os env based parameters for the alphafold pipeline were not loaded after changing them in the notebook #66
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…the env variables. Otherwise this won't be reflected in the pipeline compilation.
…hen importing config. Not a pretty fix but it works.
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I adjusted the main notebook and the pipeline package to fix this. It probably needs more work to really do this well, using env variables like this seems a bit clunky but it would take quite some effort to fix this.