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The Francis Crick Institute

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  1. TRACERx-PHLEX TRACERx-PHLEX Public

    Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging

    Shell 11

  2. Etch-a-Cell-Nuclear-Envelope Etch-a-Cell-Nuclear-Envelope Public

    Python 8 1

  3. OmeSliCC OmeSliCC Public

    Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)

    Python 7 1

  4. ActiveUnetSegmentation ActiveUnetSegmentation Public

    Unet implementation to work with active contours for segmentations. Using keras and tensorflow 1.15 or 2.5.

    Python 5

  5. warpAnnotations warpAnnotations Public

    A tool to transform annotations (such as points, skeletons or meshes) between spatial datasets.

    MATLAB 5

  6. cbias-napari cbias-napari Public

    Introduction to Napari training course

    Jupyter Notebook 5 1

Repositories

Showing 10 of 129 repositories
  • introduction-to-image-analysis Public Forked from RMS-DAIM/introduction-to-image-analysis
    FrancisCrickInstitute/introduction-to-image-analysis’s past year of commit activity
    Jupyter Notebook 0 CC-BY-SA-4.0 1 0 0 Updated Oct 15, 2024
  • Segment-Flow Public

    Nextflow pipeline for deep learning segmentation models

    FrancisCrickInstitute/Segment-Flow’s past year of commit activity
    Python 2 1 0 0 Updated Oct 15, 2024
  • AIoD-Model-Registry Public

    The core registry for all AI models available on AI on Demand

    FrancisCrickInstitute/AIoD-Model-Registry’s past year of commit activity
    Python 0 0 2 0 Updated Oct 15, 2024
  • babs-data-challenge-rna-atac Public Forked from phileastbioinf/data-challenge-rna-atac

    Recruitment ATAC & RNA-seq data challenge questions and material

    FrancisCrickInstitute/babs-data-challenge-rna-atac’s past year of commit activity
    0 2 0 0 Updated Oct 10, 2024
  • Making-Lab-Repositories Public
    FrancisCrickInstitute/Making-Lab-Repositories’s past year of commit activity
    2 0 0 0 Updated Oct 9, 2024
  • Monitor-Blanking-V2 Public

    Monitor blanking for msi displays

    FrancisCrickInstitute/Monitor-Blanking-V2’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Oct 9, 2024
  • TWOMBLI Public Forked from wershofe/TWOMBLI

    A ImageJ Plugin implementation of TWOMBLI

    FrancisCrickInstitute/TWOMBLI’s past year of commit activity
    Java 0 3 3 0 Updated Oct 9, 2024
  • cellpose Public Forked from MouseLand/cellpose

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    FrancisCrickInstitute/cellpose’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 390 0 0 Updated Oct 7, 2024
  • CALM Public

    Crick Advanced Light Microscopy

    FrancisCrickInstitute/CALM’s past year of commit activity
    Jupyter Notebook 1 CC-BY-SA-4.0 1 4 0 Updated Oct 7, 2024
  • nextflow-modules Public

    Contains managed modules and subworkflows for Nextflow that can be installed into pipelines

    FrancisCrickInstitute/nextflow-modules’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Oct 7, 2024
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