Quick n Dirty setup at FNNDSC

Quick-n-Dirty setup at FNNDSC

Abstract

This page documents how to run pypx quick-n-dirty via a helper script at the FNNDSC.

Preconditions

You need docker installed and running on your local system. See elsewhere for instructions on getting docker installed and setup.

Setup

Create necessary tunnels

The first step is to create a tunnel from host pretoria to your local machine on port 10402:

ssh rudolphpienaar@pretoria
ssh -g -f -N -X -L 10402:pangea:10402 rudolphpienaar@pangea

Obviously adjust the username and hostname in the above as necessary.

Query on some MRN

PACS_QR.sh -h BCH-chrisdev -Q "--PatientID 41100299"

(Note the above is a fake MRN)

Retrieve on some MRN

PACS_QR.sh -h BCH-chrisdev -Q "--PatientID 41100299 --retrieve --printReport ''"

(Note the above is a fake MRN)