USeq_9.3.5

See commit notes.

USeq_9.3.4

No bug fixes just new features including a comprehensive tool for identifying Loss of Heterozygosity events.

USeq_9.3.3

Release of new tools for somatic variant pathway analysis and Caris clinical test data processing and integration. Lots of modifications for TNRunner2 workflows. See the commit logs.

USeq_9.3.2

Major update to the TNRunner process for running T/N + RNASeq analysis. See the optimized TNRunner2 app and the updated snakemake workflows, https://github.com/HuntsmanCancerInstitute/Workflows/tree/master/Hg38RunnerWorkflows2

USeq_9.3.1

Lots of updates to tools for annotating variants for clinical interpretation and building streamlined alignment and QC workflows. See the commit logs.

USeq_9.3.0

See the commit logs.

USeq_9.2.9

See commit notes.

USeq_9.2.8

See the git commit logs.

USeq_9.2.7

See commit logs.

USeq_9.2.6

Lots of modifications to the BamPileup apps to support high depth and many bam file processing.