Configure Renovate

[renovate-bot]

Welcome to Renovate! This is an onboarding PR to help you understand and configure settings before regular Pull Requests begin.

🚦 To activate Renovate, merge this Pull Request. To disable Renovate, simply close this Pull Request unmerged.

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Detected Package Files

• Alphafold.dockerfile (dockerfile)
• Alphafold1_cuda1111.dockerfile (dockerfile)
• Alphafold_portal.dockerfile (dockerfile)
• src/frontend/package.json (npm)
• requirements.txt (pip_requirements)
• src/backend/requirements.txt (pip_requirements)
• env-setup-portal/main.tf (terraform)
• env-setup-portal/versions.tf (terraform)
• env-setup/versions.tf (terraform)

Configuration Summary

Based on the default config's presets, Renovate will:

• Start dependency updates only once this onboarding PR is merged
• Hopefully safe environment variables to allow users to configure.
• Show all Merge Confidence badges for pull requests.
• Enable Renovate Dependency Dashboard creation.
• Use semantic commit type fix for dependencies and chore for all others if semantic commits are in use.
• Ignore node_modules, bower_components, vendor and various test/tests (except for nuget) directories.
• Group known monorepo packages together.
• Use curated list of recommended non-monorepo package groupings.
• Apply crowd-sourced package replacement rules.
• Apply crowd-sourced workarounds for known problems with packages.

🔡 Do you want to change how Renovate upgrades your dependencies? Add your custom config to renovate.json in this branch. Renovate will update the Pull Request description the next time it runs.

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What to Expect

With your current configuration, Renovate will create 48 Pull Requests:

chore(deps): update dependency flask-cors to v4.0.2 [security]

• Branch name: renovate/pypi-flask-cors-vulnerability
• Merge into: main
• Upgrade Flask-Cors to ==4.0.2

chore(deps): update dependency jinja2 to v3.1.6 [security]

• Branch name: renovate/pypi-jinja2-vulnerability
• Merge into: main
• Upgrade Jinja2 to ==3.1.6

chore(deps): update dependency urllib3 to v1.26.19 [security]

• Branch name: renovate/pypi-urllib3-vulnerability
• Merge into: main
• Upgrade urllib3 to ==1.26.19

chore(deps): update dependency vite to v4.5.6 [security]

• Branch name: renovate/npm-vite-vulnerability
• Merge into: main
• Upgrade vite to 4.5.6

chore(deps): update dependency authlib to v1.3.1 [security]

• Branch name: renovate/pypi-authlib-vulnerability
• Merge into: main
• Upgrade Authlib to ==1.3.1

chore(deps): update dependency requests to v2.32.2 [security]

• Branch name: renovate/pypi-requests-vulnerability
• Merge into: main
• Upgrade requests to ==2.32.2

fix(deps): update dependency axios to v1.8.2 [security]

• Branch name: renovate/npm-axios-vulnerability
• Merge into: main
• Upgrade axios to 1.8.2

chore(deps): update dependency gunicorn to v22 [security]

• Branch name: renovate/pypi-gunicorn-vulnerability
• Merge into: main
• Upgrade gunicorn to ==22.0.0

chore(deps): update dependency werkzeug to v3 [security]

• Branch name: renovate/pypi-werkzeug-vulnerability
• Merge into: main
• Upgrade Werkzeug to ==3.0.6

chore(deps): update dependency eslint-plugin-react-refresh to v0.4.19

• Schedule: ["at any time"]
• Branch name: renovate/eslint-plugin-react-refresh-0.x-lockfile
• Merge into: main
• Upgrade eslint-plugin-react-refresh to 0.4.19

chore(deps): update dependency google-cloud-pipeline-components to v1.0.45

• Schedule: ["at any time"]
• Branch name: renovate/google-cloud-pipeline-components-1.x
• Merge into: main
• Upgrade google-cloud-pipeline-components to ==1.0.45

fix(deps): update dependency jose to v4.15.9

• Schedule: ["at any time"]
• Branch name: renovate/jose-4.x-lockfile
• Merge into: main
• Upgrade jose to 4.15.9

chore(deps): update dependency @​vitejs/plugin-react to v4.3.4

• Schedule: ["at any time"]
• Branch name: renovate/vitejs-plugin-react-4.x-lockfile
• Merge into: main
• Upgrade @vitejs/plugin-react to 4.3.4

chore(deps): update dependency biopython to v1.85

• Schedule: ["at any time"]
• Branch name: renovate/biopython-1.x
• Merge into: main
• Upgrade biopython to ==1.85

chore(deps): update dependency eslint to v8.57.1

• Schedule: ["at any time"]
• Branch name: renovate/eslint-monorepo
• Merge into: main
• Upgrade eslint to 8.57.1

chore(deps): update dependency flask to v2.3.3

• Schedule: ["at any time"]
• Branch name: renovate/flask-2.x
• Merge into: main
• Upgrade Flask to ==2.3.3

chore(deps): update dependency google-cloud-aiplatform to v1.85.0

• Schedule: ["at any time"]
• Branch name: renovate/google-cloud-aiplatform-1.x
• Merge into: main
• Upgrade google-cloud-aiplatform to ==1.85.0

chore(deps): update dependency google-cloud-common to v1.5.1

• Schedule: ["at any time"]
• Branch name: renovate/google-cloud-common-1.x
• Merge into: main
• Upgrade google-cloud-common to ==1.5.1

chore(deps): update dependency google-cloud-filestore to v1.13.1

• Schedule: ["at any time"]
• Branch name: renovate/google-cloud-filestore-1.x
• Merge into: main
• Upgrade google-cloud-filestore to ==1.13.1

chore(deps): update dependency google-cloud-notebooks to v1.13.2

• Schedule: ["at any time"]
• Branch name: renovate/google-cloud-notebooks-1.x
• Merge into: main
• Upgrade google-cloud-notebooks to ==1.13.2

chore(deps): update dependency kfp-pipeline-spec to v0.6.0

• Schedule: ["at any time"]
• Branch name: renovate/kfp-pipeline-spec-0.x
• Merge into: main
• Upgrade kfp-pipeline-spec to ==0.6.0

chore(deps): update dependency prettier to v3.5.3

• Schedule: ["at any time"]
• Branch name: renovate/prettier-3.x-lockfile
• Merge into: main
• Upgrade prettier to 3.5.3

chore(deps): update dependency pygeos to v0.14

• Schedule: ["at any time"]
• Branch name: renovate/pygeos-0.x
• Merge into: main
• Upgrade pygeos to ==0.14

chore(deps): update dependency typescript to v5.8.2

• Schedule: ["at any time"]
• Branch name: renovate/typescript-5.x-lockfile
• Merge into: main
• Upgrade typescript to 5.8.2

chore(deps): update nvidia/cuda docker tag to v11.8.0

• Schedule: ["at any time"]
• Branch name: renovate/nvidia-cuda-11.x
• Merge into: main
• Upgrade nvidia/cuda to 11.8.0-cudnn8-runtime-ubuntu18.04

chore(deps): update python docker tag to v3.13

• Schedule: ["at any time"]
• Branch name: renovate/python-3.x
• Merge into: main
• Upgrade python to 3.13-slim

chore(deps): update typescript-eslint monorepo to v6.21.0

• Schedule: ["at any time"]
• Branch name: renovate/typescript-eslint-monorepo
• Merge into: main
• Upgrade @typescript-eslint/eslint-plugin to 6.21.0
• Upgrade @typescript-eslint/parser to 6.21.0

fix(deps): update dependency dotenv to v16.4.7

• Schedule: ["at any time"]
• Branch name: renovate/dotenv-16.x-lockfile
• Merge into: main
• Upgrade dotenv to 16.4.7

fix(deps): update dependency material-react-table to v2.13.3

• Schedule: ["at any time"]
• Branch name: renovate/material-react-table-2.x-lockfile
• Merge into: main
• Upgrade material-react-table to 2.13.3

fix(deps): update emotion monorepo to v11.14.0

• Schedule: ["at any time"]
• Branch name: renovate/emotion-monorepo
• Merge into: main
• Upgrade @emotion/react to 11.14.0
• Upgrade @emotion/styled to 11.14.0

fix(deps): update material-ui monorepo

• Schedule: ["at any time"]
• Branch name: renovate/material-ui-monorepo
• Merge into: main
• Upgrade @mui/icons-material to 5.17.1
• Upgrade @mui/material to 5.17.1
• Upgrade @mui/styles to 5.17.1
• Upgrade @mui/x-date-pickers to 6.20.2

fix(deps): update react monorepo

• Schedule: ["at any time"]
• Branch name: renovate/react-monorepo
• Merge into: main
• Upgrade @types/react to 18.3.19
• Upgrade @types/react-dom to 18.3.5
• Upgrade eslint-plugin-react-hooks to 4.6.2
• Upgrade react to 18.3.1
• Upgrade react-dom to 18.3.1

chore(deps): update dependency eslint to v9

• Schedule: ["at any time"]
• Branch name: renovate/major-eslint-monorepo
• Merge into: main
• Upgrade eslint to ^9.0.0

chore(deps): update dependency flask to v3

• Schedule: ["at any time"]
• Branch name: renovate/flask-3.x
• Merge into: main
• Upgrade Flask to ==3.1.0

chore(deps): update dependency geopandas to v1

• Schedule: ["at any time"]
• Branch name: renovate/geopandas-1.x
• Merge into: main
• Upgrade geopandas to ==1.0.1

chore(deps): update dependency google-cloud-pipeline-components to v2

• Schedule: ["at any time"]
• Branch name: renovate/google-cloud-pipeline-components-2.x
• Merge into: main
• Upgrade google-cloud-pipeline-components to ==2.19.0

chore(deps): update dependency kfp to v2

• Schedule: ["at any time"]
• Branch name: renovate/kfp-2.x
• Merge into: main
• Upgrade kfp to ==2.12.1

chore(deps): update dependency kfp-server-api to v2

• Schedule: ["at any time"]
• Branch name: renovate/kfp-server-api-2.x
• Merge into: main
• Upgrade kfp-server-api to ==2.4.0

chore(deps): update dependency kubernetes to v32

• Schedule: ["at any time"]
• Branch name: renovate/kubernetes-32.x
• Merge into: main
• Upgrade kubernetes to ==32.0.1

chore(deps): update dependency shapely to v2

• Schedule: ["at any time"]
• Branch name: renovate/shapely-2.x
• Merge into: main
• Upgrade shapely to ==2.0.7

chore(deps): update node.js to v22

• Schedule: ["at any time"]
• Branch name: renovate/node-22.x
• Merge into: main
• Upgrade node to 22

chore(deps): update nvidia/cuda docker tag to v12

• Schedule: ["at any time"]
• Branch name: renovate/nvidia-cuda-12.x
• Merge into: main
• Upgrade nvidia/cuda to 12.0.1-cudnn8-runtime-ubuntu18.04

chore(deps): update terraform google to v6

• Schedule: ["at any time"]
• Branch name: renovate/google-6.x
• Merge into: main
• Upgrade google to ~> 6.0

chore(deps): update typescript-eslint monorepo to v8 (major)

• Schedule: ["at any time"]
• Branch name: renovate/major-typescript-eslint-monorepo
• Merge into: main
• Upgrade @typescript-eslint/eslint-plugin to ^8.0.0
• Upgrade @typescript-eslint/parser to ^8.0.0

fix(deps): update dependency jose to v6

• Schedule: ["at any time"]
• Branch name: renovate/jose-6.x
• Merge into: main
• Upgrade jose to ^6.0.0

fix(deps): update dependency material-react-table to v3

• Schedule: ["at any time"]
• Branch name: renovate/material-react-table-3.x
• Merge into: main
• Upgrade material-react-table to ^3.0.0

fix(deps): update material-ui monorepo (major)

• Schedule: ["at any time"]
• Branch name: renovate/major-material-ui-monorepo
• Merge into: main
• Upgrade @mui/icons-material to ^6.0.0
• Upgrade @mui/material to ^6.0.0
• Upgrade @mui/styles to ^6.0.0
• Upgrade @mui/x-date-pickers to ^7.0.0

fix(deps): update react monorepo (major)

• Schedule: ["at any time"]
• Branch name: renovate/major-react-monorepo
• Merge into: main
• Upgrade @types/react to ^19.0.0
• Upgrade @types/react-dom to ^19.0.0
• Upgrade eslint-plugin-react-hooks to ^5.0.0
• Upgrade react to ^19.0.0
• Upgrade react-dom to ^19.0.0

🚸 Branch creation will be limited to maximum 2 per hour, so it doesn't swamp any CI resources or overwhelm the project. See docs for prhourlylimit for details.

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❓ Got questions? Check out Renovate's Docs, particularly the Getting Started section.
If you need any further assistance then you can also request help here.

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