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Claude/tool approval all tools l mw xe - #1355

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Jan 15, 2026
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@arikalon1

@arikalon1 arikalon1 commented Jan 10, 2026 •

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Summary by CodeRabbit

  • New Features

    • Approval workflow for operations that require explicit user authorization.
    • Tools can be marked restricted and enabled via runbook/authorization; tool lists refresh when runbook state changes.
    • YAML/config support for restriction and approval rules.
    • Bash commands perform safety validation and honor user approval before execution.
  • Other

    • Interaction state is reset on empty user input to ensure fresh request state.

✏️ Tip: You can customize this high-level summary in your review settings.

claude added 3 commits January 9, 2026 21:43
This implements a comprehensive tool control system with two mechanisms:

1. Tool Approval: Requires user confirmation before executing certain tools
   - Added ApprovalRequirement class for approval check results
   - Added requires_approval() method to Tool base class (overridable)
   - Added approval_required_tools and require_approval_for_all_tools to Toolset
   - Refactored bash tool to use the new requires_approval() method

2. Tool Restriction: Limits when LLM can use certain tools
   - Added RestrictionResult class for restriction check results
   - Added restricted field to Tool class
   - Added restricted_tools list to Toolset class
   - Tools marked [RESTRICTED] require runbook authorization or explicit flag
   - Restriction is enforced via prompt guidance and execution-time checks

Key changes:
- holmes/core/tools.py: New classes and methods for approval/restriction
- holmes/core/tool_calling_llm.py: Track runbook usage for restriction checks
- holmes/plugins/toolsets/bash/bash_toolset.py: Refactored to use new API
- holmes/plugins/prompts/_general_instructions.jinja2: Added policy docs

The two mechanisms are orthogonal - a tool can be both restricted AND
require approval, providing defense in depth for dangerous operations.

Signed-off-by: Claude <noreply@anthropic.com>
Comprehensive test coverage for the new security features:

1. ApprovalRequirement and RestrictionResult classes
2. Tool-level requires_approval() method with conditional logic
3. Toolset-level approval_required_tools pattern matching
4. Toolset-level require_approval_for_all_tools flag
5. Tool-level restricted field and toolset restricted_tools patterns
6. Restriction enforcement with restricted_tools_enabled and runbook_in_use
7. [RESTRICTED] prefix in OpenAI tool format
8. Combined approval and restriction scenarios
9. Wildcard and empty pattern edge cases

All 29 tests pass and verify the security mechanisms work correctly.

Signed-off-by: Claude <noreply@anthropic.com>
Two new eval tests to verify tool restriction behavior:

1. 195_restricted_tool_blocked:
   - Tests that restricted tools are blocked without authorization
   - Configures kubernetes/logs toolset with restricted_tools: ["*"]
   - Expects error message about tool being restricted

2. 196_restricted_tool_via_runbook:
   - Tests that restricted tools work when a runbook authorizes them
   - Same restriction configuration but includes a runbook
   - After fetch_runbook is called, restricted tools become available
   - Expects successful log retrieval

Also adds 'tool-restriction' pytest marker for these tests.

Signed-off-by: Claude <noreply@anthropic.com>
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📂 Previous Runs

📜 Run @ 39b37e5 (#20939672603)

✅ Results of HolmesGPT evals

Automatically triggered by commit 39b37e5 on branch claude/tool-approval-all-tools-lMWXe

View workflow logs

Results of HolmesGPT evals

  • ask_holmes: 9/9 test cases were successful, 0 regressions
Status Test case Time Turns Tools Cost
✅ 09_crashpod 31.3s 5 12 $0.1539
✅ 101_loki_historical_logs_pod_deleted 48.0s 8 16 $0.2046
✅ 111_pod_names_contain_service 46.5s 9 19 $0.2160
✅ 12_job_crashing 42.8s 8 15 $0.1925
✅ 162_get_runbooks 50.1s 8 15 $0.2102
✅ 176_network_policy_blocking_traffic_no_runbooks 45.9s 8 15 $0.1906
✅ 24_misconfigured_pvc 32.6s 6 16 $0.1605
✅ 43_current_datetime_from_prompt 3.7s 1 — $0.0618
✅ 61_exact_match_counting 15.7s 4 5 $0.1051
Total 35.2s avg 6.3 avg 14.1 avg $1.4952

Time/Cost columns show % change vs historical average (↑slower/costlier, ↓faster/cheaper). Changes under 10% shown as ±0%.

Historical Comparison Details

Filter: excluding branch 'claude/tool-approval-all-tools-lMWXe'

Status: Success - 18 test/model combinations loaded

Experiments compared (30):

Comparison indicators:

  • ±0% — diff under 10% (within noise threshold)
  • ↑N%/↓N% — diff 10-25%
  • ↑N%/↓N% — diff over 25% (significant)
📜 Run @ 8c2ae85 (#20914115673)

✅ Results of HolmesGPT evals

Automatically triggered by commit 8c2ae85 on branch claude/tool-approval-all-tools-lMWXe

View workflow logs

Results of HolmesGPT evals

  • ask_holmes: 9/9 test cases were successful, 0 regressions
Status Test case Time Turns Tools Cost
✅ 09_crashpod 32.7s ±0% 6 13 $0.1692
✅ 101_loki_historical_logs_pod_deleted 56.9s ↓16% 8 19 $0.2406
✅ 111_pod_names_contain_service 38.7s ±0% 7 15 $0.1766
✅ 12_job_crashing 47.0s ±0% 9 17 $0.2010
✅ 162_get_runbooks 45.9s ±0% 7 18 $0.2203
✅ 176_network_policy_blocking_traffic_no_runbooks 38.9s ±0% 7 15 $0.1910
✅ 24_misconfigured_pvc 54.8s ↑47% 7 16 $0.1737
✅ 43_current_datetime_from_prompt 3.5s ±0% 1 — $0.0621
✅ 61_exact_match_counting 11.0s ±0% 3 3 $0.0860
Total 36.6s avg 6.1 avg 14.5 avg $1.5205

Time/Cost columns show % change vs historical average (↑slower/costlier, ↓faster/cheaper). Changes under 10% shown as ±0%.

Historical Comparison Details

Filter: excluding branch 'claude/tool-approval-all-tools-lMWXe'

Status: Success - 11 test/model combinations loaded

Experiments compared (30):

Comparison indicators:

  • ±0% — diff under 10% (within noise threshold)
  • ↑N%/↓N% — diff 10-25%
  • ↑N%/↓N% — diff over 25% (significant)
📜 Run @ ca92063 (#20914009605)

✅ Results of HolmesGPT evals

Automatically triggered by commit ca92063 on branch claude/tool-approval-all-tools-lMWXe

View workflow logs

Results of HolmesGPT evals

  • ask_holmes: 9/9 test cases were successful, 0 regressions
Status Test case Time Turns Tools Cost
✅ 09_crashpod 30.8s ±0% 5 12 $0.1545
✅ 101_loki_historical_logs_pod_deleted 57.4s ↓15% 9 19 $0.2348
✅ 111_pod_names_contain_service 38.8s ±0% 7 14 $0.1731
✅ 12_job_crashing 46.6s ±0% 9 18 $0.2147
✅ 162_get_runbooks 52.4s ±0% 8 18 $0.2252
✅ 176_network_policy_blocking_traffic_no_runbooks 37.0s ↓11% 6 15 $0.1745
✅ 24_misconfigured_pvc 32.5s ↓13% 6 16 $0.1606
✅ 43_current_datetime_from_prompt 3.5s ±0% 1 — $0.0621
✅ 61_exact_match_counting 10.7s ±0% 3 3 $0.0860
Total 34.4s avg 6.0 avg 14.4 avg $1.4854

Time/Cost columns show % change vs historical average (↑slower/costlier, ↓faster/cheaper). Changes under 10% shown as ±0%.

Historical Comparison Details

Filter: excluding branch 'claude/tool-approval-all-tools-lMWXe'

Status: Success - 11 test/model combinations loaded

Experiments compared (30):

Comparison indicators:

  • ±0% — diff under 10% (within noise threshold)
  • ↑N%/↓N% — diff 10-25%
  • ↑N%/↓N% — diff over 25% (significant)
📜 Run @ 75ecf75 (#20913818099)

✅ Results of HolmesGPT evals

Automatically triggered by commit 75ecf75 on branch claude/tool-approval-all-tools-lMWXe

View workflow logs

Results of HolmesGPT evals

  • ask_holmes: 9/9 test cases were successful, 0 regressions
Status Test case Time Turns Tools Cost
✅ 09_crashpod 36.7s ↑14% 6 14 $0.1777
✅ 101_loki_historical_logs_pod_deleted 41.7s ↓38% 5 10 $0.1553
✅ 111_pod_names_contain_service 42.7s ±0% 8 18 $0.1950
✅ 12_job_crashing 46.2s ±0% 9 17 $0.2016
✅ 162_get_runbooks 46.6s ±0% 7 18 $0.2151
✅ 176_network_policy_blocking_traffic_no_runbooks 37.1s ↓11% 6 13 $0.1700
✅ 24_misconfigured_pvc 38.5s ±0% 7 17 $0.1823
✅ 43_current_datetime_from_prompt 3.5s ±0% 1 — $0.0621
✅ 61_exact_match_counting 11.1s ±0% 3 3 $0.0860
Total 33.8s avg 5.8 avg 13.8 avg $1.4452

Time/Cost columns show % change vs historical average (↑slower/costlier, ↓faster/cheaper). Changes under 10% shown as ±0%.

Historical Comparison Details

Filter: excluding branch 'claude/tool-approval-all-tools-lMWXe'

Status: Success - 11 test/model combinations loaded

Experiments compared (30):

Comparison indicators:

  • ±0% — diff under 10% (within noise threshold)
  • ↑N%/↓N% — diff 10-25%
  • ↑N%/↓N% — diff over 25% (significant)
📜 Run @ e3a9f3a (#20913639967)

✅ Results of HolmesGPT evals

Automatically triggered by commit e3a9f3a on branch claude/tool-approval-all-tools-lMWXe

View workflow logs

Results of HolmesGPT evals

  • ask_holmes: 9/9 test cases were successful, 0 regressions
Status Test case Time Turns Tools Cost
✅ 09_crashpod 37.8s ↑18% 7 14 $0.1859
✅ 101_loki_historical_logs_pod_deleted 49.1s ↓27% 7 13 $0.1781
✅ 111_pod_names_contain_service 38.2s ±0% 7 15 $0.1804
✅ 12_job_crashing 45.9s ±0% 9 18 $0.2094
✅ 162_get_runbooks 53.3s ±0% 8 20 $0.2457
✅ 176_network_policy_blocking_traffic_no_runbooks 44.2s ±0% 8 16 $0.2036
✅ 24_misconfigured_pvc 36.0s ±0% 7 17 $0.1766
✅ 43_current_datetime_from_prompt 3.4s ±0% 1 — $0.0621
✅ 61_exact_match_counting 11.7s ±0% 3 3 $0.0860
Total 35.5s avg 6.3 avg 14.5 avg $1.5278

Time/Cost columns show % change vs historical average (↑slower/costlier, ↓faster/cheaper). Changes under 10% shown as ±0%.

Historical Comparison Details

Filter: excluding branch 'claude/tool-approval-all-tools-lMWXe'

Status: Success - 11 test/model combinations loaded

Experiments compared (30):

Comparison indicators:

  • ±0% — diff under 10% (within noise threshold)
  • ↑N%/↓N% — diff 10-25%
  • ↑N%/↓N% — diff over 25% (significant)

✅ Results of HolmesGPT evals

Automatically triggered by commit a7acd3f on branch claude/tool-approval-all-tools-lMWXe

View workflow logs

Results of HolmesGPT evals

  • ask_holmes: 9/9 test cases were successful, 0 regressions
Status Test case Time Turns Tools Cost
✅ 09_crashpod 34.8s ±0% 7 14 $0.1770
✅ 101_loki_historical_logs_pod_deleted 53.0s ±0% 7 16 $0.2258
✅ 111_pod_names_contain_service 37.7s ↓13% 7 15 $0.1753
✅ 12_job_crashing 46.3s ±0% 8 19 $0.2086
✅ 162_get_runbooks 42.9s ↓14% 7 14 $0.2118
✅ 176_network_policy_blocking_traffic_no_runbooks 38.9s ±0% 6 15 $0.1891
✅ 24_misconfigured_pvc 35.1s ↓14% 7 17 $0.1707
✅ 43_current_datetime_from_prompt 3.4s ±0% 1 — $0.0618
✅ 61_exact_match_counting 10.4s ↓11% 3 3 $0.0859
Total 33.6s avg 5.9 avg 14.1 avg $1.5062

Time/Cost columns show % change vs historical average (↑slower/costlier, ↓faster/cheaper). Changes under 10% shown as ±0%.

Historical Comparison Details

Filter: excluding branch 'claude/tool-approval-all-tools-lMWXe'

Status: Success - 17 test/model combinations loaded

Experiments compared (30):

Comparison indicators:

  • ±0% — diff under 10% (within noise threshold)
  • ↑N%/↓N% — diff 10-25%
  • ↑N%/↓N% — diff over 25% (significant)
📖 Legend
Icon Meaning
✅ The test was successful
➖ The test was skipped
⚠️ The test failed but is known to be flaky or known to fail
🚧 The test had a setup failure (not a code regression)
🔧 The test failed due to mock data issues (not a code regression)
🚫 The test was throttled by API rate limits/overload
❌ The test failed and should be fixed before merging the PR
🔄 Re-run evals manually

⚠️ Warning: /eval comments always run using the workflow from master, not from this PR branch. If you modified the GitHub Action (e.g., added secrets or env vars), those changes won't take effect.

To test workflow changes, use the GitHub CLI or Actions UI instead:

gh workflow run eval-regression.yaml --repo HolmesGPT/holmesgpt --ref claude/tool-approval-all-tools-lMWXe -f markers=regression -f filter=

Option 1: Comment on this PR with /eval:

/eval
markers: regression

Or with more options (one per line):

/eval
model: gpt-4o
markers: regression
filter: 09_crashpod
iterations: 5

Run evals on a different branch (e.g., master) for comparison:

/eval
branch: master
markers: regression
Option Description
model Model(s) to test (default: same as automatic runs)
markers Pytest markers (no default - runs all tests!)
filter Pytest -k filter (use /list to see valid eval names)
iterations Number of runs, max 10
branch Run evals on a different branch (for cross-branch comparison)

Quick re-run: Use /rerun to re-run the most recent /eval on this PR with the same parameters.

Option 2: Trigger via GitHub Actions UI → "Run workflow"

🏷️ Valid markers

benchmark, chain-of-causation, compaction, context_window, coralogix, counting, database, datadog, datetime, easy, elasticsearch, embeds, frontend, grafana-dashboard, hard, kafka, kubernetes, leaked-information, logs, loki, medium, metrics, network, newrelic, no-cicd, numerical, one-test, port-forward, prometheus, question-answer, regression, runbooks, slackbot, storage, toolset-limitation, traces, transparency


Commands: /eval · /rerun · /list

CLI: gh workflow run eval-regression.yaml --repo HolmesGPT/holmesgpt --ref claude/tool-approval-all-tools-lMWXe -f markers=regression -f filter=

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Walkthrough

Adds per-interaction runbook state and conditional restricted-tool gating, integrates approval checks into tool invocation, refreshes the active tool list when runbook state changes, and resets interaction state on empty interactive input.

Changes

Cohort / File(s) Summary
Runbook state & tool filtering
holmes/core/tool_calling_llm.py
Adds _runbook_in_use attribute, reset_interaction_state(), _should_include_restricted_tools(), _get_tools(), and integrates runbook-aware tool selection and dynamic tool-list refresh into streaming and non-streaming flows.
Approval model & toolset config
holmes/core/tools.py
Adds ApprovalRequirement model; Tool.restricted: bool; ToolInvokeContext.restricted_tools_enabled and runbook_in_use; pattern-based restricted_tools and approval_required_tools on Toolset/YAML; fnmatch-based approval/restriction helpers and approval-checking flow.
Tool invocation approval enforcement
holmes/plugins/toolsets/bash/bash_toolset.py
Adds requires_approval() to RunBashCommand, refactors _invoke() to run approved commands directly, treat safety validation as a transform for non-approved commands, and return structured errors + Sentry reporting on validation failure.
Tool listing/filter helper
holmes/core/tools_utils/tool_executor.py
get_all_tools_openai_format() gains include_restricted: bool = True and now filters out restricted tools when False.
Minor behavior/formatting
holmes/plugins/toolsets/mcp/toolset_mcp.py, holmes/interactive.py
MCP: improved one-liner formatting for name+args lists. Interactive: calls ai.reset_interaction_state() on empty/whitespace input before building messages.

Sequence Diagram

sequenceDiagram
    participant User
    participant Interactive as holmes/interactive.py
    participant LLM as ToolCallingLLM
    participant Runbook as Runbook/Config
    participant Tool as Tool
    participant Context as ToolInvokeContext

    User->>Interactive: send input
    Interactive->>LLM: reset_interaction_state()
    LLM->>LLM: build tool list via _get_tools()
    LLM->>Runbook: fetch_runbook()
    alt runbook returned
        Runbook-->>LLM: runbook
        LLM->>LLM: set _runbook_in_use = True
        LLM->>LLM: refresh tools (restricted included)
    end
    LLM->>Tool: invoke(params, context)
    Tool->>Tool: requires_approval(params, context)?
    alt approval required
        Tool->>Context: check context.user_approved
        alt approved
            Tool-->>LLM: execution result
        else not approved
            Tool-->>LLM: APPROVAL_REQUIRED (reason)
        end
    else no approval needed
        Tool-->>LLM: execution result
    end
    LLM->>LLM: if runbook activated, re-fetch tools and update list
    LLM-->>User: response
Loading

Estimated code review effort

🎯 4 (Complex) | ⏱️ ~45 minutes

Possibly related PRs

  • PR #919: Modifies holmes/core/tool_calling_llm.py and tool-invocation flow with runbook/approval-related changes.
  • PR #1037: Propagates runbook/user_approved state into tool invocation flows in tool_calling_llm.py.
  • PR #851: Adds per-instance state and integrates new context into prompt/tool selection within ToolCallingLLM.

Suggested labels

codex

Suggested reviewers

  • nherment
  • moshemorad
🚥 Pre-merge checks | ✅ 1 | ❌ 2
❌ Failed checks (1 warning, 1 inconclusive)
Check name Status Explanation Resolution
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Title check ❓ Inconclusive The title is vague and non-descriptive—it uses an unclear branch name format and does not clearly convey the main feature or change being introduced. Use a clear, descriptive title that summarizes the main change, such as 'Add tool approval and restriction capabilities' or 'Implement restricted tools and approval requirements system'.
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🧹 Recent nitpick comments
holmes/core/tools.py (1)

887-888: Consider adding field descriptions for consistency.

These fields lack the descriptions present in the parent Toolset class (lines 616-623). While functionally equivalent, adding matching descriptions would improve consistency and documentation for users creating YAML configs.

♻️ Suggested improvement
-    restricted_tools: List[str] = Field(default_factory=list)
-    approval_required_tools: List[str] = Field(default_factory=list)
+    restricted_tools: List[str] = Field(
+        default_factory=list,
+        description="Tool names/patterns that require runbook authorization (use '*' for all tools)",
+    )
+    approval_required_tools: List[str] = Field(
+        default_factory=list,
+        description="Tool names/patterns that require user approval before execution (use '*' for all tools)",
+    )

📜 Recent review details

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Reviewing files that changed from the base of the PR and between 39b37e5 and a7acd3f.

📒 Files selected for processing (2)
  • holmes/core/tool_calling_llm.py
  • holmes/core/tools.py
🚧 Files skipped from review as they are similar to previous changes (1)
  • holmes/core/tool_calling_llm.py
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**/*.py

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**/*.{js,ts,tsx,jsx,py,java,cs,go,rb,php}

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Files:

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🧠 Learnings (4)
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Only define current field names in toolset config schema with extra='allow' to avoid polluting model_dump() output with deprecated fields

Applied to files:

  • holmes/core/tools.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Maintain backwards compatibility in toolset config using Pydantic's extra='allow' when renaming config fields

Applied to files:

  • holmes/core/tools.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Bash toolset validates commands for safety

Applied to files:

  • holmes/core/tools.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Implement simple Pydantic config class with validation for Python toolsets

Applied to files:

  • holmes/core/tools.py
🪛 Ruff (0.14.11)
holmes/core/tools.py

310-310: Unused method argument: params

(ARG002)


310-310: Unused method argument: context

(ARG002)

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  • GitHub Check: Redirect rules - holmes-docs
  • GitHub Check: Header rules - holmes-docs
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🔇 Additional comments (9)
holmes/core/tools.py (9)

1-1: LGTM!

Import correctly placed at top of file and used for pattern matching in _is_restricted() and _check_approval_config().


110-113: LGTM!

Clean Pydantic model for approval workflow. Usage in bash_toolset.py confirms the design aligns with tool-specific override patterns.


180-183: LGTM!

Clear field definition with descriptive documentation. Provides per-tool restriction capability that complements pattern-based toolset configuration.


245-256: LGTM!

Clean approval guard clause that short-circuits tool execution when approval is needed. The structured result includes all relevant context for downstream handling.


288-294: LGTM!

Good layered approach: toolset-level approval patterns take precedence, then falls back to tool-specific logic. This matches the bash toolset's requires_approval override pattern shown in the relevant snippet.


296-307: LGTM!

Pattern matching implementation is correct. The reason message helpfully includes both the tool name and the matched pattern for debugging.


309-313: LGTM!

Template method pattern correctly implemented. The params and context arguments are intentionally included for subclass implementations (e.g., bash_toolset.py uses them for command safety validation). The static analysis ARG002 warnings are false positives for this pattern.


616-623: LGTM!

Fields are correctly defined with default_factory=list to avoid mutable default issues. Descriptions clearly document the pattern-matching capability including the wildcard option.


276-286: No action required — method is actively used.

The _is_restricted() method is called from holmes/core/tools_utils/tool_executor.py:70 to filter out restricted tools. The method is not dead code.

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✅ Docker image ready for bd80051 (built in 5m 34s)

⚠️ Warning: does not support ARM (ARM images are built on release only - not on every PR)

Use this tag to pull the image for testing.

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⚠️ Temporary images are deleted after 30 days. Copy to a permanent registry before using them:

gcloud auth configure-docker us-central1-docker.pkg.dev
docker pull us-central1-docker.pkg.dev/robusta-development/temporary-builds/holmes:bd80051
docker tag us-central1-docker.pkg.dev/robusta-development/temporary-builds/holmes:bd80051 me-west1-docker.pkg.dev/robusta-development/development/holmes-dev:bd80051
docker push me-west1-docker.pkg.dev/robusta-development/development/holmes-dev:bd80051

Patch Helm values in one line (choose the chart you use):

HolmesGPT chart:

helm upgrade --install holmesgpt ./helm/holmes \
  --set registry=me-west1-docker.pkg.dev/robusta-development/development \
  --set image=holmes-dev:bd80051

Robusta wrapper chart:

helm upgrade --install robusta robusta/robusta \
  --reuse-values \
  --set holmes.registry=me-west1-docker.pkg.dev/robusta-development/development \
  --set holmes.image=holmes-dev:bd80051

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/eval
filter: restricted_tool
iterations: 1

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Actionable comments posted: 4

🤖 Fix all issues with AI agents
In @holmes/plugins/toolsets/bash/bash_toolset.py:
- Around line 213-223: The except block that catches (argparse.ArgumentError,
ValueError) must not fall back to executing the original unvalidated command;
instead fail safely: when make_command_safe(command_str, self.toolset.config)
raises and context.user_approved is False, propagate or raise a
SecurityError/ValueError and abort execution (or return an error response), and
log the failure; update the handler around make_command_safe in the method that
sets command_to_execute (referencing make_command_safe, context.user_approved,
command_to_execute, and requires_approval) to stop execution on that exception
rather than assigning command_str.

In
@tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml:
- Line 19: Replace the "sleep 5" call used in the retry loop with "sleep 1" in
this test case; locate the literal "sleep 5" in
tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
and change it to "sleep 1" so the retry loop uses a 1-second delay.

In
@tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/manifests.yaml:
- Around line 1-19: Rename the Pod metadata.name from "test-pod" to a unique,
realistic service name (e.g., "checkout-api-196" or "user-service-196") and
update the labels.app to match; ensure this new name does not collide with the
Pod used in test 195. Add a securityContext block under spec.containers[*] (for
the container named "app") setting runAsNonRoot: true, runAsUser to a non-root
UID (eg. 1000), allowPrivilegeEscalation: false, privileged: false and consider
readOnlyRootFilesystem: true to harden the container. Ensure labels and name are
consistent and that no other test uses the same metadata.name.

In
@tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/test_case.yaml:
- Line 24: Replace the "sleep 5" used in the retry loop with "sleep 1" to follow
the guideline of using 1-second sleeps for retries; update the occurrence of
"sleep 5" in the test case's retry logic to "sleep 1" while keeping other
intentional longer sleeps unchanged.
🧹 Nitpick comments (6)
holmes/plugins/prompts/_general_instructions.jinja2 (1)

68-83: Good policy addition; consider aligning wording with the approval flow and avoiding over-claiming side effects.
Two small tweaks to consider:

  1. If some tools are “approval-required” (not necessarily “[RESTRICTED]”), add a one-liner that the agent must request approval when prompted by the system.
  2. If “read-only by design” is still true for most tools, consider wording like “may have side effects / perform remediation” instead of “can make changes to the system” to avoid contradictions.
tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/pod_logs_runbook.md (1)

1-20: Expand runbook to follow the standard structure.

The runbook is missing several required sections according to established patterns:

  • Goal section (Primary Objective, Scope, Agent Mandate, Expected Outcome)
  • Workflow section with detailed sequential steps including Action, Function Description, Parameters, Expected Output, and Success/Failure Criteria
  • Synthesize Findings section (Data Correlation, Pattern Recognition, Prioritization Logic)
  • Recommended Remediation Steps section (Immediate Actions, Permanent Solutions, Verification Steps)

The current "Steps" section (lines 7-9) uses generic tool names rather than function descriptions, which is good. However, consider expanding to the full workflow format for consistency with other runbooks.

Based on learnings, runbooks should provide comprehensive guidance to the AI agent.

📖 Example expanded structure
 # Pod Logs Investigation Runbook
 
-This runbook guides you through investigating pod logs to diagnose application issues.
+## Goal
+
+**Primary Objective**: Investigate pod logs to identify application errors and anomalies
+**Scope**: Single pod log retrieval and analysis
+**Agent Mandate**: Retrieve and analyze pod logs to diagnose issues
+**Expected Outcome**: Identification of error patterns or confirmation of normal operation
 
-## Steps
+## Workflow
 
 1. First, identify the pod you need to investigate
-2. Use the kubernetes logs tool to retrieve the pod logs
+   - **Action**: Identify target pod
+   - **Function Description**: List pods to find the target
+   - **Expected Output**: Pod name and status
+   
+2. Retrieve the pod logs
+   - **Action**: Use a command to retrieve logs from the identified pod
+   - **Function Description**: Execute a command to fetch container logs
+   - **Expected Output**: Log entries from the pod
+   
 3. Analyze the logs for error messages or unusual patterns
+   - **Action**: Review logs for errors
+   - **Success Criteria**: Errors identified or normal operation confirmed
tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/manifests.yaml (1)

1-19: Consider security hardening and verify pod name uniqueness.

The static analysis flags two security concerns:

  1. Containers should not run with allowPrivilegeEscalation
  2. Minimize admission of root containers

While these are valid security practices, they may be acceptable for test fixtures. However, adding security context would demonstrate best practices:

🔒 Optional security hardening
   containers:
     - name: app
       image: busybox:1.36
       command: ["sh", "-c", "echo 'Application started successfully' && sleep 3600"]
+      securityContext:
+        allowPrivilegeEscalation: false
+        runAsNonRoot: true
+        runAsUser: 1000
       resources:

Additionally, the pod name test-pod is also used in test 196 (different namespace: app-196). According to coding guidelines, pod names should be unique across tests. While different namespaces technically isolate them, consider using more distinct names like test-pod-195 and test-pod-196 to avoid confusion.

tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml (1)

1-6: Consider adding an empty runbooks catalog.

This test validates that restricted tools are blocked when no runbook is provided. According to coding guidelines, eval tests should explicitly declare the runbooks field. Adding runbooks: {} would make the test's intent clearer - that no runbooks are available for authorization.

📚 Proposed addition
 user_prompt: "Get the logs from the test-pod in the app-195 namespace"
 expected_output:
   - The tool is restricted and requires runbook authorization
   - Holmes should report that the logs tool was blocked or restricted
   - Must NOT successfully retrieve the logs
 include_tool_calls: true
+runbooks: {}
 before_test: |

Based on learnings, explicit runbook configuration in test cases improves clarity.

holmes/core/tool_calling_llm.py (1)

182-189: Consider documenting the reset behavior more explicitly.

The reset_conversation_state() method intentionally does NOT reset _restricted_tools_enabled because it's "set per-request". This asymmetry could be confusing to future maintainers. Consider either:

  1. Renaming to reset_runbook_state() to clarify that only runbook-related state is reset, or
  2. Adding a more detailed docstring explaining the lifecycle difference between these two flags

The current implementation is functionally correct, but the asymmetric reset behavior warrants clearer documentation.

📝 Enhanced documentation example
 def reset_conversation_state(self) -> None:
-    """Reset conversation-level state for a new conversation."""
+    """Reset conversation-level state for a new conversation.
+    
+    Note: _restricted_tools_enabled is NOT reset here because it is set 
+    per-request at a higher level (e.g., via set_restricted_tools_enabled()),
+    whereas _runbook_in_use is tracked dynamically during the conversation.
+    """
     self._runbook_in_use = False
-    # Note: _restricted_tools_enabled is not reset here as it's set per-request
holmes/plugins/toolsets/bash/bash_toolset.py (1)

166-193: Replace configure_scope() with new_scope() for temporary scope modifications.

The configure_scope() context manager is deprecated in sentry-sdk 2.0+. For short-lived scope modifications like this, use sentry_sdk.new_scope() instead.

♻️ Proposed fix
             # Report to Sentry for monitoring unsafe command attempts
-            with sentry_sdk.configure_scope() as scope:
+            with sentry_sdk.new_scope() as scope:
                 scope.set_extra("command", command_str)
                 scope.set_extra("error", str(e))
                 scope.set_extra("unsafe_allow_all", BASH_TOOL_UNSAFE_ALLOW_ALL)
                 sentry_sdk.capture_exception(e)
📜 Review details

Configuration used: Organization UI

Review profile: CHILL

Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between a6dc7e8 and 513fe2b.

📒 Files selected for processing (13)
  • holmes/core/tool_calling_llm.py
  • holmes/core/tools.py
  • holmes/plugins/prompts/_general_instructions.jinja2
  • holmes/plugins/toolsets/bash/bash_toolset.py
  • pyproject.toml
  • tests/core/test_tool_approval_restriction.py
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/manifests.yaml
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/manifests.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/pod_logs_runbook.md
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/toolsets.yaml
🧰 Additional context used
📓 Path-based instructions (9)
tests/llm/**/*.{py,yaml}

📄 CodeRabbit inference engine (CLAUDE.md)

All pod names must be unique across tests (never reuse pod names between tests)

Files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/manifests.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/manifests.yaml
tests/llm/**/*.yaml

📄 CodeRabbit inference engine (CLAUDE.md)

tests/llm/**/*.yaml: Never use resource names that hint at the problem or expected behavior in evals (avoid broken-pod, test-project-that-does-not-exist, crashloop-app)
Only use valid tags from pyproject.toml for LLM tests - invalid tags cause test collection failures
Use exit 1 when setup verification fails to fail the test early
Poll real API endpoints and check for expected content in setup verification, don't just test pod readiness
Use kubectl exec over port forwarding for setup verification to avoid port conflicts
Use sleep 1 instead of sleep 5 for retry loops, remove unnecessary sleeps, reduce timeout values (60s for pod readiness, 30s for API verification)
Use retry loops for kubectl wait to handle race conditions, don't use bare kubectl wait immediately after resource creation
Use realistic logs in eval tests, not fake/obvious logs like 'Memory usage stabilized at 800MB'
Use realistic filenames in eval tests, not hints like 'disk_consumer.py' - use names like 'training_pipeline.py'
Use real-world scenarios in eval tests (ML pipelines with checkpoint issues, database connection pools) not simulated scenarios

Files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/manifests.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/manifests.yaml
tests/llm/fixtures/test_ask_holmes/**/*.yaml

📄 CodeRabbit inference engine (CLAUDE.md)

Use sequential test numbers for eval tests, checking existing tests for next available number

Files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/manifests.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/manifests.yaml
tests/llm/fixtures/**/*.yaml

📄 CodeRabbit inference engine (CLAUDE.md)

tests/llm/fixtures/**/*.yaml: Required files for eval tests: test_case.yaml, infrastructure manifests, and toolsets.yaml (if needed)
Use Secrets for scripts in eval test manifests, not inline manifests or ConfigMaps
Never use :latest container tags - use specific versions like grafana/grafana:12.3.1
Be specific in expected_output - test exact values like title or unique injected values, not generic patterns
Match user prompt to test - prompt must explicitly request what you're testing
Don't use technical terms that give away solutions in user prompts - use anti-cheat prompts that prevent domain knowledge shortcuts
Test discovery and analysis ability, not recognition - Holmes should search/analyze, not guess from context
Use include_tool_calls: true to verify tool was called when output values are too generic to rule out hallucinations
Use neutral, application-specific names in eval resources instead of obvious technical terms to prevent domain knowledge cheats
Avoid hint-giving resource names - use realistic business context (checkout-api, user-service, inventory-db) not obvious problem indicators (broken-pod, payment-service-1)
Implement full architecture in eval tests even if complex (use Loki for log aggregation, proper separation of concerns) with minimal resource footprints
Add source comments in eval test manifests for anti-cheat: 'Uses Node Exporter dashboard but renamed to prevent cheats'
Custom runbooks in eval tests: Add runbooks field in test_case.yaml (use runbooks: {} for empty catalog)
Custom toolsets for eval tests: Create separate toolsets.yaml file, never put toolset config in test_case.yaml
Toolset config in eval tests must go under config field: toolsets.toolset_name.enabled.config

Files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/manifests.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/manifests.yaml
holmes/plugins/prompts/**/*.jinja2

📄 CodeRabbit inference engine (CLAUDE.md)

Prompts should be Jinja2 templates in holmes/plugins/prompts/{name}.jinja2

Files:

  • holmes/plugins/prompts/_general_instructions.jinja2
**/*.py

📄 CodeRabbit inference engine (CLAUDE.md)

**/*.py: Always place Python imports at the top of the file, not inside functions or methods
Use Ruff for formatting and linting with configuration in pyproject.toml
Type hints required (mypy configuration in pyproject.toml)
Pre-commit hooks enforce quality checks on Python files

Files:

  • holmes/core/tool_calling_llm.py
  • holmes/plugins/toolsets/bash/bash_toolset.py
  • holmes/core/tools.py
  • tests/core/test_tool_approval_restriction.py
holmes/plugins/toolsets/**/*.{py,yaml}

📄 CodeRabbit inference engine (CLAUDE.md)

holmes/plugins/toolsets/**/*.{py,yaml}: All toolsets MUST return detailed error messages from underlying APIs to enable LLM self-correction, including exact query/command executed, time ranges/parameters/filters used, and full API error response (status code and message)
For 'no data' responses in toolsets, specify what was searched and where
Never return unbounded data from APIs - always include filter parameters on tools that query collections

Files:

  • holmes/plugins/toolsets/bash/bash_toolset.py
holmes/plugins/toolsets/**/*.py

📄 CodeRabbit inference engine (CLAUDE.md)

holmes/plugins/toolsets/**/*.py: Use requests library for HTTP calls in Python toolsets, not specialized client libraries like opensearchpy
Implement simple Pydantic config class with validation for Python toolsets
Include health check in prerequisites_callable() method for Python toolsets
Each tool in Python toolsets should be a thin wrapper around a single API endpoint
Use JsonFilterMixin for client-side filtering when server-side filtering is not possible, adding max_depth and jq parameters
Maintain backwards compatibility in toolset config using Pydantic's extra='allow' when renaming config fields
Only define current field names in toolset config schema with extra='allow' to avoid polluting model_dump() output with deprecated fields
Use @model_validator(mode='after') in toolset config to map old field names to new names and log deprecation warnings
Bash toolset validates commands for safety

Files:

  • holmes/plugins/toolsets/bash/bash_toolset.py
tests/**/*.py

📄 CodeRabbit inference engine (CLAUDE.md)

tests/**/*.py: Tests should match source structure under tests/
Live execution is now enabled by default to ensure tests match real-world behavior

Files:

  • tests/core/test_tool_approval_restriction.py
🧠 Learnings (37)
📓 Common learnings
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: New toolsets require integration tests
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Bash toolset validates commands for safety
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Custom toolsets for eval tests: Create separate toolsets.yaml file, never put toolset config in test_case.yaml

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/test_case.yaml
  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Toolset config in eval tests must go under config field: toolsets.toolset_name.enabled.config

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/toolsets.yaml
  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Required files for eval tests: test_case.yaml, infrastructure manifests, and toolsets.yaml (if needed)

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/manifests.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/manifests.yaml
  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.yaml : Toolsets should be YAML files in holmes/plugins/toolsets/{name}.yaml or {name}/ directory structure

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/toolsets.yaml
  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Use include_tool_calls: true to verify tool was called when output values are too generic to rule out hallucinations

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/test_case.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: New toolsets require integration tests

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/toolsets.yaml
  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Implement full architecture in eval tests even if complex (use Loki for log aggregation, proper separation of concerns) with minimal resource footprints

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/manifests.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/manifests.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/kubernetes*.py : RBAC permissions are respected for Kubernetes access

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/toolsets.yaml
  • holmes/plugins/toolsets/bash/bash_toolset.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Add source comments in eval test manifests for anti-cheat: 'Uses Node Exporter dashboard but renamed to prevent cheats'

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/manifests.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/manifests.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Custom runbooks in eval tests: Add runbooks field in test_case.yaml (use runbooks: {} for empty catalog)

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/pod_logs_runbook.md
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/manifests.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Match user prompt to test - prompt must explicitly request what you're testing

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/test_case.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Test discovery and analysis ability, not recognition - Holmes should search/analyze, not guess from context

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/test_case.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/test_ask_holmes/**/*.yaml : Use sequential test numbers for eval tests, checking existing tests for next available number

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/test_case.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Be specific in expected_output - test exact values like title or unique injected values, not generic patterns

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Only define current field names in toolset config schema with extra='allow' to avoid polluting model_dump() output with deprecated fields

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/toolsets.yaml
  • holmes/core/tools.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Use Secrets for scripts in eval test manifests, not inline manifests or ConfigMaps

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/toolsets.yaml
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/manifests.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/manifests.yaml
📚 Learning: 2025-12-21T13:17:57.170Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: holmes/plugins/runbooks/CLAUDE.md:0-0
Timestamp: 2025-12-21T13:17:57.170Z
Learning: Applies to holmes/plugins/runbooks/**/*.md : Runbook must include Recommended Remediation Steps section with Immediate Actions, Permanent Solutions, Verification Steps, Documentation References, Escalation Criteria, and Post-Remediation Monitoring

Applied to files:

  • holmes/plugins/prompts/_general_instructions.jinja2
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/pod_logs_runbook.md
📚 Learning: 2025-12-21T13:17:57.170Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: holmes/plugins/runbooks/CLAUDE.md:0-0
Timestamp: 2025-12-21T13:17:57.170Z
Learning: Applies to holmes/plugins/runbooks/**/*.md : Use generic function descriptions in workflow steps (e.g., 'execute a command to test network connectivity') rather than tool-specific names to enable mapping to available tools

Applied to files:

  • holmes/plugins/prompts/_general_instructions.jinja2
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/pod_logs_runbook.md
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Bash toolset validates commands for safety

Applied to files:

  • holmes/plugins/prompts/_general_instructions.jinja2
  • holmes/plugins/toolsets/bash/bash_toolset.py
  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: All tools have read-only access by design

Applied to files:

  • holmes/plugins/prompts/_general_instructions.jinja2
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/**/*.yaml : Use sleep 1 instead of sleep 5 for retry loops, remove unnecessary sleeps, reduce timeout values (60s for pod readiness, 30s for API verification)

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/manifests.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/manifests.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/**/*.yaml : Never use resource names that hint at the problem or expected behavior in evals (avoid broken-pod, test-project-that-does-not-exist, crashloop-app)

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/manifests.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/manifests.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/shared/**/*.yaml : Create shared infrastructure manifest in tests/llm/fixtures/shared/servicename.yaml when multiple tests use the same service

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/manifests.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/manifests.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/**/*.yaml : Poll real API endpoints and check for expected content in setup verification, don't just test pod readiness

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/manifests.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Avoid hint-giving resource names - use realistic business context (checkout-api, user-service, inventory-db) not obvious problem indicators (broken-pod, payment-service-1)

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/manifests.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/manifests.yaml
📚 Learning: 2025-12-21T13:17:57.170Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: holmes/plugins/runbooks/CLAUDE.md:0-0
Timestamp: 2025-12-21T13:17:57.170Z
Learning: Applies to holmes/plugins/runbooks/**/*.md : Include verification steps in workflow to confirm each diagnostic action was successful before proceeding

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/pod_logs_runbook.md
📚 Learning: 2025-12-21T13:17:57.170Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: holmes/plugins/runbooks/CLAUDE.md:0-0
Timestamp: 2025-12-21T13:17:57.170Z
Learning: Applies to holmes/plugins/runbooks/**/*.md : Runbook must include Synthesize Findings section with Data Correlation, Pattern Recognition, Prioritization Logic, Evidence Requirements, and Example Scenarios

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/pod_logs_runbook.md
📚 Learning: 2025-12-21T13:17:57.170Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: holmes/plugins/runbooks/CLAUDE.md:0-0
Timestamp: 2025-12-21T13:17:57.170Z
Learning: Applies to holmes/plugins/runbooks/**/*.md : Place runbook files in category folders under holmes/plugins/runbooks/ and use consistent lowercase filenames with hyphens (e.g., dns-resolution-troubleshooting.md)

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/pod_logs_runbook.md
📚 Learning: 2025-12-21T13:17:57.170Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: holmes/plugins/runbooks/CLAUDE.md:0-0
Timestamp: 2025-12-21T13:17:57.170Z
Learning: Applies to holmes/plugins/runbooks/**/*.md : Runbook must include Goal section with Primary Objective, Scope, Agent Mandate, and Expected Outcome

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/pod_logs_runbook.md
📚 Learning: 2025-12-21T13:17:57.170Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: holmes/plugins/runbooks/CLAUDE.md:0-0
Timestamp: 2025-12-21T13:17:57.170Z
Learning: Applies to holmes/plugins/runbooks/**/*.md : Runbook must include Workflow section with numbered sequential steps containing Action, Function Description, Parameters, Expected Output, and Success/Failure Criteria

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/pod_logs_runbook.md
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/**/*.{py,yaml} : All pod names must be unique across tests (never reuse pod names between tests)

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/manifests.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Include health check in prerequisites_callable() method for Python toolsets

Applied to files:

  • holmes/plugins/toolsets/bash/bash_toolset.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Each tool in Python toolsets should be a thin wrapper around a single API endpoint

Applied to files:

  • holmes/plugins/toolsets/bash/bash_toolset.py
  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Implement simple Pydantic config class with validation for Python toolsets

Applied to files:

  • holmes/plugins/toolsets/bash/bash_toolset.py
  • holmes/core/tools.py
  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Maintain backwards compatibility in toolset config using Pydantic's extra='allow' when renaming config fields

Applied to files:

  • holmes/core/tools.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: All new features require unit tests

Applied to files:

  • tests/core/test_tool_approval_restriction.py
🧬 Code graph analysis (2)
holmes/core/tool_calling_llm.py (1)
holmes/core/tools.py (2)
  • invoke (252-307)
  • StructuredToolResultStatus (54-78)
holmes/plugins/toolsets/bash/bash_toolset.py (2)
holmes/core/tools.py (3)
  • ApprovalRequirement (110-114)
  • requires_approval (378-387)
  • ToolInvokeContext (165-177)
holmes/plugins/toolsets/bash/parse_command.py (1)
  • make_command_safe (152-176)
🪛 Checkov (3.2.334)
tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/manifests.yaml

[medium] 1-19: Containers should not run with allowPrivilegeEscalation

(CKV_K8S_20)


[medium] 1-19: Minimize the admission of root containers

(CKV_K8S_23)

tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/manifests.yaml

[medium] 1-19: Containers should not run with allowPrivilegeEscalation

(CKV_K8S_20)


[medium] 1-19: Minimize the admission of root containers

(CKV_K8S_23)

🪛 Ruff (0.14.10)
holmes/plugins/toolsets/bash/bash_toolset.py

167-167: Unused method argument: context

(ARG002)


177-177: Consider moving this statement to an else block

(TRY300)


192-192: Use explicit conversion flag

Replace with conversion flag

(RUF010)

holmes/core/tools.py

379-379: Unused method argument: params

(ARG002)


379-379: Unused method argument: context

(ARG002)

tests/core/test_tool_approval_restriction.py

36-36: Unused method argument: context

(ARG002)


51-51: Unused method argument: params

(ARG002)


51-51: Unused method argument: context

(ARG002)


58-58: Unused method argument: context

(ARG002)


65-65: Unused method argument: params

(ARG002)


73-73: Unused method argument: context

(ARG002)


82-82: Unused method argument: context

(ARG002)


249-249: Unused method argument: base_context

(ARG002)


274-274: Unused method argument: base_context

(ARG002)


297-297: Unused method argument: base_context

(ARG002)

⏰ Context from checks skipped due to timeout of 90000ms. You can increase the timeout in your CodeRabbit configuration to a maximum of 15 minutes (900000ms). (5)
  • GitHub Check: llm_evals
  • GitHub Check: build
  • GitHub Check: build (3.11)
  • GitHub Check: build (3.12)
  • GitHub Check: build (3.10)
🔇 Additional comments (19)
pyproject.toml (1)

99-145: Pytest marker addition looks correct; enables new restricted/approval tests without “unknown marker” noise.

tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/toolsets.yaml (1)

1-7: Verify toolset config schema: is restricted_tools expected at this level (vs under a config object)?
If the schema expects toolsets.<name>.enabled.config, this fixture may silently not restrict anything. As per coding guidelines/learnings, toolset config often must live under the config field.

tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/toolsets.yaml (1)

1-9: Same schema check here: confirm restricted_tools placement and "*" wildcard behavior are actually enforced in tests.

holmes/core/tool_calling_llm.py (3)

178-180: LGTM! State tracking initialization is correct.

The conversation-scoped state fields are properly initialized and clearly documented. This enables the restriction and runbook authorization flow throughout the tool invocation lifecycle.


522-523: LGTM! Context propagation is implemented correctly.

The restriction and runbook state flags are properly passed to the ToolInvokeContext, enabling tools to make authorization decisions based on the current conversation state.


527-534: LGTM! Runbook tracking logic is correct.

The logic correctly:

  1. Checks if the invoked tool is fetch_runbook
  2. Verifies the tool call succeeded
  3. Sets _runbook_in_use to enable restricted tools for the remainder of the conversation
  4. Logs the state transition

The placement after tool.invoke() ensures the runbook was successfully fetched before enabling restricted tools.

holmes/plugins/toolsets/bash/bash_toolset.py (1)

15-15: LGTM!

Import of ApprovalRequirement is correctly added to support the new approval flow.

tests/core/test_tool_approval_restriction.py (5)

33-124: LGTM!

Test fixtures are well-structured. The unused parameter warnings from static analysis are false positives - abstract method overrides must accept the parameters even if not needed for the test implementation.


132-181: LGTM!

Good coverage of the ApprovalRequirement and RestrictionResult model classes, including default value verification.


246-320: LGTM!

The toolset approval configuration tests provide thorough coverage of pattern matching for approval_required_tools and require_approval_for_all_tools. The object.__setattr__ workaround for setting the toolset reference is acceptable given Pydantic's model constraints.


367-494: LGTM!

Excellent coverage of restriction mechanisms including tool-level flags, toolset patterns, and both bypass conditions (restricted_tools_enabled and runbook_in_use).


531-698: LGTM!

Critical test coverage for the interaction between restriction and approval mechanisms. The tests correctly verify that:

  1. Restriction is checked before approval (fail-fast on restricted tools)
  2. user_approved=True bypasses both checks
  3. Complex toolset configurations with both patterns work correctly

The edge case tests for empty patterns and wildcard matching are valuable additions.

holmes/core/tools.py (7)

110-121: LGTM!

The ApprovalRequirement and RestrictionResult models are well-designed with clear semantics. Using Pydantic BaseModel maintains consistency with the rest of the codebase.


175-177: LGTM!

The new context fields follow secure defaults (both False), ensuring tools are restricted unless explicitly authorized.


193-196: LGTM!

The restricted field on Tool is well-documented and defaults to False, maintaining backward compatibility.


239-250: LGTM!

Prefixing restricted tool descriptions with [RESTRICTED] provides clear signaling to the LLM about tool authorization requirements.


261-288: LGTM!

The multi-stage invocation flow correctly implements:

  1. Skip all checks if user_approved (user has explicitly authorized)
  2. Check restriction first (fail-fast on unauthorized tools)
  3. Check approval second (prompt for confirmation if needed)

The logging provides good observability for debugging authorization flows.


309-387: LGTM!

The helper methods are well-structured:

  • _is_restricted() correctly combines tool-level and toolset-level configuration
  • _check_approval_config() properly handles require_approval_for_all_tools before pattern matching
  • fnmatch.fnmatch is the right choice for glob-style pattern matching

The base requires_approval() method returning None provides a clean extension point for tools like RunBashCommand to implement custom approval logic.


690-702: LGTM!

The new toolset configuration fields provide flexible control over tool restrictions and approvals:

  • Pattern-based configuration via restricted_tools and approval_required_tools
  • Blanket approval via require_approval_for_all_tools

Using Field(default_factory=list) correctly handles mutable defaults.

Comment thread holmes/plugins/toolsets/bash/bash_toolset.py Outdated
Comment thread tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml Outdated
Comment thread tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/manifests.yaml Outdated
Comment thread tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/test_case.yaml Outdated
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@arikalon1 Your eval run has finished. ⚠️ Completed with 2 failures


🧪 Manual Eval Results

Parameter Value
Triggered via /eval comment
Branch claude/tool-approval-all-tools-lMWXe
Model bedrock/eu.anthropic.claude-sonnet-4-5-20250929-v1:0
Markers all LLM tests
Filter (-k) restricted_tool
Iterations 1
Duration 2m 2s
Workflow View logs | Rerun

Results of HolmesGPT evals

  • ask_holmes: 0/2 test cases were successful, 2 regressions
Status Test case Time Turns Tools Cost
❌ 195_restricted_tool_blocked 15.1s 4 5 $0.0445
❌ 196_restricted_tool_via_runbook — — — —
Total 15.1s avg 4.0 avg 5.0 avg $0.0445

Time/Cost columns show % change vs historical average (↑slower/costlier, ↓faster/cheaper). Changes under 10% shown as ±0%.

Historical Comparison Details

Filter: excluding branch 'master'

Status: Success - 9 test/model combinations loaded

Experiments compared (30):

Comparison indicators:

  • ±0% — diff under 10% (within noise threshold)
  • ↑N%/↓N% — diff 10-25%
  • ↑N%/↓N% — diff over 25% (significant)

⚠️ 2 Failures Detected

📖 Legend
Icon Meaning
✅ The test was successful
➖ The test was skipped
⚠️ The test failed but is known to be flaky or known to fail
🚧 The test had a setup failure (not a code regression)
🔧 The test failed due to mock data issues (not a code regression)
🚫 The test was throttled by API rate limits/overload
❌ The test failed and should be fixed before merging the PR
🔄 Re-run evals manually

⚠️ Warning: /eval comments always run using the workflow from master, not from this PR branch. If you modified the GitHub Action (e.g., added secrets or env vars), those changes won't take effect.

To test workflow changes, use the GitHub CLI or Actions UI instead:

gh workflow run eval-regression.yaml --repo HolmesGPT/holmesgpt --ref claude/tool-approval-all-tools-lMWXe -f markers=regression -f filter=

Option 1: Comment on this PR with /eval:

/eval
markers: regression

Or with more options (one per line):

/eval
model: gpt-4o
markers: regression
filter: 09_crashpod
iterations: 5

Run evals on a different branch (e.g., master) for comparison:

/eval
branch: master
markers: regression
Option Description
model Model(s) to test (default: same as automatic runs)
markers Pytest markers (no default - runs all tests!)
filter Pytest -k filter (use /list to see valid eval names)
iterations Number of runs, max 10
branch Run evals on a different branch (for cross-branch comparison)

Quick re-run: Use /rerun to re-run the most recent /eval on this PR with the same parameters.

Option 2: Trigger via GitHub Actions UI → "Run workflow"

🏷️ Valid markers

benchmark, chain-of-causation, compaction, context_window, coralogix, counting, database, datadog, datetime, easy, elasticsearch, embeds, frontend, grafana-dashboard, hard, kafka, kubernetes, leaked-information, logs, loki, medium, metrics, network, newrelic, no-cicd, numerical, one-test, port-forward, prometheus, question-answer, regression, runbooks, slackbot, storage, tool-restriction, toolset-limitation, traces, transparency


Commands: /eval · /rerun · /list

CLI: gh workflow run eval-regression.yaml --repo HolmesGPT/holmesgpt --ref claude/tool-approval-all-tools-lMWXe -f markers=regression -f filter=

The LLM was applying the Restricted Tools Policy too broadly to all
potentially destructive operations, even when those tools weren't
actually marked [RESTRICTED].

This caused the LLM to refuse bash delete commands that should go
through the approval flow (user confirmation), not be blocked entirely.

Changes to the prompt:
- Clarify policy ONLY applies to tools with [RESTRICTED] prefix
- Explicitly state non-restricted tools can be used normally
- Distinguish approval prompts from restriction blocking

Signed-off-by: Claude <noreply@anthropic.com>
Changed restriction enforcement from invocation-time blocking to
filtering tools from the tools list:

1. ToolExecutor.get_all_tools_openai_format():
   - Added include_restricted parameter
   - Filters out restricted tools when include_restricted=False

2. ToolCallingLLM:
   - Added _should_include_restricted_tools() and _get_tools() helpers
   - Re-fetches tools list after fetch_runbook activates restricted tools
   - Updates tools list dynamically when runbook_in_use becomes True

3. Tool.invoke():
   - Removed invocation-time restriction check
   - Approval check still happens at invocation time

4. Simplified prompt guidance:
   - Removed "Restricted Tools Policy" (no longer needed)
   - Added simple "Tool Approval" section explaining approval flow

This approach is more robust:
- LLM cannot call tools it cannot see
- No reliance on prompt engineering for security
- Restricted tools become available after fetch_runbook
- Approval still works at invocation time for user confirmation

Updated unit tests to reflect new filtering-based design.

Signed-off-by: Claude <noreply@anthropic.com>

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Actionable comments posted: 0

🧹 Nitpick comments (1)
tests/core/test_tool_approval_restriction.py (1)

268-268: Consider refactoring the tool-toolset relationship.

The repeated use of object.__setattr__(tool, "toolset", toolset) to bypass Pydantic validation suggests that the dynamic toolset attribute on Tool might benefit from being a proper field. While this workaround is acceptable in tests, consider adding toolset: Optional[Toolset] = None to the Tool model to make this relationship explicit and type-safe.

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  • holmes/core/tool_calling_llm.py
  • holmes/core/tools.py
  • holmes/core/tools_utils/tool_executor.py
  • holmes/plugins/prompts/_general_instructions.jinja2
  • tests/core/test_tool_approval_restriction.py
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📓 Path-based instructions (3)
holmes/plugins/prompts/**/*.jinja2

📄 CodeRabbit inference engine (CLAUDE.md)

Prompts should be Jinja2 templates in holmes/plugins/prompts/{name}.jinja2

Files:

  • holmes/plugins/prompts/_general_instructions.jinja2
**/*.py

📄 CodeRabbit inference engine (CLAUDE.md)

**/*.py: Always place Python imports at the top of the file, not inside functions or methods
Use Ruff for formatting and linting with configuration in pyproject.toml
Type hints required (mypy configuration in pyproject.toml)
Pre-commit hooks enforce quality checks on Python files

Files:

  • holmes/core/tool_calling_llm.py
  • tests/core/test_tool_approval_restriction.py
  • holmes/core/tools.py
  • holmes/core/tools_utils/tool_executor.py
tests/**/*.py

📄 CodeRabbit inference engine (CLAUDE.md)

tests/**/*.py: Tests should match source structure under tests/
Live execution is now enabled by default to ensure tests match real-world behavior

Files:

  • tests/core/test_tool_approval_restriction.py
🧠 Learnings (11)
📓 Common learnings
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: New toolsets require integration tests
📚 Learning: 2025-12-21T13:17:57.170Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: holmes/plugins/runbooks/CLAUDE.md:0-0
Timestamp: 2025-12-21T13:17:57.170Z
Learning: Applies to holmes/plugins/runbooks/**/*.md : Use generic function descriptions in workflow steps (e.g., 'execute a command to test network connectivity') rather than tool-specific names to enable mapping to available tools

Applied to files:

  • holmes/plugins/prompts/_general_instructions.jinja2
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Bash toolset validates commands for safety

Applied to files:

  • holmes/plugins/prompts/_general_instructions.jinja2
  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: New toolsets require integration tests

Applied to files:

  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Custom toolsets for eval tests: Create separate toolsets.yaml file, never put toolset config in test_case.yaml

Applied to files:

  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Toolset config in eval tests must go under config field: toolsets.toolset_name.enabled.config

Applied to files:

  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Implement simple Pydantic config class with validation for Python toolsets

Applied to files:

  • tests/core/test_tool_approval_restriction.py
  • holmes/core/tools.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Maintain backwards compatibility in toolset config using Pydantic's extra='allow' when renaming config fields

Applied to files:

  • holmes/core/tools.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Only define current field names in toolset config schema with extra='allow' to avoid polluting model_dump() output with deprecated fields

Applied to files:

  • holmes/core/tools.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Each tool in Python toolsets should be a thin wrapper around a single API endpoint

Applied to files:

  • holmes/core/tools.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Include health check in prerequisites_callable() method for Python toolsets

Applied to files:

  • holmes/core/tools.py
🧬 Code graph analysis (2)
holmes/core/tool_calling_llm.py (2)
holmes/core/tools_utils/tool_executor.py (1)
  • get_all_tools_openai_format (54-73)
holmes/core/tools.py (2)
  • invoke (252-295)
  • StructuredToolResultStatus (54-78)
holmes/core/tools_utils/tool_executor.py (1)
holmes/core/tools.py (2)
  • _is_restricted (314-328)
  • get_openai_format (239-250)
🪛 Ruff (0.14.10)
tests/core/test_tool_approval_restriction.py

37-37: Unused method argument: context

(ARG002)


52-52: Unused method argument: params

(ARG002)


52-52: Unused method argument: context

(ARG002)


59-59: Unused method argument: context

(ARG002)


66-66: Unused method argument: params

(ARG002)


74-74: Unused method argument: context

(ARG002)


83-83: Unused method argument: context

(ARG002)


250-250: Unused method argument: base_context

(ARG002)


275-275: Unused method argument: base_context

(ARG002)


298-298: Unused method argument: base_context

(ARG002)

holmes/core/tools.py

367-367: Unused method argument: params

(ARG002)


367-367: Unused method argument: context

(ARG002)

⏰ Context from checks skipped due to timeout of 90000ms. You can increase the timeout in your CodeRabbit configuration to a maximum of 15 minutes (900000ms). (4)
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  • GitHub Check: build (3.11)
🔇 Additional comments (15)
tests/core/test_tool_approval_restriction.py (2)

34-126: LGTM! Well-designed test fixtures.

The test fixtures provide a clean foundation for testing approval and restriction mechanisms. The test tool implementations (SimpleTool, ApprovalRequiredTool, ConditionalApprovalTool) clearly demonstrate different approval scenarios.


133-704: LGTM! Comprehensive test coverage.

The test suite thoroughly covers:

  • Model validation (ApprovalRequirement, RestrictionResult)
  • Tool-level and toolset-level approval/restriction logic
  • Pattern matching for configuration
  • Invocation-time approval checks
  • List-level restriction filtering
  • Combined scenarios (restricted + approval)
  • OpenAI format modifications
  • Edge cases (empty patterns, wildcards)

This provides strong confidence in the implementation.

holmes/core/tools_utils/tool_executor.py (1)

54-73: LGTM! Clean implementation of restriction filtering.

The include_restricted parameter and filtering logic are well-implemented. The docstring clearly explains when to include restricted tools (when runbook is in use or restricted tools are explicitly enabled), which aligns with the PR objectives.

holmes/plugins/prompts/_general_instructions.jinja2 (1)

73-76: LGTM! Clear and concise approval guidance.

The Tool Approval section provides clear guidance that reassures users that approval prompts are normal and expected for potentially destructive operations. The instruction to "go ahead and call it" helps prevent hesitation that could disrupt the investigation flow.

holmes/core/tool_calling_llm.py (4)

178-189: LGTM! Clean state management for conversation-level restrictions.

The per-conversation state tracking (_runbook_in_use, _restricted_tools_enabled) with corresponding reset and setter methods provides a clean API for managing tool restrictions throughout the conversation lifecycle.

Note: reset_conversation_state() intentionally doesn't reset _restricted_tools_enabled since it's set per-request, which is the correct behavior.


310-319: LGTM! Clear helper methods for tool filtering.

The _should_include_restricted_tools() and _get_tools() helper methods provide a clean abstraction for determining which tools to include based on runbook usage and explicit enablement. This separation of concerns makes the logic easy to understand and test.


498-506: LGTM! Dynamic tool list refresh after runbook activation.

The logic to re-fetch the tools list when a runbook is activated is well-implemented. The length comparison ensures we only log and update when the list actually changes, and the log message provides clear feedback about what happened.

This same pattern is correctly replicated in call_stream() at lines 999-1006.


540-552: LGTM! Proper tracking of runbook usage.

The runbook activation tracking is correctly placed after successful tool invocation. Checking both the tool name (fetch_runbook) and the success status ensures that only successful runbook fetches enable restricted tools.

The propagation of restriction flags through ToolInvokeContext (lines 540-541) ensures downstream tool logic has access to the conversation state.

holmes/core/tools.py (7)

110-122: LGTM! Well-defined models for approval and restriction results.

The ApprovalRequirement and RestrictionResult models provide clear, type-safe representations of approval and restriction checks. The default empty string for reason is appropriate for cases where no explanation is needed.


175-177: LGTM! Clear context propagation for restriction state.

The addition of restricted_tools_enabled and runbook_in_use flags to ToolInvokeContext ensures that tool invocation logic has access to the conversation-level restriction state. The field comments clearly explain the distinction between explicit enablement and runbook-driven enablement.


239-250: LGTM! Clear visual indicator for restricted tools.

Adding the [RESTRICTED] prefix to tool descriptions in OpenAI format provides a clear visual indicator when restricted tools are included in the tools list. This is helpful for debugging and understanding which tools are restricted.


262-276: LGTM! Proper approval enforcement at invocation time.

The approval check is correctly placed:

  1. Only checks when user_approved is False (skips redundant checks)
  2. Checks approval requirement before invocation
  3. Returns APPROVAL_REQUIRED status with the reason
  4. Includes the invocation string for user review

Note: The comment "Restriction is enforced at the tools list level, not here" correctly reflects the design decision that restriction filtering happens when building the tools list, not at invocation time.


314-328: LGTM! Comprehensive restriction checking with pattern matching.

The _is_restricted() method correctly checks both:

  1. Tool-level restricted flag
  2. Toolset-level restricted_tools patterns

Using fnmatch for pattern matching is appropriate and allows flexible configuration (e.g., kubectl_delete_*).


330-375: LGTM! Well-structured approval checking with clear separation of concerns.

The approval checking is cleanly separated into three methods:

  1. _get_approval_requirement() - Orchestrates the check (toolset config first, then tool-specific)
  2. _check_approval_config() - Handles toolset-level configuration (pattern matching, global flag)
  3. requires_approval() - Hook for tool-specific logic (can be overridden)

This design allows both declarative (toolset config) and imperative (tool-specific logic) approval requirements, which is flexible and powerful.

The static analysis warning about unused parameters in requires_approval() is a false positive - this is an intentional hook method that subclasses override.


678-690: LGTM! Comprehensive toolset-level restriction and approval configuration.

The three new fields provide flexible control:

  • restricted_tools - Pattern-based tool restriction
  • approval_required_tools - Pattern-based approval requirements
  • require_approval_for_all_tools - Global approval flag

The field descriptions clearly explain the behavior, and the use of Field with default factories ensures proper initialization.

1. ToolsetYamlFromConfig - Added missing fields:
   - restricted_tools
   - approval_required_tools
   - require_approval_for_all_tools

   These need to be explicitly declared so Pydantic recognizes them
   when parsing YAML and includes them in model_dump() for the
   override_with() method to work correctly with builtin toolsets.

2. Test 195 (restricted_tool_blocked):
   - Updated expected output to reflect filtering behavior
   - With filtering, LLM won't see the tool at all, so it can't
     report "blocked" - it just won't have a logs tool available

3. Test 196 (restricted_tool_via_runbook):
   - Fixed runbook catalog format by adding required update_date field

Signed-off-by: Claude <noreply@anthropic.com>

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Actionable comments posted: 1

🤖 Fix all issues with AI agents
In
@tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml:
- Around line 7-25: In the retry loop that checks pod readiness (the for i in
{1..12} loop using the POD_READY flag), replace the sleep 5 with sleep 1 to
reduce wait between attempts, and update the timeout message "❌ Pod not ready
after 60s" to "❌ Pod not ready after 12s" so the reported total wait matches the
new sleep interval (or alternatively adjust the retry count if you want to
preserve the 60s total).
🧹 Nitpick comments (1)
holmes/core/tools.py (1)

366-375: Consider underscore prefix for intentionally unused parameters.

The requires_approval method signature includes params and context parameters that are intentionally unused (meant to be used by overriding subclasses). Python convention suggests using underscore prefixes for such parameters.

🔧 Optional refactor
     def requires_approval(
-        self, params: Dict, context: ToolInvokeContext
+        self, _params: Dict, _context: ToolInvokeContext
     ) -> Optional[ApprovalRequirement]:
         """Override to implement tool-specific approval logic.
 
         Returns:
             None - No approval logic (default behavior)
             ApprovalRequirement - Whether approval is needed and why
         """
         return None

This makes the intent clearer and silences static analysis warnings.

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Reviewing files that changed from the base of the PR and between 64b3f54 and d7ce44a.

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  • holmes/core/tools.py
  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/test_case.yaml
🚧 Files skipped from review as they are similar to previous changes (1)
  • tests/llm/fixtures/test_ask_holmes/196_restricted_tool_via_runbook/test_case.yaml
🧰 Additional context used
📓 Path-based instructions (5)
**/*.py

📄 CodeRabbit inference engine (CLAUDE.md)

**/*.py: Always place Python imports at the top of the file, not inside functions or methods
Use Ruff for formatting and linting with configuration in pyproject.toml
Type hints required (mypy configuration in pyproject.toml)
Pre-commit hooks enforce quality checks on Python files

Files:

  • holmes/core/tools.py
tests/llm/**/*.{py,yaml}

📄 CodeRabbit inference engine (CLAUDE.md)

All pod names must be unique across tests (never reuse pod names between tests)

Files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
tests/llm/**/*.yaml

📄 CodeRabbit inference engine (CLAUDE.md)

tests/llm/**/*.yaml: Never use resource names that hint at the problem or expected behavior in evals (avoid broken-pod, test-project-that-does-not-exist, crashloop-app)
Only use valid tags from pyproject.toml for LLM tests - invalid tags cause test collection failures
Use exit 1 when setup verification fails to fail the test early
Poll real API endpoints and check for expected content in setup verification, don't just test pod readiness
Use kubectl exec over port forwarding for setup verification to avoid port conflicts
Use sleep 1 instead of sleep 5 for retry loops, remove unnecessary sleeps, reduce timeout values (60s for pod readiness, 30s for API verification)
Use retry loops for kubectl wait to handle race conditions, don't use bare kubectl wait immediately after resource creation
Use realistic logs in eval tests, not fake/obvious logs like 'Memory usage stabilized at 800MB'
Use realistic filenames in eval tests, not hints like 'disk_consumer.py' - use names like 'training_pipeline.py'
Use real-world scenarios in eval tests (ML pipelines with checkpoint issues, database connection pools) not simulated scenarios

Files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
tests/llm/fixtures/test_ask_holmes/**/*.yaml

📄 CodeRabbit inference engine (CLAUDE.md)

Use sequential test numbers for eval tests, checking existing tests for next available number

Files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
tests/llm/fixtures/**/*.yaml

📄 CodeRabbit inference engine (CLAUDE.md)

tests/llm/fixtures/**/*.yaml: Required files for eval tests: test_case.yaml, infrastructure manifests, and toolsets.yaml (if needed)
Use Secrets for scripts in eval test manifests, not inline manifests or ConfigMaps
Never use :latest container tags - use specific versions like grafana/grafana:12.3.1
Be specific in expected_output - test exact values like title or unique injected values, not generic patterns
Match user prompt to test - prompt must explicitly request what you're testing
Don't use technical terms that give away solutions in user prompts - use anti-cheat prompts that prevent domain knowledge shortcuts
Test discovery and analysis ability, not recognition - Holmes should search/analyze, not guess from context
Use include_tool_calls: true to verify tool was called when output values are too generic to rule out hallucinations
Use neutral, application-specific names in eval resources instead of obvious technical terms to prevent domain knowledge cheats
Avoid hint-giving resource names - use realistic business context (checkout-api, user-service, inventory-db) not obvious problem indicators (broken-pod, payment-service-1)
Implement full architecture in eval tests even if complex (use Loki for log aggregation, proper separation of concerns) with minimal resource footprints
Add source comments in eval test manifests for anti-cheat: 'Uses Node Exporter dashboard but renamed to prevent cheats'
Custom runbooks in eval tests: Add runbooks field in test_case.yaml (use runbooks: {} for empty catalog)
Custom toolsets for eval tests: Create separate toolsets.yaml file, never put toolset config in test_case.yaml
Toolset config in eval tests must go under config field: toolsets.toolset_name.enabled.config

Files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
🧠 Learnings (18)
📓 Common learnings
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: New toolsets require integration tests
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Maintain backwards compatibility in toolset config using Pydantic's extra='allow' when renaming config fields

Applied to files:

  • holmes/core/tools.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Only define current field names in toolset config schema with extra='allow' to avoid polluting model_dump() output with deprecated fields

Applied to files:

  • holmes/core/tools.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Implement simple Pydantic config class with validation for Python toolsets

Applied to files:

  • holmes/core/tools.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Required files for eval tests: test_case.yaml, infrastructure manifests, and toolsets.yaml (if needed)

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Use include_tool_calls: true to verify tool was called when output values are too generic to rule out hallucinations

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Custom toolsets for eval tests: Create separate toolsets.yaml file, never put toolset config in test_case.yaml

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Add source comments in eval test manifests for anti-cheat: 'Uses Node Exporter dashboard but renamed to prevent cheats'

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Match user prompt to test - prompt must explicitly request what you're testing

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Test discovery and analysis ability, not recognition - Holmes should search/analyze, not guess from context

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
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Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Implement full architecture in eval tests even if complex (use Loki for log aggregation, proper separation of concerns) with minimal resource footprints

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  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Toolset config in eval tests must go under config field: toolsets.toolset_name.enabled.config

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
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Learning: Applies to tests/llm/fixtures/**/*.yaml : Be specific in expected_output - test exact values like title or unique injected values, not generic patterns

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📚 Learning: 2026-01-05T11:14:20.222Z
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Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/test_ask_holmes/**/*.yaml : Use sequential test numbers for eval tests, checking existing tests for next available number

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
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Learning: Applies to tests/llm/**/*.yaml : Use sleep 1 instead of sleep 5 for retry loops, remove unnecessary sleeps, reduce timeout values (60s for pod readiness, 30s for API verification)

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  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/**/*.yaml : Use retry loops for kubectl wait to handle race conditions, don't use bare kubectl wait immediately after resource creation

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  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
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Repo: HolmesGPT/holmesgpt PR: 0
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Learning: Applies to holmes/plugins/toolsets/**/kubernetes*.py : RBAC permissions are respected for Kubernetes access

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  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
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Learning: Applies to tests/llm/**/*.yaml : Never use resource names that hint at the problem or expected behavior in evals (avoid broken-pod, test-project-that-does-not-exist, crashloop-app)

Applied to files:

  • tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml
🪛 Ruff (0.14.10)
holmes/core/tools.py

367-367: Unused method argument: params

(ARG002)


367-367: Unused method argument: context

(ARG002)

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🔇 Additional comments (9)
holmes/core/tools.py (9)

110-122: LGTM: Clean model definitions.

The ApprovalRequirement and RestrictionResult models are well-structured with clear field names and appropriate docstrings.


175-177: LGTM: Context fields properly added.

The new context fields clearly track restriction state with appropriate defaults and documentation.


193-196: LGTM: Restricted field properly defined.

The restricted field is correctly configured with an informative description.


239-250: LGTM: OpenAI format correctly updated.

The [RESTRICTED] prefix implementation is clean and uses the appropriate helper method to determine restriction status.


262-276: LGTM: Approval check correctly implemented.

The approval logic is properly isolated from restriction checks, with clear comments explaining that restriction enforcement happens at the tools list level. The early return pattern when approval is required is clean and correct.


297-328: LGTM: Restriction checking logic is sound.

The _check_restriction and _is_restricted methods correctly implement the restriction logic using pattern matching via fnmatch. Note that _check_restriction is not called in invoke(), which aligns with the PR's design of enforcing restrictions at the tools list level rather than at invocation time.


330-364: LGTM: Approval checking correctly layered.

The approval logic properly implements a two-tier check: toolset configuration first, then tool-specific logic. The pattern matching for approval_required_tools is correctly implemented.


679-690: LGTM: Toolset restriction/approval fields properly added.

The new fields are correctly configured with appropriate descriptions and default values that make sense for the restriction and approval system.


952-957: LGTM: ToolsetYamlFromConfig fields correctly declared.

The explicit field declarations with the helpful comment correctly address the Pydantic parsing and model_dump() requirements for the override_with() pattern used in toolset configuration.

Comment thread tests/llm/fixtures/test_ask_holmes/195_restricted_tool_blocked/test_case.yaml Outdated
- Add restrict_all_tools: bool field to Toolset and ToolsetYamlFromConfig for
  restricting all tools with a single flag (mirrors require_approval_for_all_tools)
- Update _is_restricted() to check restrict_all_tools flag before patterns
- Add unit tests for:
  - Wildcard '*' pattern in approval_required_tools
  - restrict_all_tools=True flag
  - restrict_all_tools=False default behavior
  - restrict_all_tools overrides empty patterns

Signed-off-by: Claude <noreply@anthropic.com>
Remove boolean flags (restrict_all_tools, require_approval_for_all_tools)
in favor of using "*" wildcard pattern for consistency:
- restricted_tools: ["*"] to restrict all tools
- approval_required_tools: ["*"] to require approval for all tools

This simplifies the API to a single pattern-based approach using fnmatch.

Signed-off-by: Claude <noreply@anthropic.com>

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Actionable comments posted: 1

🤖 Fix all issues with AI agents
In @holmes/core/tools.py:
- Around line 297-312: Remove the dead helper method _check_restriction from the
class: it is never invoked anywhere and only wraps existing logic that calls
_is_restricted(), so delete the entire _check_restriction(self, context:
ToolInvokeContext) -> Optional[RestrictionResult] method (including its
docstring and return paths) and ensure no external references to
_check_restriction remain; keep _is_restricted(), RestrictionResult, and usage
of context.restricted_tools_enabled / context.runbook_in_use intact.
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🧠 Learnings (9)
📓 Common learnings
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: New toolsets require integration tests
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Custom toolsets for eval tests: Create separate toolsets.yaml file, never put toolset config in test_case.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: New toolsets require integration tests

Applied to files:

  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Custom toolsets for eval tests: Create separate toolsets.yaml file, never put toolset config in test_case.yaml

Applied to files:

  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: All new features require unit tests

Applied to files:

  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Toolset config in eval tests must go under config field: toolsets.toolset_name.enabled.config

Applied to files:

  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Implement simple Pydantic config class with validation for Python toolsets

Applied to files:

  • tests/core/test_tool_approval_restriction.py
  • holmes/core/tools.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Bash toolset validates commands for safety

Applied to files:

  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Maintain backwards compatibility in toolset config using Pydantic's extra='allow' when renaming config fields

Applied to files:

  • holmes/core/tools.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Only define current field names in toolset config schema with extra='allow' to avoid polluting model_dump() output with deprecated fields

Applied to files:

  • holmes/core/tools.py
🧬 Code graph analysis (2)
tests/core/test_tool_approval_restriction.py (1)
holmes/core/tools.py (9)
  • ApprovalRequirement (110-114)
  • RestrictionResult (117-121)
  • StructuredToolResult (81-107)
  • StructuredToolResultStatus (54-78)
  • Tool (180-483)
  • Toolset (655-917)
  • _check_approval_config (347-369)
  • _is_restricted (314-333)
  • get_openai_format (239-250)
holmes/core/tools.py (1)
holmes/core/openai_formatting.py (1)
  • format_tool_to_open_ai_standard (70-124)
🪛 Ruff (0.14.10)
tests/core/test_tool_approval_restriction.py

37-37: Unused method argument: context

(ARG002)


52-52: Unused method argument: params

(ARG002)


52-52: Unused method argument: context

(ARG002)


59-59: Unused method argument: context

(ARG002)


66-66: Unused method argument: params

(ARG002)


74-74: Unused method argument: context

(ARG002)


83-83: Unused method argument: context

(ARG002)


250-250: Unused method argument: base_context

(ARG002)


275-275: Unused method argument: base_context

(ARG002)


298-298: Unused method argument: base_context

(ARG002)

holmes/core/tools.py

372-372: Unused method argument: params

(ARG002)


372-372: Unused method argument: context

(ARG002)

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🔇 Additional comments (14)
tests/core/test_tool_approval_restriction.py (7)

1-27: LGTM!

Clear module documentation and appropriate imports for comprehensive approval and restriction testing.


34-126: Test fixtures are well-designed.

The static analysis warnings about unused context and params parameters are false positives. These test tools must implement the abstract Tool interface, which requires these signatures even when specific implementations don't use all parameters.


133-182: LGTM!

Comprehensive tests for the ApprovalRequirement and RestrictionResult models covering all key scenarios.


247-322: Toolset approval configuration tests are comprehensive.

The use of object.__setattr__ to bypass Pydantic validation is necessary given that toolset is accessed dynamically via getattr in the tool methods rather than being a declared model field. This pattern is consistent throughout the test file.

The static analysis warnings about unused base_context are false positives.


368-525: LGTM!

Excellent test coverage of the restriction mechanism. The tests clearly demonstrate that restriction is enforced by filtering tools from the tools list (via include_restricted parameter), not by blocking at invocation time. This design separation is clean and well-tested.


532-603: LGTM!

Excellent coverage of the interaction between approval and restriction mechanisms. The tests correctly verify that these are orthogonal concerns that can be combined, and that user_approved=True bypasses both.


610-797: LGTM!

Comprehensive validation tests covering all configuration scenarios including edge cases like empty patterns, wildcards, and the new restrict_all_tools flag. The test at lines 778-797 correctly verifies that restrict_all_tools=True overrides even empty pattern lists, which is the expected behavior.

holmes/core/tools.py (7)

1-1: LGTM!

Clean addition of fnmatch for pattern matching and well-designed Pydantic models for approval and restriction results.

Also applies to: 110-122


175-177: LGTM!

Appropriate extensions to support restriction enforcement via context flags and per-tool configuration.

Also applies to: 193-196


239-250: LGTM!

Clean implementation of [RESTRICTED] prefix for tool descriptions in OpenAI format. The description is copied before modification, preserving the original.


262-276: LGTM!

Well-structured approval check at invocation time. The early return when user_approved=True is efficient, and the APPROVAL_REQUIRED status with reason provides clear feedback.


314-380: Well-implemented restriction and approval logic.

The methods correctly implement the layered checking approach:

  • _is_restricted: Checks tool flag → toolset flag → patterns (correct precedence)
  • _check_approval_config: Checks all-tools flag → patterns (correct precedence)
  • _get_approval_requirement: Checks toolset config → tool-specific logic (correct precedence)
  • requires_approval: Proper hook method for subclasses to override

The static analysis warning about unused parameters in requires_approval is a false positive—this is an intentional hook method with a default no-op implementation.


683-699: LGTM!

Clean addition of restriction and approval configuration fields to the Toolset model. Proper use of Field with default_factory for lists and clear descriptions for each field.


961-967: LGTM!

Proper declaration of restriction/approval fields in ToolsetYamlFromConfig. The comment correctly explains why these must be explicitly declared—to ensure they're recognized when parsing YAML and included in model_dump() for the override_with() mechanism.

Based on learnings, this follows established patterns for toolset configuration extensibility.

Comment thread holmes/core/tools.py Outdated

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Actionable comments posted: 1

🤖 Fix all issues with AI agents
In @tests/core/test_tool_approval_restriction.py:
- Line 250: Remove the unused fixture parameter base_context from the test
function signatures that declare it (e.g.,
test_approval_required_tools_pattern_match and the other two test methods
referenced in the diff) since the fixture is not used inside those tests; update
each function signature to remove the base_context parameter and ensure no
references to base_context remain in the function body or imports.
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  • tests/core/test_tool_approval_restriction.py
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**/*.py

📄 CodeRabbit inference engine (CLAUDE.md)

**/*.py: Always place Python imports at the top of the file, not inside functions or methods
Use Ruff for formatting and linting with configuration in pyproject.toml
Type hints required (mypy configuration in pyproject.toml)
Pre-commit hooks enforce quality checks on Python files

Files:

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  • tests/core/test_tool_approval_restriction.py
tests/**/*.py

📄 CodeRabbit inference engine (CLAUDE.md)

tests/**/*.py: Tests should match source structure under tests/
Live execution is now enabled by default to ensure tests match real-world behavior

Files:

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🧠 Learnings (10)
📓 Common learnings
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: New toolsets require integration tests
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Custom toolsets for eval tests: Create separate toolsets.yaml file, never put toolset config in test_case.yaml
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Maintain backwards compatibility in toolset config using Pydantic's extra='allow' when renaming config fields

Applied to files:

  • holmes/core/tools.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Only define current field names in toolset config schema with extra='allow' to avoid polluting model_dump() output with deprecated fields

Applied to files:

  • holmes/core/tools.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Implement simple Pydantic config class with validation for Python toolsets

Applied to files:

  • holmes/core/tools.py
  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: New toolsets require integration tests

Applied to files:

  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Custom toolsets for eval tests: Create separate toolsets.yaml file, never put toolset config in test_case.yaml

Applied to files:

  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Required files for eval tests: test_case.yaml, infrastructure manifests, and toolsets.yaml (if needed)

Applied to files:

  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Toolset config in eval tests must go under config field: toolsets.toolset_name.enabled.config

Applied to files:

  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to tests/llm/fixtures/**/*.yaml : Use include_tool_calls: true to verify tool was called when output values are too generic to rule out hallucinations

Applied to files:

  • tests/core/test_tool_approval_restriction.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Bash toolset validates commands for safety

Applied to files:

  • tests/core/test_tool_approval_restriction.py
🧬 Code graph analysis (1)
tests/core/test_tool_approval_restriction.py (3)
holmes/core/tools.py (15)
  • ApprovalRequirement (110-114)
  • RestrictionResult (117-121)
  • StructuredToolResult (81-107)
  • StructuredToolResultStatus (54-78)
  • Tool (180-471)
  • ToolInvokeContext (165-177)
  • Toolset (643-897)
  • _invoke (458-467)
  • _invoke (520-552)
  • get_parameterized_one_liner (470-471)
  • get_parameterized_one_liner (497-504)
  • _check_approval_config (342-357)
  • invoke (252-295)
  • _is_restricted (314-328)
  • get_openai_format (239-250)
holmes/core/llm.py (2)
  • LLM (91-134)
  • get_max_token_count_for_single_tool (104-115)
holmes/core/tools_utils/tool_executor.py (2)
  • ToolExecutor (14-73)
  • get_all_tools_openai_format (54-73)
🪛 Ruff (0.14.10)
holmes/core/tools.py

360-360: Unused method argument: params

(ARG002)


360-360: Unused method argument: context

(ARG002)

tests/core/test_tool_approval_restriction.py

37-37: Unused method argument: context

(ARG002)


52-52: Unused method argument: params

(ARG002)


52-52: Unused method argument: context

(ARG002)


59-59: Unused method argument: context

(ARG002)


66-66: Unused method argument: params

(ARG002)


74-74: Unused method argument: context

(ARG002)


83-83: Unused method argument: context

(ARG002)


250-250: Unused method argument: base_context

(ARG002)


275-275: Unused method argument: base_context

(ARG002)


298-298: Unused method argument: base_context

(ARG002)

⏰ Context from checks skipped due to timeout of 90000ms. You can increase the timeout in your CodeRabbit configuration to a maximum of 15 minutes (900000ms). (3)
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🔇 Additional comments (17)
tests/core/test_tool_approval_restriction.py (4)

1-27: LGTM! Well-structured test module.

The imports are properly organized at the top of the file, following the coding guidelines. The module docstring clearly explains the two orthogonal security mechanisms being tested.


34-126: Well-designed test fixtures.

The test tool implementations (SimpleTool, ApprovalRequiredTool, ConditionalApprovalTool) provide comprehensive coverage of different approval scenarios. The pytest fixtures are appropriately configured.

Note: Ruff flags unused parameters in the fixture classes, but these are required to match the abstract base class signatures and are expected in test implementations.


268-268: Acceptable workaround for testing toolset association.

The use of object.__setattr__(tool, "toolset", toolset) to bypass Pydantic validation is a practical testing pattern. While not ideal, it's necessary to test the toolset-level restriction and approval configuration logic without requiring substantial refactoring.

Also applies to: 293-293, 316-316, 408-408, 430-430, 642-642, 648-648, 656-656, 680-680, 702-702, 728-728


133-732: Excellent test coverage of approval and restriction mechanisms.

The test suite comprehensively covers:

  • Model behavior (ApprovalRequirement, RestrictionResult)
  • Tool-level and toolset-level approval logic
  • Pattern matching including wildcards
  • Invocation flows with and without approval
  • Restriction enforcement and filtering
  • OpenAI format integration
  • Combined scenarios

The tests validate both positive and negative cases, edge cases, and configuration validation. This aligns with the learning that new toolsets require integration tests.

holmes/core/tools.py (13)

1-1: LGTM! Import properly placed.

The fnmatch import is correctly placed at the top of the file for pattern matching in the restriction and approval logic.


110-122: Well-designed approval and restriction models.

The ApprovalRequirement and RestrictionResult models are simple Pydantic data containers with appropriate defaults. The empty string default for reason makes sense for cases where no explanation is needed (e.g., when approval is not required or tool is authorized).


175-177: Clear context fields for restriction enforcement.

The new fields in ToolInvokeContext are well-documented with inline comments explaining their purpose. The restricted_tools_enabled flag provides explicit request-level control, while runbook_in_use indicates runbook authorization state.


193-196: LGTM! Clear restriction flag.

The restricted field on the Tool class has a clear description explaining the authorization requirements.


239-250: Correct [RESTRICTED] prefix implementation.

The modification to get_openai_format properly adds the [RESTRICTED] prefix to tool descriptions before formatting for OpenAI, making restricted tools identifiable in the LLM's tool list.


262-276: Well-implemented approval check at invocation time.

The approval logic correctly:

  • Skips checks when user_approved=True
  • Returns APPROVAL_REQUIRED status with reason when approval is needed
  • Prevents tool execution until approval is granted

The inline comment clarifying that restriction is enforced at the tools list level (not during invocation) is helpful for understanding the architecture.


314-328: Robust restriction checking with pattern matching.

The _is_restricted method correctly:

  • Checks the tool-level restricted flag first
  • Falls back to toolset-level pattern matching using fnmatch
  • Supports wildcards (e.g., "*" for all tools)

This provides flexible restriction configuration at both tool and toolset levels.


330-340: Correct approval priority order.

The _get_approval_requirement method properly prioritizes toolset-level configuration over tool-specific logic, allowing toolset administrators to enforce approval requirements centrally.


342-357: Pattern-based approval configuration works correctly.

The _check_approval_config method properly implements toolset-level approval configuration using fnmatch pattern matching. The reason message includes the matched pattern, which helps users understand why approval is required.


359-368: Appropriate extensibility hook for tool-specific approval.

The requires_approval method provides a clean extension point for tools to implement custom approval logic. The default implementation returns None (no approval needed), which is appropriate.

Note: Ruff flags the unused parameters, but this is a false positive for an extensibility method that subclasses are expected to override.


671-679: Well-documented toolset configuration fields.

The restricted_tools and approval_required_tools fields on the Toolset class are properly configured with:

  • Clear descriptions mentioning pattern support and wildcard usage
  • default_factory=list to avoid mutable default issues
  • Inline comments explaining the pattern-based approach

941-945: Necessary explicit declaration for YAML configuration.

The explicit declaration of restricted_tools and approval_required_tools in ToolsetYamlFromConfig is necessary for correct YAML parsing and the override_with method to work properly. The inline comments clearly explain this requirement.


297-312: Remove the unused _check_restriction method.

This method is defined but never called anywhere in the codebase. Restriction enforcement occurs at the tools list level via ToolExecutor.get_all_tools_openai_format (which filters using _is_restricted), not at invocation time. The invoke method explicitly notes this architectural decision on line 265: "Restriction is enforced at the tools list level, not here." Since _check_restriction has no callers and no test coverage, it should be removed.

Comment thread tests/core/test_tool_approval_restriction.py Outdated
claude and others added 2 commits January 12, 2026 07:15
Remove unit tests and LLM eval tests for tool approval/restriction
functionality as requested.

Signed-off-by: Claude <noreply@anthropic.com>
Signed-off-by: Arik Alon <alon.arik@gmail.com>

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Actionable comments posted: 0

🧹 Nitpick comments (1)
holmes/plugins/toolsets/mcp/toolset_mcp.py (1)

195-199: Logic looks correct; minor edge case with empty args list.

The fallback handles generic MCP tools with args parameters appropriately, and the ordering ensures gcloud-specific formatting takes precedence.

Minor edge case: when args is an empty list, the result will have a trailing space (e.g., "toolname "). Consider stripping or conditionally adding the space.

🔧 Optional fix for trailing space
         if self.name and params and "args" in params:
             args = params.get("args", [])
             if isinstance(args, list):
-                return f"{self.name} {' '.join(str(arg) for arg in args)}"
+                args_str = ' '.join(str(arg) for arg in args)
+                return f"{self.name} {args_str}" if args_str else self.name
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**/*.py

📄 CodeRabbit inference engine (CLAUDE.md)

**/*.py: Always place Python imports at the top of the file, not inside functions or methods
Use Ruff for formatting and linting with configuration in pyproject.toml
Type hints required (mypy configuration in pyproject.toml)
Pre-commit hooks enforce quality checks on Python files

Files:

  • holmes/plugins/toolsets/mcp/toolset_mcp.py
holmes/plugins/toolsets/**/*.{py,yaml}

📄 CodeRabbit inference engine (CLAUDE.md)

holmes/plugins/toolsets/**/*.{py,yaml}: All toolsets MUST return detailed error messages from underlying APIs to enable LLM self-correction, including exact query/command executed, time ranges/parameters/filters used, and full API error response (status code and message)
For 'no data' responses in toolsets, specify what was searched and where
Never return unbounded data from APIs - always include filter parameters on tools that query collections

Files:

  • holmes/plugins/toolsets/mcp/toolset_mcp.py
holmes/plugins/toolsets/**/*.py

📄 CodeRabbit inference engine (CLAUDE.md)

holmes/plugins/toolsets/**/*.py: Use requests library for HTTP calls in Python toolsets, not specialized client libraries like opensearchpy
Implement simple Pydantic config class with validation for Python toolsets
Include health check in prerequisites_callable() method for Python toolsets
Each tool in Python toolsets should be a thin wrapper around a single API endpoint
Use JsonFilterMixin for client-side filtering when server-side filtering is not possible, adding max_depth and jq parameters
Maintain backwards compatibility in toolset config using Pydantic's extra='allow' when renaming config fields
Only define current field names in toolset config schema with extra='allow' to avoid polluting model_dump() output with deprecated fields
Use @model_validator(mode='after') in toolset config to map old field names to new names and log deprecation warnings
Bash toolset validates commands for safety

Files:

  • holmes/plugins/toolsets/mcp/toolset_mcp.py
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  • GitHub Check: llm_evals

The exception handler in bash _invoke() was falling back to executing
the original (potentially unsafe) command when make_command_safe()
raised an exception. This contradicts the security model since
context.user_approved is False at that point.

Now returns an error instead of executing the unvalidated command.

Signed-off-by: Claude <noreply@anthropic.com>
Dead code cleanup - _check_restriction() was never called anywhere,
and RestrictionResult was only used by that method.

Signed-off-by: Claude <noreply@anthropic.com>

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Actionable comments posted: 1

🤖 Fix all issues with AI agents
In @holmes/plugins/toolsets/bash/bash_toolset.py:
- Around line 166-193: The except block in requires_approval uses the deprecated
sentry_sdk.configure_scope() and catches argparse.ArgumentError which
make_command_safe never raises; replace configure_scope usage with
sentry_sdk.get_current_scope(), call scope.set_extra("command", command_str),
scope.set_extra("error", str(e)), scope.set_extra("unsafe_allow_all",
BASH_TOOL_UNSAFE_ALLOW_ALL) and then sentry_sdk.capture_exception(e), and change
the exception clause to only catch ValueError (i.e., except ValueError as e:);
if linter flags the unused context parameter on requires_approval, you can add a
"# noqa: ARG002" to the signature to suppress it.
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  • holmes/plugins/toolsets/bash/bash_toolset.py
🧰 Additional context used
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**/*.py

📄 CodeRabbit inference engine (CLAUDE.md)

**/*.py: Always place Python imports at the top of the file, not inside functions or methods
Use Ruff for formatting and linting with configuration in pyproject.toml
Type hints required (mypy configuration in pyproject.toml)
Pre-commit hooks enforce quality checks on Python files

Files:

  • holmes/plugins/toolsets/bash/bash_toolset.py
holmes/plugins/toolsets/**/*.{py,yaml}

📄 CodeRabbit inference engine (CLAUDE.md)

holmes/plugins/toolsets/**/*.{py,yaml}: All toolsets MUST return detailed error messages from underlying APIs to enable LLM self-correction, including exact query/command executed, time ranges/parameters/filters used, and full API error response (status code and message)
For 'no data' responses in toolsets, specify what was searched and where
Never return unbounded data from APIs - always include filter parameters on tools that query collections

Files:

  • holmes/plugins/toolsets/bash/bash_toolset.py
holmes/plugins/toolsets/**/*.py

📄 CodeRabbit inference engine (CLAUDE.md)

holmes/plugins/toolsets/**/*.py: Use requests library for HTTP calls in Python toolsets, not specialized client libraries like opensearchpy
Implement simple Pydantic config class with validation for Python toolsets
Include health check in prerequisites_callable() method for Python toolsets
Each tool in Python toolsets should be a thin wrapper around a single API endpoint
Use JsonFilterMixin for client-side filtering when server-side filtering is not possible, adding max_depth and jq parameters
Maintain backwards compatibility in toolset config using Pydantic's extra='allow' when renaming config fields
Only define current field names in toolset config schema with extra='allow' to avoid polluting model_dump() output with deprecated fields
Use @model_validator(mode='after') in toolset config to map old field names to new names and log deprecation warnings
Bash toolset validates commands for safety

Files:

  • holmes/plugins/toolsets/bash/bash_toolset.py
🧠 Learnings (5)
📓 Common learnings
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Bash toolset validates commands for safety
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Bash toolset validates commands for safety

Applied to files:

  • holmes/plugins/toolsets/bash/bash_toolset.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Include health check in prerequisites_callable() method for Python toolsets

Applied to files:

  • holmes/plugins/toolsets/bash/bash_toolset.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Each tool in Python toolsets should be a thin wrapper around a single API endpoint

Applied to files:

  • holmes/plugins/toolsets/bash/bash_toolset.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Implement simple Pydantic config class with validation for Python toolsets

Applied to files:

  • holmes/plugins/toolsets/bash/bash_toolset.py
🧬 Code graph analysis (1)
holmes/plugins/toolsets/bash/bash_toolset.py (4)
holmes/core/tools.py (4)
  • ApprovalRequirement (110-114)
  • ToolInvokeContext (165-177)
  • StructuredToolResult (81-107)
  • StructuredToolResultStatus (54-78)
holmes/utils/cache.py (1)
  • get (64-74)
holmes/plugins/toolsets/bash/parse_command.py (2)
  • make_command_safe (152-176)
  • error (62-64)
holmes/plugins/toolsets/git.py (1)
  • error (420-425)
🪛 Ruff (0.14.10)
holmes/plugins/toolsets/bash/bash_toolset.py

167-167: Unused method argument: context

(ARG002)


177-177: Consider moving this statement to an else block

(TRY300)


192-192: Use explicit conversion flag

Replace with conversion flag

(RUF010)

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🔇 Additional comments (2)
holmes/plugins/toolsets/bash/bash_toolset.py (2)

14-24: LGTM!

Import addition is correctly placed at the top of the file and aligns with the new requires_approval method. As per coding guidelines, Python imports should be at the top of the file.


213-228: Security fix looks correct - unsafe commands are now properly rejected.

The changes implement proper defense-in-depth:

  1. User-approved commands execute as-is (bypassing safety transformation)
  2. Non-approved commands go through make_command_safe()
  3. If an unsafe command somehow bypasses requires_approval() (race condition or edge case), it now returns an error instead of executing

This aligns with the PR objective to reject unsafe commands rather than executing them.

Comment thread holmes/plugins/toolsets/bash/bash_toolset.py
Signed-off-by: Claude <noreply@anthropic.com>

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🧹 Nitpick comments (1)
holmes/core/tools.py (1)

254-269: Consider semantic clarity for approval responses.

The approval reason is stored in the error field (line 266), but this isn't really an error - it's a deliberate approval request. While functional, this overloading may cause confusion downstream when processing results.

Consider whether StructuredToolResult should have a dedicated field for approval reasons, or document this convention clearly.

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  • holmes/core/tools.py
🧰 Additional context used
📓 Path-based instructions (1)
**/*.py

📄 CodeRabbit inference engine (CLAUDE.md)

**/*.py: Always place Python imports at the top of the file, not inside functions or methods
Use Ruff for formatting and linting with configuration in pyproject.toml
Type hints required (mypy configuration in pyproject.toml)
Pre-commit hooks enforce quality checks on Python files

Files:

  • holmes/core/tools.py
🧠 Learnings (4)
📓 Common learnings
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Bash toolset validates commands for safety
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Maintain backwards compatibility in toolset config using Pydantic's extra='allow' when renaming config fields

Applied to files:

  • holmes/core/tools.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Only define current field names in toolset config schema with extra='allow' to avoid polluting model_dump() output with deprecated fields

Applied to files:

  • holmes/core/tools.py
📚 Learning: 2026-01-05T11:14:20.222Z
Learnt from: CR
Repo: HolmesGPT/holmesgpt PR: 0
File: CLAUDE.md:0-0
Timestamp: 2026-01-05T11:14:20.222Z
Learning: Applies to holmes/plugins/toolsets/**/*.py : Implement simple Pydantic config class with validation for Python toolsets

Applied to files:

  • holmes/core/tools.py
🪛 Ruff (0.14.10)
holmes/core/tools.py

336-336: Unused method argument: params

(ARG002)


336-336: Unused method argument: context

(ARG002)

⏰ Context from checks skipped due to timeout of 90000ms. You can increase the timeout in your CodeRabbit configuration to a maximum of 15 minutes (900000ms). (3)
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🔇 Additional comments (9)
holmes/core/tools.py (9)

1-1: LGTM!

The fnmatch import is correctly placed at the top of the file and is appropriately used for shell-style pattern matching on tool names in the restriction/approval logic.


110-115: LGTM!

Clean and well-documented model for encapsulating approval state. The default empty reason string is appropriate for cases where no approval is needed.


168-170: LGTM!

The restriction context fields are well-documented. The comment on line 258 clarifies that restriction enforcement happens at the tools list level (in tool_calling_llm.py), while approval checking happens here during invocation.


186-189: LGTM!

The restricted field is well-documented and defaults to False, ensuring backward compatibility with existing tools.


232-243: LGTM!

Good approach to communicate tool restriction status to the LLM by prefixing the description. Using a local variable avoids mutating the instance attribute.


335-344: Hook method signature is appropriate; Ruff warning is a false positive.

The params and context arguments are intentionally part of the method signature for subclasses to override. This is a standard hook pattern where the base implementation doesn't use the parameters but derived classes may.

The Ruff ARG002 warnings can be safely ignored here, or you could add # noqa: ARG002 if you want to suppress the linter noise.


647-655: LGTM!

Well-documented configuration fields with sensible defaults. The pattern-based approach (supporting * for all tools) provides good flexibility for toolset-level restriction and approval policies.


917-921: LGTM!

The explicit field declarations are necessary for proper YAML parsing and override_with() propagation. The inline comment clearly documents the rationale.


290-304: Revert this suggestion—the current design is intentional and correct.

The toolset attribute intentionally is not declared on the base Tool class. Subclasses that need a toolset reference explicitly declare it (e.g., BaseKafkaTool, RemoteMCPTool) with Field(exclude=True) to prevent circular reference issues during serialization. The getattr() pattern is a deliberate defensive fallback for optional parent references, not a fragile anti-pattern.

Declaring toolset on the base class would introduce serialization failures for tools that reference their parent toolset, requiring Field(exclude=True) on every subclass that uses it—a more error-prone pattern. The current design correctly avoids polluting model_dump() output and prevents circular references, as validated by existing tests.

…d_tools

Signed-off-by: Claude <noreply@anthropic.com>
@arikalon1
arikalon1 requested a review from Sheeproid January 12, 2026 11:25
@arikalon1
arikalon1 enabled auto-merge (squash) January 15, 2026 17:13
@arikalon1
arikalon1 merged commit 674a2c0 into master Jan 15, 2026
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arikalon1 deleted the claude/tool-approval-all-tools-lMWXe branch January 15, 2026 17:25
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