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33 changes: 33 additions & 0 deletions h5tests/geopandas_pyogrio_arr_mean.py
Original file line number Diff line number Diff line change
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import os
import subprocess

import h5py
import numpy as np
import pandas as pd

from .h5test import H5Test, timer_decorator

try:
os.environ["USE_PYGEOS"] = "0"
import geopandas as gpd
import pyogrio
except ImportError:
completed_process = subprocess.run(
["mamba", "install", "-c", "conda-forge", "pyogrio", "--yes"]
)
import pyogrio


class GeopandasPyogrioArrMean(H5Test):
@timer_decorator
def run(self):
group = "/gt1l/heights" # not used
variable = "h_ph"
geodataframes = []
for file in self.files:
# file = "s3://nasa-cryo-scratch/h5cloud/flatgeobuf/ATL03_20230211164520_08111812_006_01.fgb"
# print(f"Loading {file} into geopandas via pyogrio")
gdf = gpd.read_file(filename=file, engine="pyogrio")
geodataframes.append(gdf[variable])
final_geodataframe: gpd.Series = pd.concat(objs=geodataframes, axis="index")
return np.mean(final_geodataframe)