Sig lab template

README.md

@@ -1,2 +1,3 @@
-# Lab_testing
-Testing of configurations of Galaxy Lab yamls
+# SIG Lab Template
+Template for Galaxy Community SIGs Lab building.
+Intended to be served live

lab_test.yml → SIG-LAB-temp.yml

@@ -7,15 +7,15 @@
 # Use these variables in HTML templates like:
 # "Welcome to the Galaxy {{ site_name }} {{ lab_name }}"
 # To make the content more generic and reusable across sites
-site_name: Australia
-lab_name: Wendi and Gareth take over Galaxy Labs
-nationality: Australian
+site_name: Galaxy CoDex
+lab_name: Galaxy Community Hub - Special Interest Groups - Galaxy Lab Template
+nationality: Global
 galaxy_base_url: https://genome.usegalaxy.org.au  # Use for rendering tool/workflow URLs. Trailing '/' will be removed.
-subdomain: genome
+subdomain: template
 root_domain: usegalaxy.org.au
 
 # Custom content relative to this file URL
-header_logo: static/logo_single_cell.svg
+header_logo: static/your-logo-here-placeholder-symbol-vector.png
 custom_css: static/custom.css
 intro_html: templates/intro.html
 conclusion_html: templates/conclusion.html
@@ -27,6 +27,6 @@ footer_html: templates/footer.html
 #   1. Relative to this file URL
 #   2. Full URL to fetch globally centralized content
 sections:
-  - data.yml
-  - count.yml
-  - annotation.yml
+  - section2.yml
+  - section1.yml
+  - section3.yml

section1.yml

@@ -0,0 +1,50 @@
+id: section
+title: 3 menu section
+tabs:
+  - id: tools
+    title: Tools
+    heading_html: >
+      Common tools are listed here, or can be search for more in the full tool panel to the left.
+    content:
+      - title_html: <code>Tool1</code> - tool 1
+        description_html: >
+          <p>
+            Text explaining tool 1.
+          </p>
+        inputs:
+          - datatypes:
+              - example1
+              - example2
+      #  button_link: "{{ galaxy_base_url }}/tool_runner?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fdevteam%2Ffastqc%2Ffastqc"
+      - title_html: <code>Tool2</code> - tool 2
+        description_html: >
+          <p>
+            Text explaining tool 2.
+          </p>
+  - id: workflows
+    title: Workflows
+    heading_html: >
+      A workflow is a series of Galaxy tools that have been linked together to perform a specific analysis. You can use and customize the example workflows below.
+      <a href="https://galaxyproject.org/learn/advanced-workflow/" target="_blank">Learn more.</a>
+    content:
+      - title_html: Sub-section1
+        description_html: >
+          <p>
+            Sub-section1. <br> <br> Tools: <code>1st tool</code> <code>2nd tool</code> <code>3rd and more</code>
+          </p>
+      #  button_link: "{{ galaxy_base_url }}/workflows/trs_import?trs_server=workflowhub.eu&run_form=true&trs_id=222"
+      #  view_link: https://workflowhub.eu/workflows/222
+        view_tip: View in WorkflowHub
+        button_tip: Import to Galaxy 
+
+  - id: help
+    title: Help
+    content:
+      - title_html: How can I do my analysis in Galaxy?
+        description_html: >
+          <p>
+            You do analysis by the following X, Y and Z.
+          </p>
+        button_html: More info
+        button_link: https://training.galaxyproject.org/training-material/topics/galaxy-interface/
+

section2.yml

@@ -0,0 +1,15 @@
+id: section2
+title: Simple section
+tabs:
+  - id: section2
+    title: Simple
+    heading_html: >
+      Introduction text goes here.
+    content:
+         - title_html: Simple explanation
+           description_html: >
+                <p>
+                  This is text, button, tool link, URL or widget.
+                </p>     
+
+

annotation.yml → section3.yml

@@ -1,5 +1,5 @@
 id: annotation
-title: Genome annotation
+title: Complex section - TBD
 tabs:
   - id: tools
     title: Tools