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WalkthroughBumps Miniforge to 25.3.1-0, moves rasterio to Conda, adds contextily and ecmwf-opendata to explicit installs, removes an sqlite pin, installs TensorFlow unconditionally, updates CHANGELOG, and adds a new PyTorch example test. Changes
Sequence Diagram(s)sequenceDiagram
autonumber
participant DevRun as Installer
participant Miniforge as Miniforge/Conda
participant Pip as pip
DevRun->>Miniforge: install Miniforge (25.3.1-0)
DevRun->>Miniforge: conda install rasterio, other conda pkgs
DevRun->>Pip: pip install contextily, ecmwf-opendata, tensorflow, other pip pkgs
Pip-->>DevRun: install results (success/fail)
Miniforge-->>DevRun: install results (success/fail)
Estimated code review effort🎯 3 (Moderate) | ⏱️ ~20 minutes Possibly related PRs
Pre-merge checks and finishing touches❌ Failed checks (2 warnings)
✅ Passed checks (3 passed)
✨ Finishing touches
🧪 Generate unit tests
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🔇 Additional comments (11)
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Actionable comments posted: 4
🧹 Nitpick comments (5)
CHANGELOG.md (2)
29-29: Terminology: it’s an example, not a test.CHANGELOG says “Add new pytorch test,” but the file is a runnable example (no assertions) named torch_example.py. Suggest “Add new PyTorch example.”
33-34: Polish phrasing and capitalization.Suggest: “Remove SQLite pin; IPython no longer needs it.”
tests/torch_example.py (3)
7-9: Make example deterministic.Set a manual seed for reproducibility so logs don’t vary across runs.
dtype = torch.float device = torch.device("cpu") # device = torch.device("cuda:0") # Uncomment this to run on GPU +torch.manual_seed(0)
21-43: Safer parameter updates.Wrap updates in torch.no_grad() to avoid autograd bookkeeping if someone later flips requires_grad.
-for t in range(2000): +for t in range(2000): # Forward pass: compute predicted y y_pred = a + b * x + c * x ** 2 + d * x ** 3 @@ - # Update weights using gradient descent - a -= learning_rate * grad_a - b -= learning_rate * grad_b - c -= learning_rate * grad_c - d -= learning_rate * grad_d + # Update weights using gradient descent + with torch.no_grad(): + a -= learning_rate * grad_a + b -= learning_rate * grad_b + c -= learning_rate * grad_c + d -= learning_rate * grad_d
1-46: Optional: convert to a pytest test or guard execution.If this should be a test, add assertions (e.g., loss decreases) and rename to test_torch_example.py. If it’s an example, add a main guard so import doesn’t run it.
Example guard:
-# -*- coding: utf-8 -*- +# -*- coding: utf-8 -*- @@ -print(f'Result: y = {a.item()} + {b.item()} x + {c.item()} x^2 + {d.item()} x^3') +if __name__ == "__main__": + print(f'Result: y = {a.item()} + {b.item()} x + {c.item()} x^2 + {d.item()} x^3')
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CHANGELOG.md
[grammar] ~18-~18: There might be a mistake here.
Context: ...- Rename always_circular_stereo.py to cartopy_example.py - Enable TensorFlow installation for Pytho...
(QB_NEW_EN)
[grammar] ~24-~24: There might be a mistake here.
Context: ...13 ### Added - Explicit Conda Packages - contextily - Explicit Pip Packages - n...
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[grammar] ~25-~25: There might be a mistake here.
Context: ...- Explicit Conda Packages - contextily - Explicit Pip Packages - nco - cdo - ...
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[grammar] ~26-~26: There might be a mistake here.
Context: ...s - contextily - Explicit Pip Packages - nco - cdo - Add new pytorch test ### ...
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[grammar] ~27-~27: There might be a mistake here.
Context: ...ntextily - Explicit Pip Packages - nco - cdo - Add new pytorch test ### Removed ...
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[grammar] ~28-~28: There might be a mistake here.
Context: ... - Explicit Pip Packages - nco - cdo - Add new pytorch test ### Removed - Rem...
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🔇 Additional comments (2)
CHANGELOG.md (1)
19-20: Clarify TF Py3.13 support and platform nuance.TensorFlow now publishes cp313 wheels (Linux x86_64/aarch64, macOS arm64, Windows), so enabling on Python 3.13 is correct. Note macOS x86_64 remains unsupported (last x86_64 macOS was 2.16). Suggest noting “where wheels are available.”
Suggested wording:
- “Enable TensorFlow installation for Python 3.13 (wheels now available on PyPI for Linux x86_64/aarch64, macOS arm64, and Windows).”
Sources: PyPI file listings and install docs. (pypi.org, tensorflow.org)install_miniforge.bash (1)
76-76: Align example Miniforge version with changelog and upstream.Either bump this to 25.3.1-0 in CHANGELOG (preferred) or adjust here if you intend 25.3.1-3. Today’s latest is 25.3.1-0.
Apply (only if you intend to reflect -3 everywhere, otherwise keep -0 and adjust CHANGELOG):
-EXAMPLE_MINI_VERSION="25.3.1-0" +EXAMPLE_MINI_VERSION="25.3.1-3"Upstream release info. (newreleases.io)
Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>
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Actionable comments posted: 1
♻️ Duplicate comments (1)
CHANGELOG.md (1)
24-25: Add rasterio via conda to avoid GDAL ABI mismatches; fix list punctuation.contextily depends on rasterio; mixing conda GDAL with pip rasterio is fragile. Install rasterio from conda and drop any pip rasterio. Also add colons after the list headers for readability.
Suggested edits:
- Explicit Conda Packages - - contextily + Explicit Conda Packages: + - contextily + - rasterio - Explicit Pip Packages + Explicit Pip Packages:Repo checks:
#!/bin/bash # Ensure we don't install rasterio via pip anywhere rg -n -i 'pip\s+install\s+.*rasterio' || true # Ensure we do install rasterio via conda/mamba/micromamba rg -n -i '(conda|mamba|micromamba).*(install|create).*-y.*rasterio' || true
🧹 Nitpick comments (1)
CHANGELOG.md (1)
29-29: Capitalize brand: PyTorch.Minor wording fix.
- Add new pytorch test + Add new PyTorch test
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CHANGELOG.md(1 hunks)
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CHANGELOG.md
[grammar] ~18-~18: There might be a mistake here.
Context: ...- Rename always_circular_stereo.py to cartopy_example.py - Enable TensorFlow installation for Pytho...
(QB_NEW_EN)
[grammar] ~24-~24: There might be a mistake here.
Context: ...13 ### Added - Explicit Conda Packages - contextily - Explicit Pip Packages - n...
(QB_NEW_EN)
[grammar] ~25-~25: There might be a mistake here.
Context: ...- Explicit Conda Packages - contextily - Explicit Pip Packages - nco - cdo - ...
(QB_NEW_EN)
[grammar] ~26-~26: There might be a mistake here.
Context: ...s - contextily - Explicit Pip Packages - nco - cdo - Add new pytorch test ### ...
(QB_NEW_EN)
[grammar] ~27-~27: There might be a mistake here.
Context: ...ntextily - Explicit Pip Packages - nco - cdo - Add new pytorch test ### Removed ...
(QB_NEW_EN)
[grammar] ~28-~28: There might be a mistake here.
Context: ... - Explicit Pip Packages - nco - cdo - Add new pytorch test ### Removed - Rem...
(QB_NEW_EN)
🔇 Additional comments (2)
CHANGELOG.md (2)
14-14: Miniforge version note now matches installer.This addresses the earlier mismatch; good to go.
33-34: Verify sqlite pin removal and document fallback
- CHANGELOG.md: remove the leftover “Pin
sqliteto version 3.48.0” entry at line 52.- CHANGELOG.md (lines 33–34): add a troubleshooting note under the removal entry explaining how to re-pin sqlite to 3.48.0 if
ipythonregressions reappear.- Confirm CI runs
ipythonstartup tests on Linux and macOS without any sqlite pin.
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⚠️ Outside diff range comments (1)
install_miniforge.bash (1)
554-554: Critical: quoting bug breaks hvplot pin.The current token reads as hvplot">=0.11.0". It should be hvplot>=0.11.0 (quoted or unquoted). This line will fail package resolution.
-$PACKAGE_INSTALL movingpandas geoviews hvplot">=0.11.0" geopandas bokeh +$PACKAGE_INSTALL movingpandas geoviews "hvplot>=0.11.0" geopandas bokeh
♻️ Duplicate comments (3)
CHANGELOG.md (1)
19-22: Qualify TensorFlow 3.13 support with minimum version and date.Please specify the minimum TF version that adds cp313 wheels (2.20.0, released Aug 13, 2025) and that wheels exist for Linux x86_64/aarch64, macOS arm64, and Windows. This prevents accidental installs of older TF on 3.13.
Apply:
-- Enable TensorFlow installation for Python 3.13 - - This is now possible as TensorFlow has been updated to support Python 3.13 +- Enable TensorFlow installation for Python 3.13 + - TensorFlow 2.20.0+ (released 2025-08-13) provides CPython 3.13 wheels + for Linux x86_64/aarch64, macOS arm64, and Windows.References: PyPI release 2.20.0 (includes cp313 wheels and classifier), TF pip install guide. (pypi.org, tensorflow.org)
install_miniforge.bash (2)
606-606: Good: install rasterio with contextily via conda.This avoids mixing pip rasterio wheels with conda-forge GDAL/PROJ.
654-654: Pin TensorFlow to the first version with Python 3.13 wheels.Unpinned “tensorflow” may resolve to versions without cp313 support on some mirrors. Pin to >=2.20.0.
-$PIP_INSTALL tensorflow evidential-deep-learning silence_tensorflow +$PIP_INSTALL "tensorflow>=2.20.0" evidential-deep-learning silence_tensorflowTF 2.20.0 (released 2025-08-13) publishes cp313 wheels for Linux x86_64/aarch64, macOS arm64, and Windows. (pypi.org)
🧹 Nitpick comments (4)
CHANGELOG.md (3)
26-27: Minor formatting: make the subsection header explicit.Add a colon for consistency with other sections.
-- Explicit Conda Packages +- Explicit Conda Packages:
31-31: Capitalize “PyTorch”.Proper noun.
-- Add new pytorch test +- Add new PyTorch test
35-35: Capitalize “SQLite” and “IPython”.Editorial polish.
-- Removed `sqlite` fix as it doesn't seem needed anymore for `ipython` +- Removed `SQLite` fix as it doesn't seem needed anymore for `IPython`install_miniforge.bash (1)
650-650: Optional: move h5py to conda for ABI consistency.Pip wheels for h5py bundle their own HDF5 and can clash with conda-forge netcdf/HDF stacks. Consider installing h5py via conda and dropping it from pip.
Apply within this line:
-$PIP_INSTALL PyRTF3 pipenv pymp-pypi h5py +$PIP_INSTALL PyRTF3 pipenv pymp-pypiAnd add earlier near other conda installs (any suitable group):
$PACKAGE_INSTALL h5py
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🧠 Learnings (1)
📚 Learning: 2025-09-02T17:54:37.361Z
Learnt from: mathomp4
PR: GMAO-SI-Team/GEOSpyD#38
File: install_miniforge.bash:654-654
Timestamp: 2025-09-02T17:54:37.361Z
Learning: The GEOSpyD project does not support Intel Macs (macOS x86_64) anymore, only supporting Linux and macOS arm64 (Apple Silicon).
Applied to files:
install_miniforge.bash
🪛 LanguageTool
CHANGELOG.md
[grammar] ~18-~18: There might be a mistake here.
Context: ...- Rename always_circular_stereo.py to cartopy_example.py - Enable TensorFlow installation for Pytho...
(QB_NEW_EN)
[grammar] ~26-~26: There might be a mistake here.
Context: ...er ### Added - Explicit Conda Packages - contextily - Explicit Pip Packages - n...
(QB_NEW_EN)
[grammar] ~27-~27: There might be a mistake here.
Context: ...- Explicit Conda Packages - contextily - Explicit Pip Packages - nco - cdo - ...
(QB_NEW_EN)
[grammar] ~28-~28: There might be a mistake here.
Context: ...s - contextily - Explicit Pip Packages - nco - cdo - Add new pytorch test ### ...
(QB_NEW_EN)
[grammar] ~29-~29: There might be a mistake here.
Context: ...ntextily - Explicit Pip Packages - nco - cdo - Add new pytorch test ### Removed ...
(QB_NEW_EN)
[grammar] ~30-~30: There might be a mistake here.
Context: ... - Explicit Pip Packages - nco - cdo - Add new pytorch test ### Removed - Rem...
(QB_NEW_EN)
🔇 Additional comments (2)
CHANGELOG.md (1)
14-14: Version bump matches script — good catch.Changelog now aligns with EXAMPLE_MINI_VERSION=25.3.1-0.
install_miniforge.bash (1)
76-76: Miniforge example version update looks correct.Matches the changelog entry (25.3.1-0).
1 participant
Closes #36
Closes #28
This PR:
contextilyandecmwf-opendataas new packages