chore: Fix incorrect early exit in Javadoc quality script #3932
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Related to #3923
I had accidentally left an early exit at the top of the script causing it to be unusable if checked out to the master branch. That's not desirable as very likely, someone first looking into #3923 will be checkout out to the master branch, and may just give up as the script ostensibly doesn't work.
This PR just moves that early exit into the appropriate place (when running the compare command).