.com/actions/virtual-environments/issues/709
-        df -h
-        sudo apt-get clean
-        sudo rm -rf "/usr/local/share/boost"
-        sudo rm -rf "$AGENT_TOOLSDIRECTORY"
-        df -h
-
-    - name: 'Build 🐍 Python 📦 package'
-      run: |
-        export ITK_PACKAGE_VERSION=${{ matrix.itk-python-git-tag }}
-        ./wrapping/dockcross-manylinux-download-cache.sh
-        ./wrapping/dockcross-manylinux-build-module-wheels-opencl.sh cp${{ matrix.python-version }}
-
-    - name: Publish Python package as GitHub Artifact
-      uses: actions/upload-artifact@v1
-      with:
-        name: LinuxOpenCLWheel${{ matrix.python-version }}
-        path: dist
-
-  build-macos-opencl-python-packages:
-    runs-on: macos-10.15
-    strategy:
-      max-parallel: 2
-      matrix:
-        include:
-          - itk-python-git-tag: "v5.2.0"
-
-    steps:
-    - uses: actions/checkout@v2
-
-    - name: Get specific version of CMake, Ninja
-      uses: lukka/get-cmake@v3.18.3
-
-    - name: 'Fetch build script'
-      run: |
-        curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITKPythonPackage/master/scripts/macpython-download-cache-and-build-module-wheels.sh -O
-        chmod u+x macpython-download-cache-and-build-module-wheels.sh
-
-    - name: 'Build 🐍 Python 📦 package'
-      run: |
-        export ITK_PACKAGE_VERSION=${{ matrix.itk-python-git-tag }}
-        export MACOSX_DEPLOYMENT_TARGET=10.9
-        export ELASTIX_USE_OPENCL=1
-        ./macpython-download-cache-and-build-module-wheels.sh
-
-    - name: Publish Python package as GitHub Artifact
-      uses: actions/upload-artifact@v1
-      with:
-        name: MacOSOpenCLWheels
-        path: dist
-
   publish-python-packages-to-pypi:
     needs:
       - build-linux-python-packages
       - build-macos-python-packages
       - build-windows-python-packages
-    runs-on: ubuntu-18.04
+    runs-on: ubuntu-20.04
 
     steps:
     - name: Download Python Packages
@@ -345,30 +280,3 @@ jobs:
       with:
         user: __token__
         password: ${{ secrets.pypi_password }}
-
-  publish-opencl-python-packages-to-pypi:
-    needs:
-      - build-linux-opencl-python-packages
-      - build-macos-opencl-python-packages
-    runs-on: ubuntu-18.04
-
-    steps:
-    - name: Download Python Packages
-      uses: actions/download-artifact@v2
-
-    - name: Prepare packages for upload
-      run: |
-        ls -R
-        for d in */; do
-          mv ${d}/*.whl .
-        done
-        mkdir dist
-        mv itk_elastix_opencl-*.whl dist/
-        ls dist
-
-    - name: Publish 🐍 Python 📦 package to PyPI
-      if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags')
-      uses: pypa/gh-action-pypi-publish@master
-      with:
-        user: __token__
-        password: ${{ secrets.opencl_pypi_password }}

CMakeLists.txt

@@ -1,4 +1,4 @@
-cmake_minimum_required(VERSION 3.10.2)
+cmake_minimum_required(VERSION 3.16.3)
 project(Elastix)
 
 # To ease enablement with Python packaging
@@ -40,7 +40,7 @@ set(_itk_build_testing ${BUILD_TESTING})
 set(_itk_build_shared ${BUILD_SHARED_LIBS})
 set(BUILD_SHARED_LIBS OFF)
 set(elastix_GIT_REPOSITORY "https://github.com/SuperElastix/elastix.git")
-set(elastix_GIT_TAG "3816950f157753ad3763cfe3988f49f788eb38c2")
+set(elastix_GIT_TAG "a0cf5235691ab0e7416600ed29db5abf2ff8ffe2")
 FetchContent_Declare(
   elx
   GIT_REPOSITORY ${elastix_GIT_REPOSITORY}
@@ -80,6 +80,19 @@ set(BUILD_TESTING ${_itk_build_testing})
 set(BUILD_SHARED_LIBS ${_itk_build_shared})
 
 
+if(ITK_WRAP_PYTHON) # Python wrapping is enabled
+  get_property(multi_config GLOBAL PROPERTY GENERATOR_IS_MULTI_CONFIG)
+  if(multi_config)
+    if(NOT (CMAKE_CONFIGURATION_TYPES STREQUAL "Release"))
+      message(WARNING "Python wrapping of ITKElastix is known not to work with RelWithDebInfo configuration. Release is recommended. Your CMAKE_CONFIGURATION_TYPES: ${CMAKE_CONFIGURATION_TYPES}")
+    endif()
+  else()
+    if(NOT (CMAKE_BUILD_TYPE STREQUAL "Release"))
+      message(WARNING "Python wrapping of ITKElastix is known not to work with RelWithDebInfo configuration. Release is recommended. Your CMAKE_BUILD_TYPE: ${CMAKE_BUILD_TYPE}")
+    endif()
+  endif()
+endif()
+
 if(NOT ITK_SOURCE_DIR)
   find_package(ITK REQUIRED)
   list(APPEND CMAKE_MODULE_PATH ${ITK_CMAKE_DIR})

setup.py

@@ -18,7 +18,7 @@
 
 setup(
     name=package_name,
-    version='0.13.0',
+    version='0.14.0',
     author='Insight Software Consortium',
     author_email='itk+community@discourse.itk.org',
     packages=['itk'],
@@ -49,6 +49,6 @@
     keywords='ITK InsightToolkit',
     url=r'https://itk.org/',
     install_requires=[
-        r'itk>=5.2.0'
+        r'itk>=5.3rc3'
     ]
     )