Code

Search space api#140

Code

Merged

jay-m-dev merged 92 commits intomainEpistasisLab/tpot2:mainfrom search_space_apiEpistasisLab/tpot2:search_space_apiCopy head branch name to clipboardJul 11, 2024

+17,649-7,678

Commits

Commits on Mar 19, 2024

• new search space working with est

  perib

  committed
  04886ad

  Copy full SHA for 04886ad

Commits on Mar 20, 2024

• edits

  perib

  committed
  da1749e

  Copy full SHA for da1749e

Commits on Mar 22, 2024

• edits

  perib

  committed
  5b5b222

  Copy full SHA for 5b5b222

Commits on Mar 27, 2024

• tutorials fixes

  perib

  committed
  a28b62f

  Copy full SHA for a28b62f

• edits to tutorials

  perib

  committed
  974582c

  Copy full SHA for 974582c

• Merge branch 'EpistasisLab:main' into new_search_space_def

  perib

  authored
  496ad9b

  Copy full SHA for 496ad9b

• Merge remote-tracking branch 'origin/dev' into new_search_space_def

  perib

  committed
  ac0ba9d

  Copy full SHA for ac0ba9d

• edit

  perib

  committed
  22fd809

  Copy full SHA for 22fd809

• rng_ to rng

  perib

  committed
  68378bc

  Copy full SHA for 68378bc

• Merge pull request #122 from perib/new_search_space_def

  Show description for d5a27cc
  perib

  authored
  d5a27cc

  Copy full SHA for d5a27cc

• graph and tree random length initial pipeline

  perib

  committed
  d806571

  Copy full SHA for d806571

Commits on Mar 29, 2024

• flatten pipelines to graph, graphpipe params

  perib

  committed
  3e2a3c4

  Copy full SHA for 3e2a3c4

Commits on Apr 10, 2024

• flatten to graphpipeline, steadystate

  perib

  committed
  59dad61

  Copy full SHA for 59dad61

Commits on Apr 18, 2024

• lots of edits to configuration spaces

  perib

  committed
  d2dab4e

  Copy full SHA for d2dab4e

• edits

  perib

  committed
  a66ff10

  Copy full SHA for a66ff10

• edits

  perib

  committed
  ca42398

  Copy full SHA for ca42398

• Merge pull request #123 from perib/new_search_space_def

  Show description for 244e897
  perib

  authored
  244e897

  Copy full SHA for 244e897

• fixes, passing tests

  perib

  committed
  a29a95d

  Copy full SHA for a29a95d

• Merge pull request #124 from perib/new_search_space_def

  Show description for 450a7e5
  perib

  authored
  450a7e5

  Copy full SHA for 450a7e5

• more fixes with search spaces - wrapper, make sure all supported modules are included

  perib

  committed
  ef42226

  Copy full SHA for ef42226

• Merge pull request #126 from perib/new_search_space_def

  Show description for b2a00ed
  perib

  authored
  b2a00ed

  Copy full SHA for b2a00ed

Commits on Apr 19, 2024

• added unique_id, fixed issue where graphpipeline not correctly identifying classifiers/regressors

  perib

  committed
  d61cd29

  Copy full SHA for d61cd29

• Merge pull request #127 from perib/new_search_space_def

  Show description for 5448a43
  perib

  authored
  5448a43

  Copy full SHA for 5448a43

• number of nodes on pipelines,gp, recursive + merge graphpipeline nodes, edit tests to remove some fits

  perib

  committed
  7de26d0

  Copy full SHA for 7de26d0

• added GaussianProcessClassifier, test for merge duplicate nodes,

  perib

  committed
  05c9ee5

  Copy full SHA for 05c9ee5

• Merge pull request #128 from perib/new_search_space_def

  Show description for 1710152
  perib

  authored
  1710152

  Copy full SHA for 1710152

Commits on Apr 23, 2024

• cleanup

  perib

  committed
  3ce0584

  Copy full SHA for 3ce0584

• updated dask version dependency

  perib

  committed
  0d63172

  Copy full SHA for 0d63172

Commits on Apr 24, 2024

• complexity objective for more classifiers, added regressors

  perib

  committed
  2b44d0e

  Copy full SHA for 2b44d0e

• bug fixes with configs and wrapper params

  perib

  committed
  58ef5a3

  Copy full SHA for 58ef5a3

• tpotclassifier and tpotregressor now use data size for search spaces

  perib

  committed
  bee43d2

  Copy full SHA for bee43d2

• typo

  perib

  committed
  e17ed2c

  Copy full SHA for e17ed2c

• typo

  perib

  committed
  4578b4f

  Copy full SHA for 4578b4f

• bump version

  perib

  committed
  7a9c535

  Copy full SHA for 7a9c535

• update version

  perib

  committed
  0c2fffb

  Copy full SHA for 0c2fffb

• Merge pull request #129 from perib/new_search_space_def

  Show description for bb8a919
  perib

  authored
  bb8a919

  Copy full SHA for bb8a919

• fix num_nodes test, add update checker, setup.py change

  perib

  committed
  4fa02cf

  Copy full SHA for 4fa02cf

• param_edits

  perib

  committed
  f5f466f

  Copy full SHA for f5f466f

• edit space

  perib

  committed
  79056bd

  Copy full SHA for 79056bd

• optional inner classifiers/regressors

  perib

  committed
  80525ce

  Copy full SHA for 80525ce

• edit

  perib

  committed
  18346fc

  Copy full SHA for 18346fc

• edit version

  perib

  committed
  47b7fd0

  Copy full SHA for 47b7fd0

• Merge pull request #130 from perib/new_search_space_def

  Show description for 8de41fb
  perib

  authored
  8de41fb

  Copy full SHA for 8de41fb

Commits on Apr 25, 2024

• edit default space

  perib

  committed
  9b987e0

  Copy full SHA for 9b987e0

Commits on May 3, 2024

• bug fixes, fixed unique_id type (non-iterable tuples), fixed graphpipeline mutation function

  perib

  committed
  dbba6ee

  Copy full SHA for dbba6ee

Commits on May 4, 2024

• make more mutation/cx functions available for gp

  perib

  committed
  3c6e8d2

  Copy full SHA for 3c6e8d2

• fixed crossover between different node types causing a crash. now different node types return false

  perib

  committed
  5b8f53f

  Copy full SHA for 5b8f53f

Commits on May 11, 2024

• unions, wrapping classifiers/regressors as transformers, multiple options in get_search_space now get flattened to have equal probability.

  perib

  committed
  9338db7

  Copy full SHA for 9338db7

Commits on May 15, 2024

• functions to convert tpot1 config dicts to tpot2

  perib

  committed
  4cba717

  Copy full SHA for 4cba717

• small note

  perib

  committed
  d30c291

  Copy full SHA for d30c291

• Merge pull request #131 from perib/new_search_space_def

  Show description for 8728fff
  perib

  authored
  8728fff

  Copy full SHA for 8728fff

• bug fix

  perib

  committed
  1fecad6

  Copy full SHA for 1fecad6

Commits on May 16, 2024

• search_space fixes

  perib

  committed
  96e60d8

  Copy full SHA for 96e60d8

• some bug fixes with configurations

  perib

  committed
  0b1aa09

  Copy full SHA for 0b1aa09

• Merge pull request #132 from perib/new_search_space_def

  Show description for 2a3ee23
  perib

  authored
  2a3ee23

  Copy full SHA for 2a3ee23

• remove hardcoded wrappers that are no longer needed

  perib

  committed
  5c634b3

  Copy full SHA for 5c634b3

• Merge pull request #133 from perib/new_search_space_def

  Show description for ecb4c10
  perib

  authored
  ecb4c10

  Copy full SHA for ecb4c10

• passed rng to the sp generative functions, updated dynamic union to not include duplicates

  perib

  committed
  50fc0fe

  Copy full SHA for 50fc0fe

• map elites section functions

  perib

  committed
  3602956

  Copy full SHA for 3602956

• import map elites selectors

  perib

  committed
  a007c13

  Copy full SHA for a007c13

• config updates

  perib

  committed
  bb94241

  Copy full SHA for bb94241

Commits on May 17, 2024

• Merge pull request #134 from perib/new_search_space_def

  Show description for 378149f
  perib

  authored
  378149f

  Copy full SHA for 378149f

• gradientboosting invalid crossover parser fix

  perib

  committed
  445428c

  Copy full SHA for 445428c

• one hot encoder no longer throws error by default on unknown categories

  perib

  committed
  53c1019

  Copy full SHA for 53c1019

Commits on May 18, 2024

• addded kbins dsitrcretizer with passthrough

  perib

  committed
  981d9d4

  Copy full SHA for 981d9d4

• make sure genetic feature selection always selects at least one column

  perib

  committed
  ec9c3bb

  Copy full SHA for ec9c3bb

• dyanmic_linear_fix

  perib

  committed
  ac79ed3

  Copy full SHA for ac79ed3

Commits on May 20, 2024

• fix bugs

  perib

  committed
  db0b132

  Copy full SHA for db0b132

Commits on May 23, 2024

• catch dask error when closing, validation strategy now puts errors in the correct column and prevents a crash, base evolver can now terminate mid generation when max_time_seconds is reached,

  perib

  committed
  8056594

  Copy full SHA for 8056594

Commits on May 24, 2024

• Merge pull request #136 from perib/new_search_space_def

  Show description for fedc90d
  perib

  authored
  fedc90d

  Copy full SHA for fedc90d

Commits on Jun 7, 2024

• removed a cx function in union pipeline so that we don't unintentionally duplicate search spaces

  perib

  committed
  50d3eb2

  Copy full SHA for 50d3eb2

• added skip

  perib

  committed
  326aae8

  Copy full SHA for 326aae8

Commits on Jun 14, 2024

• imputer

  perib

  committed
  e69e8aa

  Copy full SHA for e69e8aa

• added memory to sequential

  perib

  committed
  5425ee4

  Copy full SHA for 5425ee4

Commits on Jun 19, 2024

• Merge pull request #137 from perib/new_search_space_def

  Show description for bbef3e4
  perib

  authored
  bbef3e4

  Copy full SHA for bbef3e4

Commits on Jun 29, 2024

• estimator with default search spaces. linear new default

  perib

  committed
  64cfc2d

  Copy full SHA for 64cfc2d

• tutorials fixes

  perib

  committed
  9e7cef4

  Copy full SHA for 9e7cef4

• Merge pull request #138 from perib/new_search_space_def

  Show description for a1592e6
  perib

  authored
  a1592e6

  Copy full SHA for a1592e6

Commits on Jul 9, 2024

• removed unused files, passed rng into default_rng

  perib

  committed
  102cdd5

  Copy full SHA for 102cdd5

• wrapper now crossover over hyperparametesr

  perib

  committed
  2b59ec8

  Copy full SHA for 2b59ec8

• made naming clearer

  perib

  committed
  1b63414

  Copy full SHA for 1b63414

• wrapper for crossover functions so that subclasses can use crossover instead of _crossover

  perib

  committed
  e388651

  Copy full SHA for e388651

• tpot estimator documentation edit

  perib

  committed
  a250ed2

  Copy full SHA for a250ed2

• update documentation

  perib

  committed
  6905e6f

  Copy full SHA for 6905e6f

• fixed imputation tutorial

  perib

  committed
  f7b4b27

  Copy full SHA for f7b4b27

• fix

  perib

  committed
  76f76fa

  Copy full SHA for 76f76fa

• wrap fix

  perib

  committed
  334ca58

  Copy full SHA for 334ca58

Commits on Jul 10, 2024

• added check for infinite max_eval_time_seconds

  perib

  committed
  8c0379c

  Copy full SHA for 8c0379c

• Print out package versions and make tests verbose

  jay-m-dev

  committed
  dc1fb8a

  Copy full SHA for dc1fb8a

• Pin numpy version

  jay-m-dev

  committed
  76d3989

  Copy full SHA for 76d3989

Commits on Jul 11, 2024

• Merge pull request #139 from perib/new_search_space_def

  Show description for 93e709a
  jay-m-dev

  authored
  93e709a

  Copy full SHA for 93e709a

• Resolve version conflicts and test conflicts

  jay-m-dev

  committed
  65b6760

  Copy full SHA for 65b6760