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1. equifold equifold Public

   Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation

   Python 120 17

2. scimilarity scimilarity Public

   A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.

   Python 181 5

3. polygraph polygraph Public

   Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.

   Jupyter Notebook 28

4. gReLU gReLU Public

   gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

   Python 251 30

5. Islander Islander Public

   Jupyter Notebook 111 21

6. walk-jump walk-jump Public

   Official repository for discrete Walk-Jump Sampling (dWJS)

   Python 52 8