symlink error building from jboss/base-jdk:8

[Bashton-MattBuckland]

Actual behavior
When I run this:

docker run -v ${PWD}:/workspace -w /workspace -it gcr.io/kaniko-project/executor:v0.3.0 -d .

I get this:

INFO[0000] appending to multi args .
INFO[0000] Downloading base image jboss/base-jdk:8
2018/09/13 13:21:16 No matching credentials were found, falling back on anonymous
INFO[0002] Mounted directories: [/kaniko /var/run /proc /dev /dev/pts /sys /sys/fs/cgroup /sys/fs/cgroup/systemd /sys/fs/cgroup/devices /sys/fs/cgroup/net_cls,net_prio /sys/fs/cgroup/rdma /sys/fs/cgroup/cpuset /sys/fs/cgroup/perf_event /sys/fs/cgroup/memory /sys/fs/cgroup/freezer /sys/fs/cgroup/pids /sys/fs/cgroup/cpu,cpuacct /sys/fs/cgroup/hugetlb /sys/fs/cgroup/blkio /dev/mqueue /workspace /etc/resolv.conf /etc/hostname /etc/hosts /dev/shm /dev/console /proc/bus /proc/fs /proc/irq /proc/sys /proc/sysrq-trigger /proc/kcore /proc/keys /proc/timer_list /proc/sched_debug /proc/scsi /sys/firmware]
INFO[0003] Unpacking layer: 3
INFO[0024] Unpacking layer: 2
INFO[0025] Not adding /etc because it was added by a prior layer
INFO[0025] Not adding /var because it was added by a prior layer
INFO[0025] Not adding /var/log because it was added by a prior layer
INFO[0025] Unpacking layer: 1
INFO[0026] Not adding /etc because it was added by a prior layer
INFO[0026] Not adding /etc/X11 because it was added by a prior layer
INFO[0026] Not adding /etc/alternatives because it was added by a prior layer
INFO[0026] Not adding /etc/ld.so.cache because it was added by a prior layer
INFO[0026] Not adding /run because it was added by a prior layer
INFO[0026] Not adding /tmp because it was added by a prior layer
INFO[0026] Not adding /usr because it was added by a prior layer
INFO[0026] Not adding /usr/bin because it was added by a prior layer
INFO[0027] Not adding /usr/lib because it was added by a prior layer
INFO[0027] Not adding /usr/lib/jvm because it was added by a prior layer
INFO[0027] Not adding /usr/lib/jvm-exports because it was added by a prior layer
INFO[0027] Not adding /usr/lib/jvm-private because it was added by a prior layer
INFO[0028] Not adding /usr/lib64 because it was added by a prior layer
INFO[0029] Not adding /usr/lib64/pkgconfig because it was added by a prior layer
INFO[0029] Not adding /usr/share because it was added by a prior layer
INFO[0030] Not adding /usr/share/licenses because it was added by a prior layer
INFO[0030] Not adding /var because it was added by a prior layer
INFO[0030] Not adding /var/cache because it was added by a prior layer
INFO[0030] Not adding /var/cache/ldconfig because it was added by a prior layer
INFO[0030] Not adding /var/cache/ldconfig/aux-cache because it was added by a prior layer
INFO[0030] Not adding /var/cache/yum because it was added by a prior layer
INFO[0030] Not adding /var/cache/yum/x86_64 because it was added by a prior layer
INFO[0030] Not adding /var/cache/yum/x86_64/7 because it was added by a prior layer
INFO[0030] Not adding /var/cache/yum/x86_64/7/base because it was added by a prior layer
INFO[0030] Not adding /var/cache/yum/x86_64/7/base/gen because it was added by a prior layer
INFO[0030] Not adding /var/cache/yum/x86_64/7/base/packages because it was added by a prior layer
INFO[0030] Not adding /var/cache/yum/x86_64/7/extras because it was added by a prior layer
INFO[0030] Not adding /var/cache/yum/x86_64/7/extras/gen because it was added by a prior layer                                                                                                                       
INFO[0030] Not adding /var/cache/yum/x86_64/7/timedhosts because it was added by a prior layer                                                                                                                       
INFO[0030] Not adding /var/cache/yum/x86_64/7/updates because it was added by a prior layer                                                                                                                          
INFO[0030] Not adding /var/cache/yum/x86_64/7/updates/gen because it was added by a prior layer                                                                                                                      
INFO[0030] Not adding /var/cache/yum/x86_64/7/updates/packages because it was added by a prior layer                                                                                                                 
INFO[0030] Not adding /var/lib because it was added by a prior layer                                                                                                                                                 
INFO[0030] Not adding /var/lib/alternatives because it was added by a prior layer                                                                                                                                    
INFO[0030] Not adding /var/lib/rpm because it was added by a prior layer                                                                                                                                             
INFO[0030] Not adding /var/lib/rpm/.dbenv.lock because it was added by a prior layer                                                                                                                                 
INFO[0030] Not adding /var/lib/rpm/.rpm.lock because it was added by a prior layer                                                                                                                                   
INFO[0030] Not adding /var/lib/rpm/Basenames because it was added by a prior layer                                                                                                                                   
INFO[0030] Not adding /var/lib/rpm/Conflictname because it was added by a prior layer                                                                                                                                
INFO[0030] Not adding /var/lib/rpm/Dirnames because it was added by a prior layer                                                                                                                                    
INFO[0030] Not adding /var/lib/rpm/Group because it was added by a prior layer                                                                                                                                       
INFO[0030] Not adding /var/lib/rpm/Installtid because it was added by a prior layer                                                                                                                                  
INFO[0030] Not adding /var/lib/rpm/Name because it was added by a prior layer                                                                                                                                        
INFO[0030] Not adding /var/lib/rpm/Obsoletename because it was added by a prior layer                                                                                                                                
INFO[0030] Not adding /var/lib/rpm/Packages because it was added by a prior layer                                                                                                                                    
INFO[0031] Not adding /var/lib/rpm/Providename because it was added by a prior layer                                                                                                                                 
INFO[0031] Not adding /var/lib/rpm/Requirename because it was added by a prior layer                                                                                                                                 
INFO[0031] Not adding /var/lib/rpm/Sha1header because it was added by a prior layer                                                                                                                                  
INFO[0031] Not adding /var/lib/rpm/Sigmd5 because it was added by a prior layer                                                                                                                                      
INFO[0031] Not adding /var/lib/rpm/Triggername because it was added by a prior layer                                                                                                                                 
INFO[0031] Not adding /var/lib/rpm/__db.001 because it was added by a prior layer
INFO[0031] Not adding /var/lib/rpm/__db.002 because it was added by a prior layer
INFO[0031] Not adding /var/lib/rpm/__db.003 because it was added by a prior layer
INFO[0031] Not adding /var/lib/yum because it was added by a prior layer
INFO[0031] Not adding /var/lib/yum/history because it was added by a prior layer
INFO[0031] Not adding /var/lib/yum/history/2018-08-04 because it was added by a prior layer
INFO[0031] Not adding /var/lib/yum/history/history-2018-08-04.sqlite because it was added by a prior layer
INFO[0031] Not adding /var/lib/yum/history/history-2018-08-04.sqlite-journal because it was added by a prior layer
INFO[0031] Not adding /var/lib/yum/rpmdb-indexes because it was added by a prior layer
INFO[0031] Not adding /var/lib/yum/yumdb because it was added by a prior layer
INFO[0031] Not adding /var/lib/yum/yumdb/a because it was added by a prior layer
INFO[0031] Whiting out /var/lib/yum/yumdb/a/.wh.26cb720a7995364140e82e072b2171e73d64759c-audit-libs-2.8.1-3.el7-x86_64
INFO[0031] Not adding /var/lib/yum/yumdb/c because it was added by a prior layer
INFO[0031] Whiting out /var/lib/yum/yumdb/c/.wh.db0ee635726608d6adf5d6ee221d94da9a1099ed-centos-release-7-5.1804.1.el7.centos-x86_64
INFO[0031] Whiting out /var/lib/yum/yumdb/d/.wh.7b4fac8cf83258849b225b361e88a08038ec1c66-dracut-033-535.el7-x86_64
INFO[0031] Not adding /var/lib/yum/yumdb/j because it was added by a prior layer
INFO[0031] Whiting out /var/lib/yum/yumdb/k/.wh.c151735f4bbcf02cb1352d96e93d14fd1a4cbcf4-kpartx-0.4.9-119.el7-x86_64
INFO[0031] Not adding /var/lib/yum/yumdb/l because it was added by a prior layer
INFO[0031] Whiting out /var/lib/yum/yumdb/l/.wh.03ddbf27e282109446e1bd381274f3f1898cd93e-libmount-2.23.2-52.el7-x86_64
INFO[0031] Whiting out /var/lib/yum/yumdb/l/.wh.5660b1b845680df2ef85a581b9f128507e38e1d1-libblkid-2.23.2-52.el7-x86_64
INFO[0031] Whiting out /var/lib/yum/yumdb/l/.wh.66918175747959bd5ad315a26449d377339ece4a-libuuid-2.23.2-52.el7-x86_64
INFO[0031] Not adding /var/lib/yum/yumdb/s because it was added by a prior layer
INFO[0031] Whiting out /var/lib/yum/yumdb/s/.wh.8f7d02746558cdd1ed90e3036c56fe9f8e1316dc-systemd-libs-219-57.el7-x86_64
INFO[0031] Whiting out /var/lib/yum/yumdb/s/.wh.fd0bbd2160a727720f89526b50238fe0ec65ddbf-systemd-219-57.el7-x86_64
INFO[0031] Whiting out /var/lib/yum/yumdb/u/.wh.d047f1f3114da9025f56e5e9f0e8259bf354ea38-util-linux-2.23.2-52.el7-x86_64
INFO[0031] Not adding /var/log because it was added by a prior layer
INFO[0031] Not adding /var/log/lastlog because it was added by a prior layer
INFO[0031] Not adding /var/log/yum.log because it was added by a prior layer
INFO[0031] Not adding /var/tmp because it was added by a prior layer
INFO[0031] Unpacking layer: 0
INFO[0031] Not adding /dev because it is whitelisted
INFO[0031] Not adding /etc because it was added by a prior layer
INFO[0031] Not adding /etc/.pwd.lock because it was added by a prior layer
INFO[0031] Not adding /etc/X11 because it was added by a prior layer
INFO[0031] Not adding /etc/X11/fontpath.d because it was added by a prior layer
INFO[0031] Not adding /etc/X11/xorg.conf.d because it was added by a prior layer
INFO[0031] Not adding /etc/alternatives because it was added by a prior layer
INFO[0031] Not adding /etc/binfmt.d because it was added by a prior layer
INFO[0031] Not adding /etc/centos-release because it was added by a prior layer
INFO[0031] Not adding /etc/centos-release-upstream because it was added by a prior layer
INFO[0031] Not adding /etc/dbus-1 because it was added by a prior layer
INFO[0031] Not adding /etc/dbus-1/system.d because it was added by a prior layer
INFO[0031] Not adding /etc/dbus-1/system.d/org.freedesktop.hostname1.conf because it was added by a prior layer
INFO[0031] Not adding /etc/dbus-1/system.d/org.freedesktop.import1.conf because it was added by a prior layer
INFO[0031] Not adding /etc/dbus-1/system.d/org.freedesktop.locale1.conf because it was added by a prior layer
INFO[0031] Not adding /etc/dbus-1/system.d/org.freedesktop.login1.conf because it was added by a prior layer
INFO[0031] Not adding /etc/dbus-1/system.d/org.freedesktop.machine1.conf because it was added by a prior layer
INFO[0031] Not adding /etc/dbus-1/system.d/org.freedesktop.systemd1.conf because it was added by a prior layer
INFO[0031] Not adding /etc/dbus-1/system.d/org.freedesktop.timedate1.conf because it was added by a prior layer
INFO[0031] Not adding /etc/dracut.conf because it was added by a prior layer
INFO[0031] Not adding /etc/dracut.conf.d because it was added by a prior layer
INFO[0031] Not adding /etc/group because it was added by a prior layer
INFO[0031] Not adding /etc/group- because it was added by a prior layer
INFO[0031] Not adding /etc/gshadow because it was added by a prior layer
INFO[0031] Not adding /etc/gshadow- because it was added by a prior layer
INFO[0031] Not adding /etc/hosts because it is whitelisted
INFO[0031] Not adding /etc/issue because it was added by a prior layer
INFO[0031] Not adding /etc/issue.net because it was added by a prior layer
INFO[0031] Not adding /etc/ld.so.cache because it was added by a prior layer
INFO[0031] Not adding /etc/libaudit.conf because it was added by a prior layer
INFO[0031] Not adding /etc/machine-id because it was added by a prior layer
INFO[0031] Not adding /etc/modules-load.d because it was added by a prior layer
ERRO[0031] symlink ../proc/self/mounts /etc/mtab: file exists

My pwd contains a Dockerfile with the following contents:

FROM jboss/base-jdk:8

I have also tried with :latest, but that gives up even sooner and gives me a usage error for some reason:

Status: Downloaded newer image for gcr.io/kaniko-project/executor:latest
INFO[0000] appending to multi args .
INFO[0000] Downloading base image jboss/base-jdk:8
2018/09/13 13:34:37 No matching credentials were found, falling back on anonymous
INFO[0003] Mounted directories: [/kaniko /var/run /etc/mtab /proc /dev /dev/pts /sys /sys/fs/cgroup /sys/fs/cgroup/systemd /sys/fs/cgroup/devices /sys/fs/cgroup/net_cls,net_prio /sys/fs/cgroup/rdma /sys/fs/cgroup/cpuset /sys/fs/cgroup/perf_event /sys/fs/cgroup/memory /sys/fs/cgroup/freezer /sys/fs/cgroup/pids /sys/fs/cgroup/cpu,cpuacct /sys/fs/cgroup/hugetlb /sys/fs/cgroup/blkio /dev/mqueue /workspace /etc/resolv.conf /etc/hostname /etc/hosts /dev/shm /dev/console /proc/bus /proc/fs /proc/irq /proc/sys /proc/sysrq-trigger /proc/kcore /proc/keys /proc/timer_list /proc/sched_debug /proc/scsi /sys/firmware]
INFO[0003] Extracting layer 0
INFO[0019] Extracting layer 1
INFO[0024] Extracting layer 2
INFO[0025] Extracting layer 3
Error: error building image: error building stage: link /var/lib/yum/yumdb/a/3e307aa89e8d2e11e2884b65d33506ab8eadd5a7-alsa-lib-1.1.4.1-2.el7-x86_64/checksum_type /var/lib/yum/yumdb/l/0d8cb5db55731bd5ca02afc97a0b214f8bdd246c-libcap-ng-0.7.5-4.el7-x86_64/checksum_type: file exists
Usage:
  executor [flags]

Flags:
      --azure-container-registry-config string   Path to the file containing Azure container registry configuration information.
      --build-arg multi-arg type                 This flag allows you to pass in ARG values at build time. Set it repeatedly for multiple values.
  -c, --context string                           Path to the dockerfile build context. (default "/workspace/")
  -d, --destination multi-arg type               Registry the final image should be pushed to. Set it repeatedly for multiple destinations. (default )
  -f, --dockerfile string                        Path to the dockerfile to be built. (default "Dockerfile")
      --force                                    Force building outside of a container
  -h, --help                                     help for executor
      --insecure                                 Push to insecure registry using plain HTTP
      --no-push                                  Do not push the image to the registry
      --reproducible                             Strip timestamps out of the image to make it reproducible
      --single-snapshot                          Take a single snapshot at the end of the build.
      --skip-tls-verify                          Push to insecure registry ignoring TLS verify
      --snapshotMode string                      Change the file attributes inspected during snapshotting (default "full")
      --tarPath string                           Path to save the image in as a tarball instead of pushing
      --target string                            Set the target build stage to build
  -v, --verbosity string                         Log level (debug, info, warn, error, fatal, panic (default "info")

Expected behavior

Run with no errors.

To Reproduce
Steps to reproduce the behavior:

1. Create Dockerfile with above content
2. Run command as above

Additional Information

• Dockerfile
  See above
• Build Context
  See above
• Kaniko Image (fully qualified with digest)
  For v0.3.0: sha256:6324339a98d9074e9edfdb1798a7768b10866e273c257706cb5290ddf24d82cc
  For latest: sha256:42b4dd2a4651a300005bcaf23a0af74aaf25046c212f9c9556b4baeeda8985e5

[Bashton-MattBuckland]

Ooh, looks related to this commit, so perhaps it's fixed?

63cecbf

[priyawadhwa]

@Bashton-MattBuckland , yah it looks like it should be solved by that commit! Could you give it a go with the latest version of the image (gcr.io/kaniko-project/executor:debug)

[xanonid]

The link bug with :latest is probably the same as in #351 and should be solved as soon as #360 is merged.

[rroller]

I can confirm that #360 corrects the issue below... (I've tested it with one of my builds and it works fine now)

INFO[0000] Downloading base image gcr.io/google-appengine/openjdk:8 
INFO[0000] Mounted directories: [/kaniko /var/run /etc/mtab /proc /dev /dev/pts /sys /sys/fs/cgroup /sys/fs/cgroup/systemd /sys/fs/cgroup/cpuset /sys/fs/cgroup/blkio /sys/fs/cgroup/freezer /sys/fs/cgroup/cpu,cpuacct /sys/fs/cgroup/devices /sys/fs/cgroup/pids /sys/fs/cgroup/rdma /sys/fs/cgroup/memory /sys/fs/cgroup/net_cls,net_prio /sys/fs/cgroup/perf_event /sys/fs/cgroup/hugetlb /dev/mqueue /source /containers /dev/termination-log /etc/resolv.conf /etc/hostname /etc/hosts /dev/shm /run/secrets/kubernetes.io/serviceaccount /proc/bus /proc/fs /proc/irq /proc/sys /proc/sysrq-trigger /proc/kcore /proc/timer_list /sys/firmware] 
INFO[0000] Extracting layer 0                           
error building image: error building stage: link /bin/gunzip /bin/uncompress: file exists