Update clinical_risk_management_plan.md #11
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| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Production tests | |
| on: | |
| push: | |
| branches: | |
| - 'main' | |
| - 'master' | |
| - 'release/*' | |
| env: | |
| PROJECT_NAME: template # the project name | |
| APPLICATION_DIR: project # the name of the main directory that contains the project code | |
| TEST_DIR: tests # the name of the directory that contains the tests | |
| COV_GIST_BADGEID: COV_GIST_BADGEID # this github repo secret should define a gist token see https://github.com/Schneegans/dynamic-badges-action | |
| COV_GIST_NAME: COV_GIST_NAME # this github repo secret should contain the filename of the gist see https://github.com/Schneegans/dynamic-badges-action | |
| jobs: | |
| build-and-test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: checkout | |
| uses: actions/checkout@v2 | |
| - name: Build and tag image | |
| run: docker build -t $PROJECT_NAME:latest . | |
| - name: Setup flake8 annotations | |
| uses: rbialon/flake8-annotations@v1 | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| docker run --mount type=bind,source=$(pwd),target=/$APPLICATION_DIR $PROJECT_NAME flake8 /$APPLICATION_DIR --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| docker run --mount type=bind,source=$(pwd),target=/$APPLICATION_DIR $PROJECT_NAME flake8 /$APPLICATION_DIR --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| coverage run -m --source=project pytest --junitxml=pytest.xml --cov-report=term-missing:skip-covered --cov=$APPLICATION_DIR $TEST_DIR/ | tee pytest-coverage.txt | |
| - name: Pytest coverage comment | |
| id: coverageComment | |
| uses: MishaKav/pytest-coverage-comment@main | |
| with: | |
| pytest-coverage-path: ./pytest-coverage.txt | |
| junitxml-path: ./pytest.xml | |
| - name: Create coverage Badge | |
| uses: schneegans/[email protected] | |
| with: | |
| auth: ${{ secrets.PYTEST_COVERAGE_COMMENT }} | |
| gistID: COV_GIST_BADGEID | |
| filename: $COV_GIST_NAME | |
| label: Test coverage | |
| message: ${{ steps.coverageComment.outputs.coverage }} | |
| color: ${{ steps.coverageComment.outputs.color }} | |
| namedLogo: python |