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Issues: Gaius-Augustus/BRAKER

ERROR No query file specified
#446 opened Dec 2, 2021 by jonnyPizza
Open 9
BRAKER on Conda Cloud
#22 opened Feb 15, 2019 by LironShv
Open 32
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134 Open 666 Closed
134 Open 666 Closed
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Issues list

Failed to execute: /opt/Augustus/bin//etraining Could not locate command line parameters file:
#874 opened Oct 11, 2024 by tallnuttrbgv
4
fix_in_frame_stop_codon_genes.py crashes on line 701
#873 opened Oct 9, 2024 by rainmanv84
1
regarding softmasking
#872 opened Oct 9, 2024 by vbhardwaj3010
BRAKER gft score
#871 opened Oct 9, 2024 by vbhardwaj3010
Provide stringtie output directly to braker3
#870 opened Oct 8, 2024 by allind
Error with Singularity image
#869 opened Oct 8, 2024 by lucaskbobadilla
2
Hisat mapping
#868 opened Oct 8, 2024 by aureliendejode
Internal UTR features were found after decorating UTR by stringtie2utr.py
#867 opened Oct 4, 2024 by xo2003
How can I specify the number of CPU cores to use when running AUGUSTUS for ab initio gene prediction?
#866 opened Oct 3, 2024 by Vijithkumar2020
Failed to execute: tsebra.py
#864 opened Sep 28, 2024 by GLking123
Using Iso-seq data for Braker annotation
#863 opened Sep 23, 2024 by Upendra19993
8
Does BRAKER3 support the annotation of chromosomes larger than 2 million base pairs?
#862 opened Sep 22, 2024 by octpalacios
1
error, output file is empty data/ep.gff
#861 opened Sep 20, 2024 by gladjabo
1
Very comprehensive assessment！
#860 opened Sep 20, 2024 by ZhangPY-bioinformatics
2
Exon models look good, but gene models are far too large
#859 opened Sep 18, 2024 by jtoy7
3
Failed to execute /usr/bin//etraining
#856 opened Sep 11, 2024 by gladjabo
1
GeneMark-ETP didn't receive enough evidence from the input data, in this case
#851 opened Aug 22, 2024 by xuyinnnan
1
Genemark ETP issue with fungus option: failed to execute... gmes_petap.pl
#850 opened Aug 14, 2024 by ngreatens
No output results from AUGUSTUS
#848 opened Jul 24, 2024 by JMUwenjian
Continue BRAKER due to timeout
#846 opened Jul 17, 2024 by m4558
Failed to create directory Augustus!
#845 opened Jul 16, 2024 by RezwanCAAS
Adding training genes?
#844 opened Jul 15, 2024 by Artifice120
2
Braker failing on some chromosomes but not others
#843 opened Jun 30, 2024 by amsession
Very satisfying annotations ... Except for one species
#842 opened Jun 28, 2024 by vpymerel
3
Continue a failed run?
#841 opened Jun 27, 2024 by Artifice120
2
ProTip! Find all open issues with in progress development work with linked:pr.