v1.2.2

• hotfix (#78)

v1.2.1

• fixed named wildcards in s/p modes (#76)
• updated to Viola-SV v1.0.2

v1.2.0

• integrated Viola-SV into the post-processing step to harmonize SV types (#75)

v1.1.3

• fixed filtering of somatic SV types in DELLY (#68)
• updated testing infra
  • Travis CI -> GitHub Actions (#55)
  • Docker Hub -> GitHub Container Registry (#71)

v1.1.2

• update Xenon CLI (v3.0.5): fixed Slurm 19 issue (#40)
• speed up conda install (#49)

v1.1.1

• added environment.yaml to install initial dependencies via Conda
  • updated Xenon CLI (v3.0.4): --cores-per-task {threads} replaces --procs-per-node {threads} and --start-single-process args
  • included jq JSON processor to query job accounting output by Xenon CLI (optional)
• updated Docker images with batch schedulers for CI testing
• fixed file error handling and unit tests

Version 1.1.0

• enabled both single-sample (germline) and paired-sample (somatic) SV analyses
• added post-processing steps (i.e., SV quality filtering and/or excluding regions with problematic mappability)
• updated Xenon CLI (v3.0.0) and included optional use of temporary disk space
• added Docker images with batch schedulers for CI testing
• bug fixes

Version 1.0.0

• initial release supporting SV detection in paired tumor/normal samples